mRNA_P-lacustris_contig1090.750.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1090.750.1 vs. uniprot
Match: D7G619_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G619_ECTSI) HSP 1 Score: 375 bits (962), Expect = 3.410e-105 Identity = 296/564 (52.48%), Postives = 333/564 (59.04%), Query Frame = 3
Query: 2043 SEGGSVAKVSKEIERMQDRCARLCALVARLGIAR-HGEQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAAEQPPEKRDEFNLGTHSVTPAVAAGIATSEVLRLSIALAGDLQYLLSRPFYCRVLESFSFTPERKCLCRRDFDTIDNNATAAPATTPAAPTAARRQHDECGISGCEGVXXXXXXXXXXPTVGGKGHGDDRVGQHLRSKRQDQPRETHTLDSSTGEENALGFATDNGSGSGTGAQKD---------IQRTRPTPMRTPMKQRAAGRAGHLSGRDISFAAGGECWARWGGGLDNAHGFRVRPTLYQASDLLSLGHLSSFLASARSRAAHRAMSSLTRELKRDVLAAERSAREAVXXXXXXXXXXXXXXXXXLAATARVASVAVSARDEGSLLLEEFHEQLAKAMRAERDRLEQNNDERAXXXXXXXXXXLETQAKGDKHSIDLGHLTSLLDSKAGQEDLVSITRAMGDVEETLQVVRESVPGENILQELQEALARKADKAYTKRQMALLVSRVSALLKEESDEPAMAKKCLSCDRAFNKLSFKELELAQK 3704
SE GS + KEI RMQDRC RL ALVARLG+A+ H G FAAE+ E+R + N TP AAG SEVLRLS ALAGDLQYLLSRP YCRVL++F+FTP RKCLC RDFDT A A P AAP +AR G +G E V + G G D+ G+ + + + + D EE+ AT S +GTG + + R PT M P+ + G SG F GE G L+ A GFRVR TLYQ +LSLGHLSSFLASARSRAAHRA+SSLT+ XXXXXXXXXXXXXXXXXL A SAR+EGSLLL EFHEQLAKAMRAERDR XXXXX LE+Q LGHL SLLD KAGQEDL SITRAMGDVEETL VVR+S+PGE LQELQEALARKADKAYTKR+MALLVSRVSALL+EES+EP+MAKKCLSCDRAFNKLSFKELELAQ+
Sbjct: 430 SERGSATSLKKEIGRMQDRCTRLGALVARLGVAQQHHLDGRGKGDRAEAWVQDGTGRRPSVV------------FAAEEQSEERGDVNRDAQRPTPEAAAGAIASEVLRLSCALAGDLQYLLSRPAYCRVLDAFAFTPGRKCLCGRDFDTA-GTAAAIPVVPAAAPASAR------GKNGDEHVGRG--------SGGDNGRDRDQGGEPRQQPQWQRQGQAQANDRGAAEEHTNSGATGGESDAGTGDRAGKGQHQKPPPMLRHMPTFMSVPLTAQNGG--ARPSGEGF-FVVAGE------GALEKASGFRVRSTLYQCF-VLSLGHLSSFLASARSRAAHRAVSSLTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAXXXXXXXXXSARNEGSLLLVEFHEQLAKAMRAERDRXXXXXXXXXXXXXXRVGQLLESQ---------LGHLKSLLDGKAGQEDLASITRAMGDVEETLTVVRQSIPGEKALQELQEALARKADKAYTKRKMALLVSRVSALLQEESEEPSMAKKCLSCDRAFNKLSFKELELAQQ 947 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1090.750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1090.750.1 >prot_P-lacustris_contig1090.750.1 ID=prot_P-lacustris_contig1090.750.1|Name=mRNA_P-lacustris_contig1090.750.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=971bp MADDGGYLCVDLLLQRTLEELAEGLACAARWFFKLRFESHVKSFFVVAFQback to top mRNA from alignment at P-lacustris_contig1090:30497..42682- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1090.750.1 ID=mRNA_P-lacustris_contig1090.750.1|Name=mRNA_P-lacustris_contig1090.750.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=12186bp|location=Sequence derived from alignment at P-lacustris_contig1090:30497..42682- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1090:30497..42682- >mRNA_P-lacustris_contig1090.750.1 ID=mRNA_P-lacustris_contig1090.750.1|Name=mRNA_P-lacustris_contig1090.750.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=5826bp|location=Sequence derived from alignment at P-lacustris_contig1090:30497..42682- (Pleurocladia lacustris SAG_25_93)back to top |