mRNA_P-lacustris_contig1089.728.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1089.728.1
Unique NamemRNA_P-lacustris_contig1089.728.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1089.728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1089contigP-lacustris_contig1089:41755..42172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size420
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815363.0245275-CDS-P-lacustris_contig1089:41754..421711622815363.0245275-CDS-P-lacustris_contig1089:41754..42171Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1089 41755..42171 +
1693493500.7621074-CDS-P-lacustris_contig1089:41754..421711693493500.7621074-CDS-P-lacustris_contig1089:41754..42171Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1089 41755..42171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1089.728.1prot_P-lacustris_contig1089.728.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1089 41755..42171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1089.728.1

>prot_P-lacustris_contig1089.728.1 ID=prot_P-lacustris_contig1089.728.1|Name=mRNA_P-lacustris_contig1089.728.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=139bp
AFGIRGVTLRLYVVLKRESSKNNTRKYPNINRVFLSLVLHDQDGVKAHPS
AGTTKGGGWHCQRLTLCVPKGLVEDRRCWGSSFTPREGTGTEKRTTRSTL
ASTVELSSKGTCRAAAGIGDTCHPRGLYIPSSVDPSSRE
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mRNA from alignment at P-lacustris_contig1089:41755..42172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1089.728.1 ID=mRNA_P-lacustris_contig1089.728.1|Name=mRNA_P-lacustris_contig1089.728.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=418bp|location=Sequence derived from alignment at P-lacustris_contig1089:41755..42172+ (Pleurocladia lacustris SAG_25_93)
GCATTTGGCATCCGCGGCGTGACCCTCCGTCTGTACGTGGTTTTGAAACG
AGAAAGTTCAAAGAATAATACAAGAAAGTACCCGAATATAAATCGTGTTT
TCCTATCACTCGTGTTGCATGATCAAGACGGCGTCAAAGCACATCCATCC
GCCGGAACGACGAAGGGTGGGGGTTGGCATTGTCAACGTCTTACGTTGTG
CGTTCCGAAAGGTCTTGTCGAAGACAGACGCTGTTGGGGGAGTTCTTTCA
CGCCAAGGGAAGGAACCGGTACTGAAAAACGAACGACCCGCTCTACTCTC
GCCAGCACCGTTGAACTATCTTCGAAAGGCACATGTCGCGCAGCGGCAGG
GATTGGTGATACGTGTCACCCTCGAGGGCTCTACATCCCATCCTCAGTAG
ACCCCTCGTCTCGGGAAG
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Coding sequence (CDS) from alignment at P-lacustris_contig1089:41755..42172+

>mRNA_P-lacustris_contig1089.728.1 ID=mRNA_P-lacustris_contig1089.728.1|Name=mRNA_P-lacustris_contig1089.728.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=834bp|location=Sequence derived from alignment at P-lacustris_contig1089:41755..42172+ (Pleurocladia lacustris SAG_25_93)
GCATTTGGCATCCGCGGCGTGACCCTCCGTCTGTACGTGGTTTTGAAACG
AGAAAGTTCAAAGAATAATACAAGAAAGTACCCGAATATAAATCGTGTTT
TCCTATCACTCGTGTTGCATGATCAAGACGGCGTCAAAGCACATCCATCC
GCCGGAACGACGAAGGGTGGGGGTTGGCATTGTCAACGTCTTACGTTGTG
CGTTCCGAAAGGTCTTGTCGAAGACAGACGCTGTTGGGGGAGTTCTTTCA
CGCCAAGGGAAGGAACCGGTACTGAAAAACGAACGACCCGCTCTACTCTC
GCCAGCACCGTTGAACTATCTTCGAAAGGCACATGTCGCGCAGCGGCAGG
GATTGGTGATACGTGTCACCCTCGAGGGCTCTACATCCCATCCTCAGTAG
ACCCCTCGTCTCGGGAAGCATTTGGCATCCGCGGCGTGACCCTCCGTCTG
TACGTGGTTTTGAAACGAGAAAGTTCAAAGAATAATACAAGAAAGTACCC
GAATATAAATCGTGTTTTCCTATCACTCGTGTTGCATGATCAAGACGGCG
TCAAAGCACATCCATCCGCCGGAACGACGAAGGGTGGGGGTTGGCATTGT
CAACGTCTTACGTTGTGCGTTCCGAAAGGTCTTGTCGAAGACAGACGCTG
TTGGGGGAGTTCTTTCACGCCAAGGGAAGGAACCGGTACTGAAAAACGAA
CGACCCGCTCTACTCTCGCCAGCACCGTTGAACTATCTTCGAAAGGCACA
TGTCGCGCAGCGGCAGGGATTGGTGATACGTGTCACCCTCGAGGGCTCTA
CATCCCATCCTCAGTAGACCCCTCGTCTCGGGAA
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