mRNA_P-lacustris_contig109.736.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig109.736.1
Unique NamemRNA_P-lacustris_contig109.736.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig109.736.1 vs. uniprot
Match: D7G3Y7_ECTSI (Bardet-Biedl syndrome 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y7_ECTSI)

HSP 1 Score: 972 bits (2513), Expect = 0.000e+0
Identity = 493/604 (81.62%), Postives = 536/604 (88.74%), Query Frame = 1
Query:    4 MSDILASAANVDDNPFTEKSRLGPWLAAWRDPVAGLACNGGCMQFMDLGRNGDYKLVVACRARKLKVYQGTSIFAEHALLEEPSGLCAFHGLDDNI-TSGGGSPAVAVAAGPYIFIYKNLRPYFKFTAPLVEPSAEEVDLWTRYRKDDVDANTLKNLLTKAREDGVRLGPLSTDFLAAASTFEESQNFLSARGGSEPLSRTTVITCITRMKRARDEEGAPVCLLAGTEDGQLVVLDPPCNVITTAQLPRGAVPAFLAVGGLFDTDWRLAVACRNGCIYTIKNGEVARTAVVTGTVIRLEATPCGLARLPRQIYAATTDHNLHAYHLKGRRDFSLKMPALVTQLEPMQTRSTTCLLVALADGDIRLYGDERNLLHTLKTQEPIAALRFGPYAREDGALAVISTEGKLTIFMLNRKADLRK--TPGGTANGRPPEQDIPLKVPKKTKLYVEQTQREKLQAGDIHRSFQKDLCRLRLTAARAYVGTITDGQQGVSAVGGAASLRLHAQCQGLGPNFSIKLELQNHGERALTNLLVAFTYDRDTYNMESGQFVVPVLLPGISHRHKMAITSIDEGGAAGSVRILVLGSSEPSPLVSALVNMPLSELTD 1806
            MS ILA AA V+D P  EK RLGPWLAAW DPVAGL CNGGCMQFMDL RNGDYK+VVACRA  LKVYQGTSIFAEH LL+EPSGLCAF+G++DN  T+GG  PAVAVAAGPYIFIYKNLRPYFKFTAPLVEPS EE+++WTRYRK +VDA+TLK LL KA EDGVRLGPLSTDFLA     E+  +FLSARG SEPLSRTT+ITC+  M RAR+EEG+PVCLLAGTEDGQ+V LDPPC V+TTAQLPRGAVPAFLAVGGLFD+DWRLAVACRNG IYT+K+G+VA+TAVVTGTVI LEATPCGLARLPRQ+YAATTD+NLHAYHLKGRRDFSLKMPALV QLE M+TRSTTCLLVALADG++RLY  E+NLLHTLKTQEPIAALRFGPYAREDGALAV+S  GKLTIFMLNRKADLRK  T G    G PPEQDIPLKVPKKTKLYVEQTQR KLQAG+IHR+FQKDLC LRLTAARAYV TITDG+QGVSAVG AASLRLHAQCQGLGPNF IKLELQN G+RALTNL VAFTYDRD Y ME GQF+V  L+PG+S RH++AIT+IDEGGAAGSVRILVL  S PSPLVSA+VNMPLSEL D
Sbjct:    1 MSSILAGAAQVED-PLPEKGRLGPWLAAWHDPVAGLTCNGGCMQFMDLSRNGDYKIVVACRAMSLKVYQGTSIFAEHPLLDEPSGLCAFYGVEDNTNTAGGERPAVAVAAGPYIFIYKNLRPYFKFTAPLVEPSDEELEIWTRYRKGEVDADTLKALLAKATEDGVRLGPLSTDFLAP--DLEDRGSFLSARGASEPLSRTTIITCLATMNRAREEEGSPVCLLAGTEDGQIVFLDPPCKVLTTAQLPRGAVPAFLAVGGLFDSDWRLAVACRNGRIYTVKDGDVAKTAVVTGTVISLEATPCGLARLPRQVYAATTDNNLHAYHLKGRRDFSLKMPALVVQLEAMETRSTTCLLVALADGNVRLYDAEKNLLHTLKTQEPIAALRFGPYAREDGALAVVSVTGKLTIFMLNRKADLRKPKTFGAATAGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGLGPNFKIKLELQNQGDRALTNLPVAFTYDRDIYAMEKGQFMVSALIPGVSSRHEIAITNIDEGGAAGSVRILVLSPSGPSPLVSAVVNMPLSELID 601          
BLAST of mRNA_P-lacustris_contig109.736.1 vs. uniprot
Match: A0A7S4FYB0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FYB0_9EUGL)

HSP 1 Score: 472 bits (1214), Expect = 1.290e-156
Identity = 253/591 (42.81%), Postives = 380/591 (64.30%), Query Frame = 1
Query:   37 DDNPFTEKSRLGPWLAAWRDPVAGLACNGGCMQFMDLGRNGDYKLVVACRARKLKVYQGTSIFAEHALLEEPSGLCAFHGLDDNITSGGGSPAVAVAAGPYIFIYKNLRPYFKFTAPLVEPSAEEVDLWTRYRKDDVDANTLKNLLTKAREDGVRLGPLSTDFLAAASTFEESQNFLSARGGSEPLSRTTVITCITRMKRARDEEGAPVCLLAGTEDGQLVVLDPP-CNVITTAQLPRGAVPAFLAVGGLFDTDWRLAVACRNGCIYTIKNGEVARTAVVTGTVIRLEATPCGLARLPRQIYAATTDHNLHAYHLKGRRDFSLKMPALVTQLEP--MQT-RSTTCLLVALADGDIRLYGDERNLLHTLKTQEPIAALRFGPYAREDGALAVISTEGKLTIFMLNRKADLRKTPGGTANGRPPEQDIPLKVPKKTKLYVEQTQREKLQAGDIHRSFQKDLCRLRLTAARAYVGTITDGQQGVSAVGGAASLRLHAQCQGLGPNFSIKLELQNHGERALTNLLVAFTYDRDTYNMESGQFVVPVLLPGISHRHKMAITSIDEGGAAGSVRILVLGSSEPSPLVSALVNMPLSE 1797
            ++ P  EK  L  WL AW DP+AG      C++  D+  +G++KL++A   ++LKVY GT + AE+ALL+ PS +C F+   ++       PAVAV++GPYI+IY NLRPY+KFT P VE +  E D+W   R   +      + L  A+E+GV L   S D LA     E+ + ++     S PL + TVI  +T +K+ +DE GA  CL+ GTE+ ++++LDP   +++   QLP  ++PAF+   GL+D D+R+ VACRNG +YT+++GE+      TG VI LE+ PCGLAR+ + +   T  + LH+YH+KG++ +S+ +P+ +T +    M+T R+T   +VALA+G+IR+Y   ++L+HTL+T + +  L+FG YARED  L V    G + I ML R A L  T G T+ G PPEQ+IP++VPKKT+LY+EQTQREK    ++HR FQ+DLC+LRL  ARAYV  +TDGQ  +S   G+ SLRL A  QGLGP F IKL +QN G ++LT + + FT+++  Y M S   ++P+L+P + + +++ +  +DEG  A  +R+ V       P+++ALVNMPL++
Sbjct:   39 EEKPKDEKKPL--WLNAWEDPLAGARAFSSCIELADITGDGNHKLLIADANKQLKVYSGTDLVAENALLDVPSAICCFYMTYNDAVH---RPAVAVSSGPYIYIYMNLRPYYKFTLPPVEVNQIETDIWANLRSQKIPVQQAVDDLENAKENGVSLTSRSLDLLALEDDAEKQKAYVDDHRNS-PLIQQTVIVAMTVLKKDKDEHGAIGCLVIGTENSRILILDPTGSSIMKKVQLP--SIPAFIVATGLYDVDYRIVVACRNGNVYTVRDGEL------TGIVIELESQPCGLARVDKSVMVGTMANVLHSYHVKGKKQYSVYLPSSITNMVALSMETMRTTKATIVALANGEIRVYNG-KSLIHTLETNDVVMGLKFGKYAREDNTLVVAYRSGTIHIKMLPRLASLEVTKGQTS-GPPPEQNIPIRVPKKTRLYIEQTQREKEFGTEMHRVFQRDLCKLRLATARAYVKVLTDGQGPLSYTSGS-SLRLTAHVQGLGPLFKIKLNIQNTGTKSLTEIPIVFTFNQSIYRMPSPTLLLPLLVPSLVYNYEVDVECVDEGAGADVIRVYVCNPHSAIPIITALVNMPLAD 612          
BLAST of mRNA_P-lacustris_contig109.736.1 vs. uniprot
Match: A0A7S1IQI7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IQI7_9EUGL)

HSP 1 Score: 459 bits (1181), Expect = 9.520e-152
Identity = 247/586 (42.15%), Postives = 374/586 (63.82%), Query Frame = 1
Query:   55 EKSRLGPWLAAWRDPVAGLACNGGCMQFMDLGRNGDYKLVVACRARKLKVYQGTSIFAEHALLEEPSGLCAFH-GLDDNITSGGGSPAVAVAAGPYIFIYKNLRPYFKFTAPLVEPSAEEVDLWTRYRKDDVDANTLKNLLTKAREDGVRLGPLSTDFLAAASTFEESQNFLSARGGSEPLSRTTVITCITRMKRARDEEGAPVCLLAGTEDGQLVVLDPP-CNVITTAQLPRGAVPAFLAVGGLFDTDWRLAVACRNGCIYTIKNGEVARTAVVTGTVIRLEATPCGLARLPRQIYAATTDHNLHAYHLKGRRDFSLKMPALVTQLEP--MQT-RSTTCLLVALADGDIRLYGDERNLLHTLKTQEPIAALRFGPYAREDGALAVISTEGKLTIFMLNRKADLRKTPGGTANGRPPEQDIPLKVPKKTKLYVEQTQREKLQAGDIHRSFQKDLCRLRLTAARAYVGTITDGQQGVSAVGGAASLRLHAQCQGLGPNFSIKLELQNHGERALTNLLVAFTYDRDTYNMESGQFVVPVLLPGISHRHKMAITSIDEGGAAGSVRILVLGSSEPSPLVSALVNMPLSE 1797
            E+   G WL AW+DP+AG+     C++  D+  +G +KL+VA  +R LKV+ GT + AE+ LL+ PS +C F+   +D +      PAVA+++GPYI+IY NLRPY+KFT P VE +  E D+W   R   +        L  A+E+GV L   S D LA     ++  ++++    S PL + TVI  +  +K+ ++E GA  CL+ GTE+ ++++LDP   +++    LP  ++PAF+   GL+D D+R+ VACRNG IYT+++GE+      TG VI LE+ PCGL R+ + I   T  + +H+YH+KG++ +S+ MP  +T +    M+T R+T   +VALA+G+IR+Y + ++L+HTL+T + I  L+FG YARED  L +    G + I ML R A L  T G  A G PPEQ+IP++VPKKT+LY+EQTQREK    ++HR FQ+DLC+LRL  ARAYV  +TDGQ  +S   G+ SLRL A  QGLGP F IKL +QN G ++LT + + FT+++  Y M +   ++P+L+P + + +++ +  IDE   A  +R+ V   +   P+++ALVNMPL++
Sbjct:   36 EEKGSGLWLDAWKDPLAGVRAFSNCLELADIAGDGSHKLLVADASRTLKVFSGTELVAENPLLDVPSAICCFYMSYNDAVHR----PAVAISSGPYIYIYMNLRPYYKFTLPPVEVNQVEADIWANLRNQKITIAQAVEDLENAKENGVSLTSRSLDLLALEDDGDKQMSYVAEHKNS-PLVQQTVIVTMAVLKKDKEEHGAIGCLVIGTENCRILILDPTGSSIMKKVSLP--SIPAFIVATGLYDVDYRIVVACRNGNIYTVRDGEL------TGVVIELESQPCGLCRVDKSIMVGTMANVMHSYHVKGKKQYSVYMPCGITNMTALSMETMRTTKATIVALANGEIRVY-NAKSLIHTLQTNDIITGLKFGKYAREDNTLVIAYRSGTIHIKMLPRLASLEATKGQNA-GPPPEQNIPIRVPKKTRLYIEQTQREKEFGTEMHRVFQRDLCKLRLATARAYVKVLTDGQGPLSYTSGS-SLRLTAHVQGLGPLFKIKLNIQNTGTKSLTAIPIVFTFNQSIYRMPNPTLLLPLLVPSLVYNYEVDVECIDEAAGADVIRVYVCNPNSAIPIITALVNMPLAD 605          
BLAST of mRNA_P-lacustris_contig109.736.1 vs. uniprot
Match: A0A7S0LFK4_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LFK4_9EUKA)

HSP 1 Score: 458 bits (1178), Expect = 1.180e-151
Identity = 252/585 (43.08%), Postives = 361/585 (61.71%), Query Frame = 1
Query:   55 EKSRLGPWLAAWRDPVAGLACNGGCMQFMDLGRNGDYKLVVACRARKLKVYQGTSIFAEHALLEEPSGLCAFHGLDDNITSGGGSPAVAVAAGPYIFIYKNLRPYFKFTAPLVEPSAEEVDLWTRYRKDDVDANTLKNLLTKAREDGVRLGPLSTDFLAAASTFEESQNFLSARGGSEPLSRTTVITCITRMKRARDEEGAPVCLLAGTEDGQLVVLDPP-CNVITTAQLPRGAVPAFLAVGGLFDTDWRLAVACRNGCIYTIKNGEVARTAVVTGTVIRLEATPCGLARLPRQIYAATTDHNLHAYHLKGRRDFSLKMPA---LVTQLEPMQTRSTTCLLVALADGDIRLYGDERNLLHTLKTQEPIAALRFGPYAREDGALAVISTEGKLTIFMLNRKADLRKTPGGTANGRPPEQDIPLKVPKKTKLYVEQTQREKLQAGDIHRSFQKDLCRLRLTAARAYVGTITDGQQGVSAVGGAASLRLHAQCQGLGPNFSIKLELQNHGERALTNLLVAFTYDRDTYNMESGQFVVPVLLPGISHRHKMAITSIDEGGAAGSVRILVLGSSEPSPLVSALVNMPLSE 1797
            +K     WL AW DPVAG+     C++  DL  +GD KL+V    ++LK+Y+GT++ +E+ LL+ P  +C F+         G SP+VAV AG Y+FIY+NLRPY+KFT PL+E S  EV LW          + ++  L   R+ G  +   S D L      E ++     +G  +PL R TV+TC+  +++  DEEG+   L+ GTE GQ+ +L+P       + QLP  A PAF+AV GL+  ++R+  ACR+G +Y+IKNGE       TG  I LEA PCGL R+ + I  A     ++A+H+KG++ +SL +P+    + QLE +Q R+   LL+ LA+G++R Y  E++L+ TL+  E +  LRFGPY RE+ +L  I   G +TI ML R+ADL         G PPEQD+PL +PKKTKLYVEQTQRE+ QA D+HR FQ+DLC+LRL+ AR+YV  ITDGQ  VS   G+ SLRL AQ QGLGP F +KL LQN G + +T+++   TY+   Y ++   F +P+L+PG+  R    +  +DE G A ++R+ V  +    P++SA+VNMP+SE
Sbjct:   14 DKKSKKVWLHAWHDPVAGIKAFTPCVRLADLSGDGDSKLLVGTADKRLKIYKGTNLLSENVLLDAPVAICTFNSDGKK----GSSPSVAVGAGAYVFIYRNLRPYYKFTLPLLEVSTREVALWKELTSRQRSIDEVREELANMRDGGSAISSRSQDLLGIDDPHEATRFIDDVKG--KPLVRQTVVTCMEVLRKDMDEEGSISMLVVGTEAGQVHILEPSGTRANVSVQLP--ATPAFMAVTGLYTVEYRIVCACRDGHVYSIKNGEQ------TGAAIELEAMPCGLVRIDKTILVACMSSVVNAFHIKGKKLYSLFLPSPAVCIEQLE-LQKRAARALLLGLANGELRCY-QEKHLIATLQLGETLTGLRFGPYGREESSLICIGESGSITIKMLQRQADLDSAANPV--GPPPEQDVPLSIPKKTKLYVEQTQREREQATDMHRIFQRDLCKLRLSTARSYVKIITDGQGPVSYTSGS-SLRLTAQVQGLGPAFKVKLSLQNTGRKVVTDMVATLTYNAMLYRLKQSLFKIPLLVPGVMLRLDAELECVDENGGADTIRVFVCSAKSSMPILSAVVNMPMSE 579          
BLAST of mRNA_P-lacustris_contig109.736.1 vs. uniprot
Match: A0A8J5XY91_DIALT (BBS1 domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XY91_DIALT)

HSP 1 Score: 451 bits (1159), Expect = 7.030e-149
Identity = 255/589 (43.29%), Postives = 362/589 (61.46%), Query Frame = 1
Query:   46 PFTEKSRLGPWLAAWRDPVAGLACNGGCMQFMDLGRNGDYKLVVACRARKLKVYQGTSIFAEHALLEEPSGLCAFHGLDDNITSGGGSPAVAVAAGPYIFIYKNLRPYFKFTAPLVEPSAEEVDLWTRYRKDDVDANTLKNLLTKAREDGVRLGPLSTDFLAAASTFEESQNFLSARGGSEPLSRTTVITCITRMKRARDEEGAPVCLLAGTEDGQLVVLDPP-CNVITTAQLPRGAVPAFLAVGGLFDTDWRLAVACRNGCIYTIKNGEVARTAVVTGTVIRLEATPCGLARLPRQIYAATTDHNLHAYHLKGRRDFSLKMPALVTQLEPM---QTRSTTCLLVALADGDIRLYGDERNLLHTLKTQEPIAALRFGPYAREDGALAVISTEGKLTIFMLNRKADLRKTPGGTANGRPPEQDIPLKVPKKTKLYVEQTQREKLQAGDIHRSFQKDLCRLRLTAARAYVGTITDGQQGVSAVGGAASLRLHAQCQGLGPNFSIKLELQNHGERALTNLLVAFTYDRDTYNMESGQFVVPVLLPGISHRHKMAITSIDEGGAAGSVRILVLGSSEPSPLVSALVNMPLSEL 1800
            P     +  PWL AWRDPVA L     CM+ +DL  +GDYKL+VA   R+LKVY+ TS+ +E+ LL+ P  +C  +      TS    P+VAVA+GP++FIY+ LRPY+KF+ P    +  E ++WT+     +D     + L  AR+ G  L   S D +   +  E +    + RG   PL+  TVITC+  +++  DEE A   L+ GTE G ++VLD     ++   QLP  + P +LA+ GL+D ++RL  ACRNG IYTIKNGE++      GTV+ LEA PCGLAR+ + I  A     +HAYH+KG++  SL MPA V  +E +   + RS   LLV+L +G++RLY D ++++ T+   +P   +RFG Y RE+ ALA++   G L I ML R A+L  +  G   G PPEQDIPL +PKKT+LYVEQTQRE+ QA ++HR FQ+DLC+LRL  ARAYV  +TDGQ   S   G  S+RL A  QGLGP F ++L LQN G + + +L + F+ +   Y + +    +P+LLP +++R    + SIDE GA+  VR+ V   +   P++SA+V MPLSE+
Sbjct:    4 PIAAPPQRSPWLHAWRDPVANLKAFSPCMRLVDLNGDGDYKLIVADAERRLKVYRNTSLISENVLLDTPVSMCVTY----TETSKPRVPSVAVASGPHVFIYRRLRPYYKFSVPPTPLAQAEANVWTKLHSGAMDIAEAVDALVAARDGGTLLTTRSVDLINTEALDERTALVDAWRGA--PLTHQTVITCMEVIRKNMDEEDALSQLVLGTEAGSVLVLDVTGVTIVNRFQLP--STPVYLAITGLYDVEYRLVCACRNGSIYTIKNGELS------GTVVELEAQPCGLARIDKHILVACMGAVVHAYHIKGKKSHSLFMPAPVAAIEVLSLERMRSVKALLVSLHNGEVRLYVD-KSIIATIHLDDPAVGMRFGAYGREEAALAMVGKAGTLVIKMLQRTANLESS--GAPPGPPPEQDIPLAIPKKTRLYVEQTQREREQATEMHRIFQRDLCKLRLNTARAYVKVLTDGQGAQSYTVGQ-SVRLTAGVQGLGPLFKLRLNLQNLGNKPVVDLEMTFSANTMLYKLHTHVLQLPLLLPSVTYRCDCDVESIDEAGASDMVRVYVCTPTSKVPVISAVVTMPLSEV 574          
BLAST of mRNA_P-lacustris_contig109.736.1 vs. uniprot
Match: A0A1V9ZTA5_9STRA (Bardet-Biedl syndrome 1 family protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTA5_9STRA)

HSP 1 Score: 431 bits (1108), Expect = 7.070e-141
Identity = 239/582 (41.07%), Postives = 363/582 (62.37%), Query Frame = 1
Query:   67 LGPWLAAWRDPVAGLACNGGCMQFMDLGRNGDYKLVVACRARKLKVYQGTSIFAEHALLEEPSGLCAFHGLDDNITSGGGSPAVAVAAGPYIFIYKNLRPYFKFTAPLVEPSAEEVDLWTRYRKDDVDANTLKNLLTKAREDGVRLGPLSTDFLAAASTFEESQNFLSARGGSEPLSRTTVITCITRMKRARDEEGAPVCLLAGTEDGQLVVLDPP-CNVITTAQLPRGAVPAFLAVGGLFDTDWRLAVACRNGCIYTIKNGEVARTAVVTGTVIRLEATPCGLARLPRQIYAATTDHNLHAYHLKGRRDFSLKMPALVTQLEPM---QTRSTTCLLVALADGDIRLYGDERNLLHTLKTQEPIAALRFGPYAREDGALAVISTEGKLTIFMLNRKADLRKTPGGTANGRPPEQDIPLKVPKKTKLYVEQTQREKLQAGDIHRSFQKDLCRLRLTAARAYVGTITDGQQGVSAVGGAASLRLHAQCQGLGPNFSIKLELQNHGERALTNLLVAFTYDRDTYNMESGQFVVPVLLPGISHRHKMAITSIDEGGAAGSVRILVLGSSEPSPLVSALVNMPLSEL 1800
            +GPWL A+ + VAG+     C++  D+  +GDYKL+VA   R+LK+Y+G+++ +E A+L  P  LC F+   D++     +P++AVA+GP I+IY+N+RPY+KFT P ++  ++EV LW +  K +VD     + L   R  G +L   S  FLA     E+   F+S R   +PL   T ITC+  + ++ DE+ A  CL+ GTE GQ+ VLD    N+ T A LP  + P  + V GLFD ++RL V+CRNG +YT+KNGE+ ++      VI LE+  C L ++ + I  A  D  + ++HLKG++++S+ M   +  +E +   +T+++  +L+AL  G++ LY +E+  + +      + A+ FG Y RE+ +L ++   G LT+ +L R ADL  T   TA+G PPEQDIPL VPKKTKLYVEQTQRE+  A ++HR FQ+DLC+LRLT  R+YV  I DGQ  VS   GA S+RL+A+ QG+GP F ++L+LQN G +   ++ +   YD   Y +      +P+LLPG+ + + + + +I + GAA S+ I V G     PLVSA+VNMPLS++
Sbjct:   36 IGPWLHAYHNTVAGIKAFTQCIKLADVYGDGDYKLIVADADRRLKMYKGSTLLSEQAILGVPVALCVFY--SDSVRPR--TPSIAVASGPSIYIYRNMRPYYKFTLPPLDVVSDEVKLWAQLAKCEVDIIGAVHQLNTLRSQGAQLSQRSRGFLAI-DDMEQQAEFVS-RYMDDPLVEQTTITCMATLNKSMDEKDAVGCLVIGTEAGQVYVLDQQGANITTKAYLP--STPVDIVVNGLFDVEYRLIVSCRNGSVYTVKNGELLKS------VIELESPACALLQMDKSIIVACMDRKITSFHLKGKKNWSMTMAQDIVAMEALNLRRTKNSKGILIALRKGEVLLY-NEKIKITSFHLDSLLTAMVFGQYGREEASLVLVHKSGALTLKILQRNADLEGT--STASGPPPEQDIPLNVPKKTKLYVEQTQRERDHAVEMHRHFQRDLCKLRLTTVRSYVKVIRDGQGPVSYATGA-SIRLNAKVQGIGPLFKVQLQLQNSGAKFAADVPIVLHYDHGLYRIRQSLLQIPLLLPGVQYAYTIDVENISDTGAADSIYIFVCGKDSCVPLVSAVVNMPLSDI 599          
BLAST of mRNA_P-lacustris_contig109.736.1 vs. uniprot
Match: A0A024TEN6_9STRA (BBS1 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEN6_9STRA)

HSP 1 Score: 428 bits (1100), Expect = 9.910e-140
Identity = 245/580 (42.24%), Postives = 353/580 (60.86%), Query Frame = 1
Query:   73 PWLAAWRDPVAGLACNGGCMQFMDLGRNGDYKLVVACRARKLKVYQGTSIFAEHALLEEPSGLCAFHGLDDNITSGGGSPAVAVAAGPYIFIYKNLRPYFKFTAPLVEPSAEEVDLWTRYRKDDVDANTLKNLLTKAREDGVRLGPLSTDFLAAASTFEESQNFLSARGGSEPLSRTTVITCITRMKRARDEEGAPVCLLAGTEDGQLVVLDPPCN-VITTAQLPRGAVPAFLAVGGLFDTDWRLAVACRNGCIYTIKNGEVARTAVVTGTVIRLEATPCGLARLPRQIYAATTDHNLHAYHLKGRRDFSLKMPALVTQLEPM---QTRSTTCLLVALADGDIRLYGDERNLLHTLKTQEPIAALRFGPYAREDGALAVISTEGKLTIFMLNRKADLRKTPGGTANGRPPEQDIPLKVPKKTKLYVEQTQREKLQAGDIHRSFQKDLCRLRLTAARAYVGTITDGQQGVSAVGGAASLRLHAQCQGLGPNFSIKLELQNHGERALTNLLVAFTYDRDTYNMESGQFVVPVLLPGISHRHKMAITSIDEGGAAGSVRILVLGSSEPSPLVSALVNMPLSEL 1800
            PWL A+ + VAG+     C+Q  D+  +GD KL+VA   R+LK+Y+G+++ +E ALL  P  LCAF+            P++AVA+GP I+IY+N+RPY+KFT P+++   EE  LW    K + D     + L   R +G RL   S  FLA     ++++    +R   EPL   T ITC+T + +  DE+ A  CL+ GTE  Q+ +LD     V+    +P  AVP  + V GL+D ++R+ V+CRNG +YT+KNGE+ R+      VI LE+  CGL ++ + I  A  D  + +YHLKG++++S+ MP  +  LE M   +T+ T  +L+AL  G+I LY  E+  +H+ K +  + A+ FG + RE+ +L ++   G LT+ +L R ADL      TA G PPEQD+PL VPKKTKLYVEQTQRE+  A ++HR FQ+DLC+LRLT  R+YV  I DGQ  VS   GAA +RLHA+ QG+GP F I L+LQN G +  ++  +A  YD   Y +     +VP+LLPG+ + + + + S+    AA S+ I V G     PLVSA+VNMPLSEL
Sbjct:   34 PWLHAYHNSVAGIKAFTNCVQLADVYGDGDSKLIVADSDRRLKLYKGSTLMSEQALLGVPVALCAFYSESTRPRM----PSIAVASGPSIYIYRNMRPYYKFTVPVLDIDPEEEKLWKSIAKCETDIPAATHQLNLLRANGSRLTQRSRGFLAIDDIDQQAEYM--SRCMDEPLVEQTTITCMTTVNKNMDEKDAISCLVVGTEAAQVYILDQQGTAVLCKTAIP--AVPVDMVVNGLYDVEYRVIVSCRNGSVYTVKNGELLRS------VIELESPACGLLQMDKSIIVACVDGKVISYHLKGKKNWSMAMPHDIVALEAMNLRRTKHTKGILIALRKGEILLY-HEKIKVHSFKIEGSLTAMVFGQFGREEASLVLVHKTGALTLKILQRNADLEAN--ATAAGPPPEQDVPLNVPKKTKLYVEQTQRERDHATEMHRHFQRDLCKLRLTTVRSYVKVIRDGQGPVSYATGAA-IRLHAKVQGMGPRFKIHLQLQNAGTKFASDAPLALHYDHTLYRVHPSLLIVPLLLPGVLYTYTVDVESVSP--AADSIYIFVCGKGSCVPLVSAVVNMPLSEL 593          
BLAST of mRNA_P-lacustris_contig109.736.1 vs. uniprot
Match: A0A485KBD8_9STRA (Aste57867_1873 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBD8_9STRA)

HSP 1 Score: 426 bits (1094), Expect = 5.780e-139
Identity = 238/582 (40.89%), Postives = 358/582 (61.51%), Query Frame = 1
Query:   64 RLGPWLAAWRDPVAGLACNGGCMQFMDLGRNGDYKLVVACRARKLKVYQGTSIFAEHALLEEPSGLCAFHGLDDNITSGGGSPAVAVAAGPYIFIYKNLRPYFKFTAPLVEPSAEEVDLWTRYRKDDVDANTLKNLLTKAREDGVRLGPLSTDFLAAASTFEESQNFLSARGGSEPLSRTTVITCITRMKRARDEEGAPVCLLAGTEDGQLVVLDPP-CNVITTAQLPRGAVPAFLAVGGLFDTDWRLAVACRNGCIYTIKNGEVARTAVVTGTVIRLEATPCGLARLPRQIYAATTDHNLHAYHLKGRRDFSLKMPALVTQLEPM---QTRSTTCLLVALADGDIRLYGDERNLLHTLKTQEPIAALRFGPYAREDGALAVISTEGKLTIFMLNRKADLRKTPGGTANGRPPEQDIPLKVPKKTKLYVEQTQREKLQAGDIHRSFQKDLCRLRLTAARAYVGTITDGQQGVSAVGGAASLRLHAQCQGLGPNFSIKLELQNHGERALTNLLVAFTYDRDTYNMESGQFVVPVLLPGISHRHKMAITSIDEGGAAGSVRILVLGSSEPSPLVSALVNMPLSE 1797
            +  PWL A+ + VAG+     C+Q  D+  +GDYKL+VA   R+LK+Y+G+S+ +E A+L  P GL  F+   +   +    P++AVA+GP I+IY+N+RPY+KF+ P+++   EE  LW    K +VD     + L   R  G+RL   S  FLA     ++++    +R   EPL   T I C+T + +  +E+ A  CL+ GTE  Q+ +LD    +V++   +P  +VP  + + GL+D ++R+ V+CRNG +YT+KNGE+ R+      VI LE+  C L ++ + I  A  D  + +YHLKG++++S+ MP  +  +E M   +T+ T  +L+AL  G+I LY  E+  +H+      ++A+ FG + RE+ +L ++   G LT+ +L R ADL  +   TA G PPEQDIPL VPKKTKLYVEQTQRE+  A ++HR FQ+DLC+LRLT  R+YV  I DGQ  VS   GA S+RL+A+ QG+GP F I+L+LQN G +    + +A  YD   Y +++    VP+LLPGI + + + + S+   GAA S+ I V G     PLVSA+VNMPL+E
Sbjct:   24 KKSPWLHAYHNTVAGIKAFTNCIQLADVYGDGDYKLLVADMDRRLKMYKGSSLMSEQAILGVPVGLAVFYSEMNRPRT----PSIAVASGPSIYIYRNMRPYYKFSLPVIDVDVEEEKLWAGISKCEVDIPAANHQLNLLRSQGIRLTQRSRGFLAIDDIDQQAEYV--SRFLDEPLVEQTTIVCMTTINKNMEEKDAISCLVVGTEACQIYILDQQGTSVVSKTSIP--SVPVDMVINGLYDVEYRVIVSCRNGSVYTVKNGELLRS------VIELESPACALLQMDKSILVACMDRKIISYHLKGKKNWSMTMPQDIVAMEAMNLRRTKHTKGILIALRKGEILLY-QEKIRVHSFNVDGTLSAMLFGQFGREEASLVLVHKTGALTLKILQRNADLEAS--ATAAGPPPEQDIPLNVPKKTKLYVEQTQRERDHATEMHRHFQRDLCKLRLTTVRSYVKVIRDGQGPVSYATGA-SIRLNAKVQGVGPRFKIQLQLQNSGTKFAAEVPLALHYDHSLYRVDTSLLYVPLLLPGIQYAYTIDVESL--AGAADSIYIFVCGKDSCVPLVSAVVNMPLAE 585          
BLAST of mRNA_P-lacustris_contig109.736.1 vs. uniprot
Match: A0A067C4C7_SAPPC (BBS1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C4C7_SAPPC)

HSP 1 Score: 425 bits (1092), Expect = 1.020e-138
Identity = 244/589 (41.43%), Postives = 360/589 (61.12%), Query Frame = 1
Query:   46 PFTEKSRLGPWLAAWRDPVAGLACNGGCMQFMDLGRNGDYKLVVACRARKLKVYQGTSIFAEHALLEEPSGLCAFHGLDDNITSGGGSPAVAVAAGPYIFIYKNLRPYFKFTAPLVEPSAEEVDLWTRYRKDDVDANTLKNLLTKAREDGVRLGPLSTDFLAAASTFEESQNFLSARGGSEPLSRTTVITCITRMKRARDEEGAPVCLLAGTEDGQLVVLDPP-CNVITTAQLPRGAVPAFLAVGGLFDTDWRLAVACRNGCIYTIKNGEVARTAVVTGTVIRLEATPCGLARLPRQIYAATTDHNLHAYHLKGRRDFSLKMPALVTQLEPMQTRSTTC---LLVALADGDIRLYGDERNLLHTLKTQEPIAALRFGPYAREDGALAVISTEGKLTIFMLNRKADLRKTPGGTANGRPPEQDIPLKVPKKTKLYVEQTQREKLQAGDIHRSFQKDLCRLRLTAARAYVGTITDGQQGVSAVGGAASLRLHAQCQGLGPNFSIKLELQNHGERALTNLLVAFTYDRDTYNMESGQFVVPVLLPGISHRHKMAITSIDEGGAAGSVRILVLGSSEPSPLVSALVNMPLSEL 1800
            P   K+   PWL A  + VAG+     C++  D+  +GDYKL++A   R+LK+Y+GT++ +E A+L EP  L  F+    +  +   +P++AVA+GP I+IY+N+RPY+KFT P ++ S +E  LW +  K +VD     + L   R  G  L   S  FLA     E+   F+S R   +PL   T ITC+T + +  DE+ A  CL+ GTE GQ+ VLD    N+   A LP  + P  +AV GL+D ++RL V+CRNG +YT+KNGE+ ++      VI LE+  C L ++ + I  A  D  + ++HLKG++++S+ MP  V  +E +  R T     +L+AL  G+I LY +E+  + +      +  + FG + RE+ +L ++   G LT+ +L R ADL  T   T++G PPEQDIPL VPKKTKLYVEQTQRE+  A ++HR FQ+DLC+LRLT  R+YV  I DGQ  VS   GA S+RL+A+ QGLGP+F I+L+LQN G + + ++ +A  YD   Y +      +P+LLPG+ + + + + SID  GAA S+ I V G     P+VSA+VNMPLS++
Sbjct:   11 PEKAKAEKSPWLHAHHNAVAGIKAFSPCIKLADVYGDGDYKLLIADADRRLKLYKGTTLLSEQAVLGEPVALSVFY----SDAARPRTPSIAVASGPSIYIYRNMRPYYKFTLPSLDVSPDETKLWGQLAKCEVDIVGAVHQLNLLRSRGTPLTQRSRGFLAI-DDMEQQAEFVS-RYMDDPLVEHTAITCMTTLSKNMDEKDAIGCLVVGTEAGQIYVLDQQGANIAAKAFLP--STPVEIAVNGLYDVEYRLIVSCRNGSVYTVKNGELLKS------VIELESPACALLQMDKGIIVACMDRKVSSFHLKGKKNWSMIMPQDVVAMEALNLRRTKHSKGILIALRKGEILLY-NEKIKVTSFHLDSLLTGMVFGQFGREEASLVLVHKSGALTLKILQRNADLEGT--STSSGPPPEQDIPLNVPKKTKLYVEQTQRERDHAIEMHRHFQRDLCKLRLTTVRSYVKVIRDGQGPVSFATGA-SIRLNAKVQGLGPHFKIQLQLQNSGAKFVADIPIALHYDHGLYRIPQSLLQIPLLLPGVQYAYAIDVESIDATGAADSIYIFVCGKDSCVPIVSAVVNMPLSDV 581          
BLAST of mRNA_P-lacustris_contig109.736.1 vs. uniprot
Match: W4FS53_9STRA (BBS1 domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FS53_9STRA)

HSP 1 Score: 422 bits (1086), Expect = 1.290e-137
Identity = 242/580 (41.72%), Postives = 355/580 (61.21%), Query Frame = 1
Query:   73 PWLAAWRDPVAGLACNGGCMQFMDLGRNGDYKLVVACRARKLKVYQGTSIFAEHALLEEPSGLCAFHGLDDNITSGGGSPAVAVAAGPYIFIYKNLRPYFKFTAPLVEPSAEEVDLWTRYRKDDVDANTLKNLLTKAREDGVRLGPLSTDFLAAASTFEESQNFLSARGGSEPLSRTTVITCITRMKRARDEEGAPVCLLAGTEDGQLVVLDPPCN-VITTAQLPRGAVPAFLAVGGLFDTDWRLAVACRNGCIYTIKNGEVARTAVVTGTVIRLEATPCGLARLPRQIYAATTDHNLHAYHLKGRRDFSLKMPALVTQLEPM---QTRSTTCLLVALADGDIRLYGDERNLLHTLKTQEPIAALRFGPYAREDGALAVISTEGKLTIFMLNRKADLRKTPGGTANGRPPEQDIPLKVPKKTKLYVEQTQREKLQAGDIHRSFQKDLCRLRLTAARAYVGTITDGQQGVSAVGGAASLRLHAQCQGLGPNFSIKLELQNHGERALTNLLVAFTYDRDTYNMESGQFVVPVLLPGISHRHKMAITSIDEGGAAGSVRILVLGSSEPSPLVSALVNMPLSEL 1800
            PWL A+ + VAG+     C+Q  D+  +GD KL+VA   R+LK+Y+G+++ +E ALL  P  L  F        +    P++AVA+GP I+IY+N+RPY+KF  P+++   EE  LWT   K + D     + L   R +G+RL   S  FLA     ++  +++S R   EPL   T ITC+T + +  DE+ A  CL+ GTE  Q+ +LD     V+    +P  +VP  + + GL+D ++R+ V+CRNG +YT+KNGE+ R+      VI LE+  CGL ++ + I  A  D  + +YHLKG++++S+ M   +  LE M   +T+ T  +L+AL  G+I LY  E+  +H+   +  + A+ FG + RE+ +L ++   G LT+ +L R ADL  +   TA G PPEQDIPL VPKKTKLYVEQTQRE+  A ++HR FQ+DLC+LRLT  R+YV  I DGQ  VS   GAA +RL+A+ QG+GP F I+L+LQN G +  + + +A  YD   Y + +  FVVP+LLPG+ + + + + S+    AA S+ I V G     PLVSA+VNMPLSEL
Sbjct:   35 PWLHAYHNSVAGIKAFTNCVQLADVYGDGDNKLIVADADRRLKMYKGSTLMSEQALLGVPVALSVFFSESTRPRT----PSIAVASGPSIYIYRNMRPYYKFAIPVLDVDPEEDKLWTSIAKCETDIPAANHQLNLLRANGIRLTQRSRGFLAI-DDIDQQADYVS-RFIDEPLVEQTTITCMTTINKNMDEKDAISCLVVGTEACQVFILDQQGTAVLCKTSIP--SVPVDMVINGLYDVEYRVIVSCRNGSVYTVKNGELLRS------VIELESPACGLLQMDKNIIVACVDRKVISYHLKGKKNWSMSMSQDIVALEAMNLRRTKHTKGILIALRKGEILLY-HEKIKVHSFNIESNLTAMLFGQFGREEASLVLVHKTGALTLKILQRNADLEAS--ATAAGPPPEQDIPLNVPKKTKLYVEQTQRERDHATEMHRHFQRDLCKLRLTTVRSYVKVIRDGQGPVSYATGAA-IRLNAKVQGIGPRFKIQLQLQNSGTKFASEVPIALHYDHTLYRVGTSLFVVPLLLPGVPYAYTVDVESV--ASAADSIYIFVCGKDSCVPLVSAVVNMPLSEL 594          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig109.736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Y7_ECTSI0.000e+081.62Bardet-Biedl syndrome 1 n=1 Tax=Ectocarpus silicul... [more]
A0A7S4FYB0_9EUGL1.290e-15642.81Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1IQI7_9EUGL9.520e-15242.15Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S0LFK4_9EUKA1.180e-15143.08Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A8J5XY91_DIALT7.030e-14943.29BBS1 domain-containing protein n=2 Tax=Diacronema ... [more]
A0A1V9ZTA5_9STRA7.070e-14141.07Bardet-Biedl syndrome 1 family protein n=1 Tax=Ach... [more]
A0A024TEN6_9STRA9.910e-14042.24BBS1 domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A485KBD8_9STRA5.780e-13940.89Aste57867_1873 protein n=1 Tax=Aphanomyces stellat... [more]
A0A067C4C7_SAPPC1.020e-13841.43BBS1 domain-containing protein n=2 Tax=Saprolegnia... [more]
W4FS53_9STRA1.290e-13741.72BBS1 domain-containing protein n=3 Tax=Aphanomyces... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig109contigP-lacustris_contig109:99157..107110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score978.4
Seed ortholog evalue1.5e-282
Seed eggNOG ortholog2880.D7G3Y7
Preferred nameBBS1
KEGG koko:K16746
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001085,GO:0001103,GO:0001501,GO:0001664,GO:0001764,GO:0001894,GO:0001895,GO:0003008,GO:0003352,GO:0003356,GO:0003674,GO:0005102,GO:0005113,GO:0005119,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0005930,GO:0006629,GO:0006810,GO:0006892,GO:0006893,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007600,GO:0007606,GO:0007608,GO:0007610,GO:0007635,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008594,GO:0009566,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010817,GO:0010970,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016358,GO:0016477,GO:0019953,GO:0021537,GO:0021543,GO:0021544,GO:0021591,GO:0021756,GO:0021761,GO:0021766,GO:0021987,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030534,GO:0030705,GO:0030900,GO:0031090,GO:0031175,GO:0031253,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0032989,GO:0032991,GO:0033036,GO:0033365,GO:0034451,GO:0034464,GO:0034613,GO:0035721,GO:0036064,GO:0040011,GO:0040012,GO:0042048,GO:0042073,GO:0042221,GO:0042445,GO:0042461,GO:0042592,GO:0042886,GO:0042995,GO:0043001,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045444,GO:0045494,GO:0046530,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048854,GO:0048856,GO:0048869,GO:0048870,GO:0048871,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0051179,GO:0051216,GO:0051219,GO:0051234,GO:0051270,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060170,GO:0060249,GO:0060271,GO:0060295,GO:0060296,GO:0060322,GO:0060632,GO:0061351,GO:0061448,GO:0061512,GO:0061951,GO:0065007,GO:0065008,GO:0070491,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0097014,GO:0097458,GO:0098588,GO:0098590,GO:0098876,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902019,GO:1905515,GO:1990778,GO:2000145
EggNOG free text desc.Bardet-biedl syndrome 1
EggNOG OGs2CMUT@1,2QS2X@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons14
Model size1812
Cds size1809
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.767992-UTR-P-lacustris_contig109:99156..991591622815364.767992-UTR-P-lacustris_contig109:99156..99159Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig109 99157..99159 +
1693493502.011779-UTR-P-lacustris_contig109:99156..991591693493502.011779-UTR-P-lacustris_contig109:99156..99159Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig109 99157..99159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.7795026-CDS-P-lacustris_contig109:99159..992911622815364.7795026-CDS-P-lacustris_contig109:99159..99291Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 99160..99291 +
1693493502.022143-CDS-P-lacustris_contig109:99159..992911693493502.022143-CDS-P-lacustris_contig109:99159..99291Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 99160..99291 +
1622815364.7911904-CDS-P-lacustris_contig109:99822..998881622815364.7911904-CDS-P-lacustris_contig109:99822..99888Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 99823..99888 +
1693493502.03021-CDS-P-lacustris_contig109:99822..998881693493502.03021-CDS-P-lacustris_contig109:99822..99888Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 99823..99888 +
1622815364.8059635-CDS-P-lacustris_contig109:100285..1004371622815364.8059635-CDS-P-lacustris_contig109:100285..100437Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 100286..100437 +
1693493502.0382073-CDS-P-lacustris_contig109:100285..1004371693493502.0382073-CDS-P-lacustris_contig109:100285..100437Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 100286..100437 +
1622815364.818215-CDS-P-lacustris_contig109:100720..1008471622815364.818215-CDS-P-lacustris_contig109:100720..100847Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 100721..100847 +
1693493502.0461624-CDS-P-lacustris_contig109:100720..1008471693493502.0461624-CDS-P-lacustris_contig109:100720..100847Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 100721..100847 +
1622815364.8291535-CDS-P-lacustris_contig109:101517..1016721622815364.8291535-CDS-P-lacustris_contig109:101517..101672Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 101518..101672 +
1693493502.057348-CDS-P-lacustris_contig109:101517..1016721693493502.057348-CDS-P-lacustris_contig109:101517..101672Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 101518..101672 +
1622815364.8442612-CDS-P-lacustris_contig109:102111..1021911622815364.8442612-CDS-P-lacustris_contig109:102111..102191Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 102112..102191 +
1693493502.0668252-CDS-P-lacustris_contig109:102111..1021911693493502.0668252-CDS-P-lacustris_contig109:102111..102191Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 102112..102191 +
1622815364.854622-CDS-P-lacustris_contig109:102778..1029061622815364.854622-CDS-P-lacustris_contig109:102778..102906Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 102779..102906 +
1693493502.0760863-CDS-P-lacustris_contig109:102778..1029061693493502.0760863-CDS-P-lacustris_contig109:102778..102906Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 102779..102906 +
1622815364.8652182-CDS-P-lacustris_contig109:103584..1036741622815364.8652182-CDS-P-lacustris_contig109:103584..103674Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 103585..103674 +
1693493502.086213-CDS-P-lacustris_contig109:103584..1036741693493502.086213-CDS-P-lacustris_contig109:103584..103674Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 103585..103674 +
1622815364.8748994-CDS-P-lacustris_contig109:104198..1043111622815364.8748994-CDS-P-lacustris_contig109:104198..104311Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 104199..104311 +
1693493502.0983868-CDS-P-lacustris_contig109:104198..1043111693493502.0983868-CDS-P-lacustris_contig109:104198..104311Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 104199..104311 +
1622815364.884838-CDS-P-lacustris_contig109:104610..1047741622815364.884838-CDS-P-lacustris_contig109:104610..104774Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 104611..104774 +
1693493502.1105533-CDS-P-lacustris_contig109:104610..1047741693493502.1105533-CDS-P-lacustris_contig109:104610..104774Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 104611..104774 +
1622815364.895816-CDS-P-lacustris_contig109:105125..1052261622815364.895816-CDS-P-lacustris_contig109:105125..105226Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 105126..105226 +
1693493502.1258147-CDS-P-lacustris_contig109:105125..1052261693493502.1258147-CDS-P-lacustris_contig109:105125..105226Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 105126..105226 +
1622815364.9050937-CDS-P-lacustris_contig109:105945..1061551622815364.9050937-CDS-P-lacustris_contig109:105945..106155Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 105946..106155 +
1693493502.1348183-CDS-P-lacustris_contig109:105945..1061551693493502.1348183-CDS-P-lacustris_contig109:105945..106155Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 105946..106155 +
1622815364.9168005-CDS-P-lacustris_contig109:106503..1066411622815364.9168005-CDS-P-lacustris_contig109:106503..106641Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 106504..106641 +
1693493502.1429842-CDS-P-lacustris_contig109:106503..1066411693493502.1429842-CDS-P-lacustris_contig109:106503..106641Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 106504..106641 +
1622815364.931254-CDS-P-lacustris_contig109:106957..1071101622815364.931254-CDS-P-lacustris_contig109:106957..107110Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 106958..107110 +
1693493502.1592145-CDS-P-lacustris_contig109:106957..1071101693493502.1592145-CDS-P-lacustris_contig109:106957..107110Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig109 106958..107110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig109.736.1prot_P-lacustris_contig109.736.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig109 99160..107110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig109.736.1

>prot_P-lacustris_contig109.736.1 ID=prot_P-lacustris_contig109.736.1|Name=mRNA_P-lacustris_contig109.736.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=603bp
MSDILASAANVDDNPFTEKSRLGPWLAAWRDPVAGLACNGGCMQFMDLGR
NGDYKLVVACRARKLKVYQGTSIFAEHALLEEPSGLCAFHGLDDNITSGG
GSPAVAVAAGPYIFIYKNLRPYFKFTAPLVEPSAEEVDLWTRYRKDDVDA
NTLKNLLTKAREDGVRLGPLSTDFLAAASTFEESQNFLSARGGSEPLSRT
TVITCITRMKRARDEEGAPVCLLAGTEDGQLVVLDPPCNVITTAQLPRGA
VPAFLAVGGLFDTDWRLAVACRNGCIYTIKNGEVARTAVVTGTVIRLEAT
PCGLARLPRQIYAATTDHNLHAYHLKGRRDFSLKMPALVTQLEPMQTRST
TCLLVALADGDIRLYGDERNLLHTLKTQEPIAALRFGPYAREDGALAVIS
TEGKLTIFMLNRKADLRKTPGGTANGRPPEQDIPLKVPKKTKLYVEQTQR
EKLQAGDIHRSFQKDLCRLRLTAARAYVGTITDGQQGVSAVGGAASLRLH
AQCQGLGPNFSIKLELQNHGERALTNLLVAFTYDRDTYNMESGQFVVPVL
LPGISHRHKMAITSIDEGGAAGSVRILVLGSSEPSPLVSALVNMPLSELT
DW*
back to top

mRNA from alignment at P-lacustris_contig109:99157..107110+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig109.736.1 ID=mRNA_P-lacustris_contig109.736.1|Name=mRNA_P-lacustris_contig109.736.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7954bp|location=Sequence derived from alignment at P-lacustris_contig109:99157..107110+ (Pleurocladia lacustris SAG_25_93)
ACCATGTCCGATATCTTGGCTAGCGCCGCCAACGTTGATGACAACCCGTT CACTGAAAAGAGCCGTTTGGGCCCCTGGTTGGCGGCATGGCGTGATCCGG TGGCAGGCCTCGCGTGTAACGGTGGATGCATGCAGGTGACAAACTGGAAG GAGTTACTGCGGTCTGTACGAGTGACGGGGGAGATGGGGTTGATATTCGT TCATGTTTCTAACTCGGCGGAAAAAGCGAGGGTCTTGCCCCGCAAAGTTG CGGCGACGTGGCTGCAGACCACACCGCCGTCAAATTGTGCGTCAATGAGC ACATCTGCTCGAGCATCTCCCTCCGTACCTGAACTTCACAGTACGAGCGA TTGCGTCATGAAACAGGGCATCGCGAAAATTCCTCATCTCGTTGCCGAGG CTGCGTTTTCCTTTGAACTGAATGCGTGTTGTCCGCACTGTCTCCAATAT GACCTTGCCAGTTTTTGTCCGCGCGTCGTCGAGAAATTCTTTGTTGTTTG AAAATATGGTTTTCTGTTCTGCTACCGCTATCGCAGAATCGAGCTTCGCT TTCTCGACATGAGTAGAACACATGGGCTCTGTCGTGATCTCTCATGCACC GCATCCTTTCCTTGTCCGCCTACCTGTTTCATGAACGTCACCCCGCTCGG ATTGGGCGTTGACTAGTTCATGGACCTCGGCAGGAACGGAGACTACAAGC TTGTCGTGGCATGCCGGGCAAGAAAGCTAAAGGTGCGGGAAGACGTGCCG CGGTTCGGCGCATATGATGGGTGGACACGCCTTAAATGAATAGCTCGAGC ATCAAGCTCGTGGGAACGGGTTGTTCGCGACACTATGTTTTGAAGAATTG ATCTCGTGCTACATTTTCGCCAAACGGGCAATAACATGGTGTAATGTCGC ACTTGTCAACACTGATAGTGCCACCGACGCCTCAACAGGGCAGGCGGCAC CAACCGGGAGCGTACAGGTGGAGCGTTTTCTACTCGCTGACACGAAACGA TGCCACCAACACACTACAACGCTCAAAACAGAAACTTGGTGCTTTGTTGC TCTCGATGTCAAGAGCACTACACGCAGTGTATATGATGTGTACAAATCCA GAGAGGTCTTTCGGTGTGCGACCCTCAAGGTGTACCAAGGCACGAGTATC TTCGCCGAACACGCCCTCTTAGAGGAACCATCGGGCCTCTGCGCCTTTCA CGGGCTTGACGACAACATTACCAGCGGAGGAGGATCGCCCGCCGTAGCTG TGGCTGCCGGGCCTTATATATTCATATACAAGTGAGCGGCGCGGGCAAAA AAGGGAAAACCCATCGATTTGAACCGTTTGTGAAGAGCCCGGCTTTGCGC TCCAGGAACGCTGCATCGATCGCAAAACGTGGCAGATCAGTAGGCGATTG TCGGGGTCGCACAACCGGTAGCCTACTCTGGAAGTTCATGATCAGCCTTT TCCGTCTGTTATCGGGGCCAACCTTAATCCGCACCGACTGGCGGTGAATT TAGCACCAAACGGACAACAACACGACCCCTTCGATCCTCTCCCTTGTACT GGTTTGTGAAAAAGGAACTTGCGGCCGTACTTTAAGTTCACAGCGCCACT AGTGGAGCCGTCGGCCGAGGAGGTGGACCTATGGACTAGATACCGGAAGG ACGATGTGGATGCGAACACGCTCAAGAATCTCCTCACCAAGGTCAGGAAA AGTGCACTTTCTTGGTATTCTTTTCACTAAGGTGCCGGTGAACACACTCA AGATTAATTCTCCCCATACGGTAGATGCAAGAAGACCATTCCGTTCTCAG AGCAATTCACAAAGTTTGCCCAGAGTTTTACAAGGCTTTTCGGATGTCGT TTCGAATCTTGATCACCACTGTGTAAGTGTTTTCAAAGAGCTGTCACGGA GGTGTTGAGAGTATCGATGCATGAAGGGGGTAAGCATCGTCTCCTACGAG ACTAGGAGAGCGGCTAGCGTATGCGCACCGGAGGGAATGTCCCCCACGAA AGTCTTGGCTCAGGATAAGAACCAACGAAAGGATGTGAAAAGATTTAGTC GCACTATAAAGCTTGGATAAAACTTGGTTACCAACCATTGGTGTAGCAGC AACATTTTCGCCCGAACGTGCCGTGCTCTGTACGTCAACACCAAACCAAC CTATAGAGCGAGGTGGGGGGATGAGAGGTGGATTTGGTAGGTGTGAGTCG AAACAACGGAGGCAACGAAATGATACCGCGAAGTAGAGTTTTGGTTGCTT CACTTTTTTCAGGCCAGAAAGGTATCGAGGTTCACTCGTTCGTGCAATTG AAGCAACTTTACTTCACTCTTCTGTCTCGCCTATCACGCTCCACGACGGT TTCGAATCAAGGCAAGAGAGGACGGGGTGCGACTTGGGCCGCTGTCGACT GACTTCTTAGCGGCAGCATCAACTTTCGAAGAATCTCAGAACTTTCTGTC GGCGAGAGGGGGAAGCGAGCCCCTTTCCCGCACAACGGTCATCACGTGTA TAACGAGAATGAAGAGGTTGCGTCGTAAACAGTAGAGCTAGTGGCCACAT GCCTTGGGCGTAGAACCCTCAGTTTCGGAACTCGTTGCAAGATCAAACGT ACTCAGTAGCGAACATGGTTCAATTCGCGTAGAAGCGAGGGGGAGAAGGA GAAAGAGAGAGAAAAGTCGTGCTCATCTAGAGTCATGTGTGGAATCGACA ATGGGGGTTGTTTTAACTTCGATCACATATCAGCCACAGAGTCGTCATTC ATATGTGTTGCTGTTTTACCCTTTCAACCGAGTTTTCTTTCGATCCTACC ATATTATGCCATGGACCCTCCCCCCGCCACTCCCTCACCATTGTTGCGAC TCTTGTGGATACAGGGTGGCTGAAGCAGCAGTTATTGTAGCTTTTGCTGT AGCCAACTACGCGCTAACACCTCGGCGACTTTTGAATCAAATTTGGGGTG GCCAGGGCAAGAGATGAGGAGGGTGCTCCGGTGTGCCTTCTGGCTGGGAC GGAGGACGGCCAGCTAGTCGTCCTTGACCCACCCTGTGAGATGAGATAAT TCCCTTCTTTCTCGTTCTCGTTTGATTTGACAGTCGGAAAATGAGCGGGA AAAATCTGCAGCATGTGCATTCGGAAGTTTCGATGGCTTACCCCACGGCA GGCAAAACAAGACGAGAAGGCTATGCAAGACTGTAGATGGAGTAGGTTCC GCGCTCCTCACAAGATTTGTTTCGTCGAGGTTGAAAACAAATGAGATTTC CCGACTCAACGAGGAAGAGGACGTTGGTCAGTCGCGAGAAAGCTTTACAC ACAGGAACACGAATTGCAGTGTTTCCGAGCTTTGTGTCGCGAAAGTCGAA GTATTGTTGTGAGTAGATCCACACCAGGAACGGCATATGTGACTCCGTGC GGTATCGAAGAGTAGCCAAAGTTACGAAAGATTGGTGCAGATGGATAGCA TGGCAGCATTTTGAGTGGAACAAAAAGCGGAGCCATACTTTGGGGATGGT CCCCTAAGCGAGGGTGGGCAAAGTGCTGCGGCCGCTATCCGATAAGTAAA AGATTTGTTACTAAACAAGCTTTTCGTCTCTCTCCCCTCTCCTCCCTCTT CGCCCCACCCTTTCATGAGCAGGCAATGTCATTACCACGGCTCAGCTACC GCGGGGTGCTGTGCCAGCGTTCCTAGCCGTAGGAGGCTTATTTGACACGG ACTGGAGGCTGGCGGTGGCCTGTAGAAATGGATGCATCTACACGATCAAG GTACACCTACTCTTTCAGTTCGTTATAAACCAAAATTAGTAATACAAATA TTTTTTCCAAGGCGCACTCGGCGACAGCCGCCGACTTGGAGTTTCAAATA TAATTCAAACCAAAATCAGTTTCGATCAATAGTCCCAATGTGGGGCGGTA TGCCGGTATGCTAGACTAGTACCTTGAACTCAATTCGGGGAGACGCTTGA GCGCGGATTGGGATGCGAAGATATTTCTTGGTGTCACAGGTCATCTCACG CGAAGCCACCCTTCGGAACATAGTCCGATTCGTCGATGCTCTCCTATCCC CCTTTGAAGCCCCGCTCACAGTCTTGTTTTTTGAAACGTTCACACGTTTT GCGGTGTAACAACCTGCCTACGATGCACCTACTTGTGAAAGAGGGGACAC ATGCAAACTTCGCCCTAGTGTACAGTATGTACACCCGCTCCAGGCGACGT ACCCGACGACAGGCTTCGGTTTTCGGCAGGGAAGTTTGCCAACGGGACAA CGCGATCACGGAAGAGAAATTAATTCTTCGATATTTTCAACTGTTTTCAC CGAAATGTTGTTACGACGACGGAAACGTATTCATATGGTGGCTGGCAGTA GCAGCCGAAACGGAGAGCTACAACGGTCTGGCGTTATGGAGTGTTTTCTC ATCATCTTGTTCCCGCGTTTCCCGCTAGAACGGCGAGGTGGCAAGGACAG CTGTGGTGACCGGTACCGTCATTCGCTTGGAGGCGACACCCTGCGGCCTT GCCAGGCTCCCGAGGCAGGTATGGTAACTTCCACCGTCGTGGCTTTCTTC GTACAAAGCTCCGTGTGCGGTTGATCCCGAAGGCCACTGATGCGATGTAC TGCAACATCAATCCGAAAATATTCATCCGACACGCCATGCACATCCCTGC ACACCGAAACCCCTCGAATATCATGTCGCCCAACGTATGCATGCACCTAG CACCAACAATGATGAACAAGCTTGAACGCCGCAAACGTAGCCGTTCAGTG GGCGTCCATGTTTCTGAGAAACAGTCTCAAGTTAGGTCACGAACTCTCCT CAACTCAAACCACCAATTCTGAGTCTCTACTACCACAAGAGCCTTTTCGA CACCAAAGCCGAAAGAAATTCCCGTGCGTCAGCGCAAGCGGGAGGTAGTC ACAGTTGCACGTACTATAGTATTACCGTAGTCGACTTTGTCCCTCGATTC TGGCAGGTTGTGACTTTGTTGGACCAGCGTAGTGATTACTGTTACATATT AACCTACCGCTCGCCACGAAAATCTGTTGCGCCGGACGGTAGATTTATGC CGCAACCACAGACCACAATCTCCATGCTTACCACCTCAAAGGGAGGAGGG ATTTCTCGCTCAAGATGCCGGCCCTCGTGACCCAACTTGAACCAATGCAA ACCAGGTGTGGTGCGTGCATGCAAACCAGTTCATTAGAGAAAGTGGACGT GCGGGTCAAGCAGTAGCAGGTGGAAGATCGGGCTCAAAACGGGGCCGCGA CGTAGATTCAACTTTGGTCGGCCATAATCGTTGCGCCCACACTAAAAAAC TTGACGCCAGGGTGGTATGCACGACGATCCAAACCGTTGCTGTTGTCGTT ACCCTTCGTTGTCGTGGCCGTGGTCATGGTCATGCTCCTGGTCATCAAAA GCATTGCTGTTGTTGTCTGAATGTTTCAAGACTACTCGACATTGCTCATA ACAGGTCAACCACGTGTCTCCTAGTGGCCCTGGCCGACGGCGACATTCGC CTGTACGGCGACGAAAGAAACCTACTGCACACCCTAAAGACTCAAGAACC GATCGCGGCCCTGCGGTTCGGACCCTACGCCCGAGAAGACGGAGCGCTCG CGGTCATTTCCACAGAAGGTACAGCGTATACTGTTCACCTACACACGTAC GTACCTGCTCGCACGCATGTTTTACGCAAAGCGTGACGAAGTACAGCACA TACCCCCTCGCCACAAGTGTTGTGGTTGTCGAAAATGTTTTTCATTCGAG CTTATGCGGGATGGCTCGTCTCCCTCAATGTATCCGCTTGTTTTATCCTT TACGCAGATAGAGCCGCTCGATATTTCACGGGACTGTCTCTTCCGCTTGG CATCTTTATGTTGACGATCGAAAGATCGGTACTCCAAAAAAGAACGGCCA CTGCATTTCCACCCTCCACGGTGCACCGTTCCGTCATTATATTCACCGTC CGGATGCACACATACGCAGGGAAGTTGACAATATTCATGCTGAACCGCAA GGCGGATCTGAGGAAGACACCCGGGGGGACCGCGAACGGCCGTCCCCCGG AACAGGACATCCCGCTCAAGGTACATCGAGTAACGCGGCTCCTGTTGTCG AGTATCACGATATCGCGAGTCGAGTTGTACGGTAGAGAGGTAGTGATTTT TTGTTTGTTTTTGTTGCTACTGCCTTAAATCAACCTCGAGTTGCTGAAAC CGAATCTGTCTAGGACATCATATCACGAACCAGGCCCCTTGACCCATGTC TGCGCCAACGCAGATCTGCCTTATCCCAGAGGCAGTCGGGAATCAACAGT CATTAGTATTCGAGGAAAGCCCCGGAGACGGAAAGAGGCCCACCAATTTC TCCCGCGACATGAGAAAAGCAAAGCACATTGTCTTACTTTGAAAGGGAAC AATCCCCACACATATCGTCGACAGCGAATAGAAGAAGCGCGTTGTTCCTC GTCCCGAAATTCACTCTCATCTCCCGACACGTAAGAACGAACGTAACGTT GCGCAGAAGCCGACCAGAAAAACACCAGCGAAAAACCAGCGAAAAACCAG GATTTTTCCGCGGGTCATGACCTTGCCTCCTGGCCGGGTCATCACGGTTT TGATATGGGACGGGTCGCGTCGGGTCAGGTCGGGCTGATTGTGTTGACCA CAAAGCCCCCCGAGAAAAATATAGCCCGAATCGCGATATCCATTTTCGCG AAACCAACAACAAGACAAGATTGTAAAGCCTCCACCCACAACAAGGCCTA CTTGGCGCGGAACGTTTCCACAAAAACGAACGAAAACAGGTCCCGAAGAA GACAAAGCTGTACGTGGAACAGACGCAGCGCGAGAAGCTGCAGGCCGGAG ATATCCACCGATCGTTCCAGAAGGATCTCTGCCGCCTGAGGCTCACCGCC GCCCGAGCTTACGTCGGAACGATAACGGACGGGCAACAGGGGGTCAGCGC AGTCGGAGGCGCGGCATCGCTCAGGCTGCACGCGCAGTGTCAAGGACTAG TGAGAGAAGACTTGGGTAGCAGTTGGTGTGTCCCTCTTCGCTGAGTACCA TTGGGGAGGGAAGTTGGTTTGGTACTTCGCCGTGAAGCTCTGCGTGCGTG CGCAGCAAAACAAAACAAGATGTCGGAGTCGTCCCACCATTTTGCTGAGT AGCCCTTCGTAGGAGTGACGCTCCGTGCCCCTCTTTATGGTGCAATAGCA TGCAGAGCACACGCGCCAAAGTTACACAGTAAACCCACACAATGCAGCAG AGCGAGAGGTGACGGTCAATCTGGAGTGCGAATAGTCTGTCAGGCGCCGC TTCAAACCCTACCGTCCTGCTTCCTCCCCACCCTGCTCCGATTCAAGGGT CCAAACTTCTCGATAAAGTTGGAGCTTCAGAATCATGGGGAACGGGCCCT GACCAACCTCCTCGTGGCGTTCACGTACGATCGAGACACGTACAATATGG AGAGCGGCCAGTTTGTTGTGCCCGTTCTACTCCCGGTGAGTGTGAATGGG TGAGTGAATTCACTCTCGATCTAAACTCGGACCGTTCTGTTATGAAAGAT AACTCATCCTTTGGCAAAGCTCCAAGCGCTTCGATGACTTGTTGGATGTG TGGTAATTTTTTTTGGATCCGTACACCCATTATGAAAGTCGTTATTATAG GCTTCTTTGGAATACAGGCCCAGGGTAGCTCCTGCCTTGCTTCAATACCT CCAATACCCGACTTTGAATATTTGTCCACTAATTCCTTTAACGCATCGAA GGATGAAGGAATTTGACAGCTTACTTGTGCTGTCCTTCGGTTCAATTACA GGGTATCTCTCACCGTCACAAGATGGCAATCACCTCTATAGACGAGGGGG GAGCAGCGGGGTCCGTGAGAATACTCGTGCTTGGTTCTTCTGAGCCGTCA CCCCTGGTCTCCGCCCTTGTTAACATGCCTCTCAGCGAACTCACTGATTG GTGA
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig109:99157..107110+

>mRNA_P-lacustris_contig109.736.1 ID=mRNA_P-lacustris_contig109.736.1|Name=mRNA_P-lacustris_contig109.736.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3618bp|location=Sequence derived from alignment at P-lacustris_contig109:99157..107110+ (Pleurocladia lacustris SAG_25_93)
ATGTCCGATATCTTGGCTAGCGCCGCCAACGTTGATGACAACCCGTTCAC
TGAAAAGAGCCGTTTGGGCCCCTGGTTGGCGGCATGGCGTGATCCGGTGG
CAGGCCTCGCGTGTAACGGTGGATGCATGCAGATGTCCGATATCTTGGCT
AGCGCCGCCAACGTTGATGACAACCCGTTCACTGAAAAGAGCCGTTTGGG
CCCCTGGTTGGCGGCATGGCGTGATCCGGTGGCAGGCCTCGCGTGTAACG
GTGGATGCATGCAGTTCATGGACCTCGGCAGGAACGGAGACTACAAGCTT
GTCGTGGCATGCCGGGCAAGAAAGCTAAAGTTCATGGACCTCGGCAGGAA
CGGAGACTACAAGCTTGTCGTGGCATGCCGGGCAAGAAAGCTAAAGGTGT
ACCAAGGCACGAGTATCTTCGCCGAACACGCCCTCTTAGAGGAACCATCG
GGCCTCTGCGCCTTTCACGGGCTTGACGACAACATTACCAGCGGAGGAGG
ATCGCCCGCCGTAGCTGTGGCTGCCGGGCCTTATATATTCATATACAAGT
GTACCAAGGCACGAGTATCTTCGCCGAACACGCCCTCTTAGAGGAACCAT
CGGGCCTCTGCGCCTTTCACGGGCTTGACGACAACATTACCAGCGGAGGA
GGATCGCCCGCCGTAGCTGTGGCTGCCGGGCCTTATATATTCATATACAA
GAACTTGCGGCCGTACTTTAAGTTCACAGCGCCACTAGTGGAGCCGTCGG
CCGAGGAGGTGGACCTATGGACTAGATACCGGAAGGACGATGTGGATGCG
AACACGCTCAAGAATCTCCTCACCAAGGAACTTGCGGCCGTACTTTAAGT
TCACAGCGCCACTAGTGGAGCCGTCGGCCGAGGAGGTGGACCTATGGACT
AGATACCGGAAGGACGATGTGGATGCGAACACGCTCAAGAATCTCCTCAC
CAAGGCAAGAGAGGACGGGGTGCGACTTGGGCCGCTGTCGACTGACTTCT
TAGCGGCAGCATCAACTTTCGAAGAATCTCAGAACTTTCTGTCGGCGAGA
GGGGGAAGCGAGCCCCTTTCCCGCACAACGGTCATCACGTGTATAACGAG
AATGAAGAGGCAAGAGAGGACGGGGTGCGACTTGGGCCGCTGTCGACTGA
CTTCTTAGCGGCAGCATCAACTTTCGAAGAATCTCAGAACTTTCTGTCGG
CGAGAGGGGGAAGCGAGCCCCTTTCCCGCACAACGGTCATCACGTGTATA
ACGAGAATGAAGAGGGCAAGAGATGAGGAGGGTGCTCCGGTGTGCCTTCT
GGCTGGGACGGAGGACGGCCAGCTAGTCGTCCTTGACCCACCCTGGCAAG
AGATGAGGAGGGTGCTCCGGTGTGCCTTCTGGCTGGGACGGAGGACGGCC
AGCTAGTCGTCCTTGACCCACCCTGCAATGTCATTACCACGGCTCAGCTA
CCGCGGGGTGCTGTGCCAGCGTTCCTAGCCGTAGGAGGCTTATTTGACAC
GGACTGGAGGCTGGCGGTGGCCTGTAGAAATGGATGCATCTACACGATCA
AGGCAATGTCATTACCACGGCTCAGCTACCGCGGGGTGCTGTGCCAGCGT
TCCTAGCCGTAGGAGGCTTATTTGACACGGACTGGAGGCTGGCGGTGGCC
TGTAGAAATGGATGCATCTACACGATCAAGAACGGCGAGGTGGCAAGGAC
AGCTGTGGTGACCGGTACCGTCATTCGCTTGGAGGCGACACCCTGCGGCC
TTGCCAGGCTCCCGAGGCAGAACGGCGAGGTGGCAAGGACAGCTGTGGTG
ACCGGTACCGTCATTCGCTTGGAGGCGACACCCTGCGGCCTTGCCAGGCT
CCCGAGGCAGATTTATGCCGCAACCACAGACCACAATCTCCATGCTTACC
ACCTCAAAGGGAGGAGGGATTTCTCGCTCAAGATGCCGGCCCTCGTGACC
CAACTTGAACCAATGCAAACCAGATTTATGCCGCAACCACAGACCACAAT
CTCCATGCTTACCACCTCAAAGGGAGGAGGGATTTCTCGCTCAAGATGCC
GGCCCTCGTGACCCAACTTGAACCAATGCAAACCAGGTCAACCACGTGTC
TCCTAGTGGCCCTGGCCGACGGCGACATTCGCCTGTACGGCGACGAAAGA
AACCTACTGCACACCCTAAAGACTCAAGAACCGATCGCGGCCCTGCGGTT
CGGACCCTACGCCCGAGAAGACGGAGCGCTCGCGGTCATTTCCACAGAAG
GTCAACCACGTGTCTCCTAGTGGCCCTGGCCGACGGCGACATTCGCCTGT
ACGGCGACGAAAGAAACCTACTGCACACCCTAAAGACTCAAGAACCGATC
GCGGCCCTGCGGTTCGGACCCTACGCCCGAGAAGACGGAGCGCTCGCGGT
CATTTCCACAGAAGGGAAGTTGACAATATTCATGCTGAACCGCAAGGCGG
ATCTGAGGAAGACACCCGGGGGGACCGCGAACGGCCGTCCCCCGGAACAG
GACATCCCGCTCAAGGGAAGTTGACAATATTCATGCTGAACCGCAAGGCG
GATCTGAGGAAGACACCCGGGGGGACCGCGAACGGCCGTCCCCCGGAACA
GGACATCCCGCTCAAGGTCCCGAAGAAGACAAAGCTGTACGTGGAACAGA
CGCAGCGCGAGAAGCTGCAGGCCGGAGATATCCACCGATCGTTCCAGAAG
GATCTCTGCCGCCTGAGGCTCACCGCCGCCCGAGCTTACGTCGGAACGAT
AACGGACGGGCAACAGGGGGTCAGCGCAGTCGGAGGCGCGGCATCGCTCA
GGCTGCACGCGCAGTGTCAAGGACTAGTCCCGAAGAAGACAAAGCTGTAC
GTGGAACAGACGCAGCGCGAGAAGCTGCAGGCCGGAGATATCCACCGATC
GTTCCAGAAGGATCTCTGCCGCCTGAGGCTCACCGCCGCCCGAGCTTACG
TCGGAACGATAACGGACGGGCAACAGGGGGTCAGCGCAGTCGGAGGCGCG
GCATCGCTCAGGCTGCACGCGCAGTGTCAAGGACTAGGTCCAAACTTCTC
GATAAAGTTGGAGCTTCAGAATCATGGGGAACGGGCCCTGACCAACCTCC
TCGTGGCGTTCACGTACGATCGAGACACGTACAATATGGAGAGCGGCCAG
TTTGTTGTGCCCGTTCTACTCCCGGGTCCAAACTTCTCGATAAAGTTGGA
GCTTCAGAATCATGGGGAACGGGCCCTGACCAACCTCCTCGTGGCGTTCA
CGTACGATCGAGACACGTACAATATGGAGAGCGGCCAGTTTGTTGTGCCC
GTTCTACTCCCGGGTATCTCTCACCGTCACAAGATGGCAATCACCTCTAT
AGACGAGGGGGGAGCAGCGGGGTCCGTGAGAATACTCGTGCTTGGTTCTT
CTGAGCCGTCACCCCTGGTCTCCGCCCTTGTTAACATGCCTCTCAGCGAA
CTCACTGATTGGTGAGGTATCTCTCACCGTCACAAGATGGCAATCACCTC
TATAGACGAGGGGGGAGCAGCGGGGTCCGTGAGAATACTCGTGCTTGGTT
CTTCTGAGCCGTCACCCCTGGTCTCCGCCCTTGTTAACATGCCTCTCAGC
GAACTCACTGATTGGTGA
back to top