mRNA_P-lacustris_contig1086.716.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1086.716.1
Unique NamemRNA_P-lacustris_contig1086.716.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1086.716.1 vs. uniprot
Match: D7FNT6_ECTSI (Derlin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT6_ECTSI)

HSP 1 Score: 451 bits (1159), Expect = 4.970e-154
Identity = 227/294 (77.21%), Postives = 251/294 (85.37%), Query Frame = 1
Query:    1 QPRKSMPLGFVSGAGGSSPEELFRSIPPVSKVLIVGMVGTMFSIVMGLCAPLDYYLSWPLVWNKFHLWRLFTSGIFPGVPSYPSLMTIFSIGMFSMRYEKDGFSMGGGGGSADFAYMLLFGFVCIEASLLLLFYQPFLIFTEALMFYICYVWSRKNPDMSVSFWGIMINALYVPWVMVAMRVLLGSSVFMSLLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVAMQRGGGA-------------APGAXXXXXXXAVQPPRDIPRTRGGAGWGTGRTLGSS 843
            Q +K+MPLG  +G+GGSSPEELFRSIPPVSKVLIVGMVGT+ S+V+G+C+P  Y LSWPLVWNKFHLWRLFTSG+FPG PSY +LM + S+GMFS+RYEKDGFSMGGGGGSAD+AYMLLFGFV IE SLLLLFYQPF+IFT A+MFYICYVWSRKNP MSVSFWGI+INALYVPWVMVA+RV+LG S+FM+LLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWG EGSGV MQ GG               APGA        V+PPRDIPRT GG+GWGTGRTLGSS
Sbjct:   14 QKKKNMPLGVFNGSGGSSPEELFRSIPPVSKVLIVGMVGTILSVVLGVCSPYQYALSWPLVWNKFHLWRLFTSGMFPGTPSYETLMLMISMGMFSIRYEKDGFSMGGGGGSADYAYMLLFGFVGIETSLLLLFYQPFMIFTTAIMFYICYVWSRKNPGMSVSFWGIIINALYVPWVMVALRVVLGHSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGHEGSGVTMQAGGXXXXXXXXXXXAGMPAPGA--------VRPPRDIPRTGGGSGWGTGRTLGSS 299          
BLAST of mRNA_P-lacustris_contig1086.716.1 vs. uniprot
Match: A0A6H5KW67_9PHAE (Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW67_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 1.850e-101
Identity = 158/190 (83.16%), Postives = 169/190 (88.95%), Query Frame = 1
Query:  289 RYEKDGFSMGGGGGSADFAYMLLFGFVCIEASLLLLFYQPFLIFTEALMFYICYVWSRKNPDMSVSFWGIMINALYVPWVMVAMRVLLGSSVFMSLLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVAMQRGGGAAP-----GAXXXXXXXAVQPPRDIPRTRGGAGWGTGRTLGSS 843
            RYEKDGFSMGGGGGSAD+AYMLLFGFVCIEASLLLLFYQPF+IFTEA+MFYICYVWSRKNP MSVSFWGI INALYVPWVM+AMRV +G+S+FM+LLGIAVGHLFYFLVDVLPDLH+IDLLQTPQFLVNMLGWGREGSGV MQ GGG A      GA        V+PPRDIPRT GG+GWGTGRTLGSS
Sbjct:   10 RYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGIHINALYVPWVMIAMRVAIGASIFMALLGIAVGHLFYFLVDVLPDLHEIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGVPAPGVVRPPRDIPRTGGGSGWGTGRTLGSS 199          
BLAST of mRNA_P-lacustris_contig1086.716.1 vs. uniprot
Match: A0A835YYA5_9STRA (Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA5_9STRA)

HSP 1 Score: 237 bits (604), Expect = 5.220e-71
Identity = 135/274 (49.27%), Postives = 174/274 (63.50%), Query Frame = 1
Query:   22 LGFVSGAGGSSPEELFRSIPPVSKVLIVGMVGTMFSIVMGLCAPLDYYLSWPLVWNKFHLWRLFTSGIFPGVPSYPSLMTIFSIGMFSMRYEKDGFSMGGGGGSADFAYMLLFGFVCIEASLLLLFYQPFLIFTEALMFYICYVWSRKNPDMSVSFWGIMINALYVPWVMVAMRVLLGSSVFMSLLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVAMQRGGGAAPGAXXXXXXXAVQPPRDIPRTRGGAGWGTG-RTLGS 840
            +G V  AG  SPEE F+S+PPVSKVLI  +VG+   +++G+    +  L W  + +KF +WRL+T+ +F G PS+P LM +   G +S+RYEKD F  GGGGGSAD+A+ML FG   +    L  F  PFL  +  LMF I YVWSRK PD+  SFWGI + ++YVPWVMVA  +L G+S F  LLGI VGHL+YFLVDV+PD    D+L TP FL ++ G+G   +GV  QR    APG           PPR  PR  GG  WG+G R LG+
Sbjct:    7 IGAVGAAG--SPEEWFKSLPPVSKVLITSLVGSTVLVMLGVIDAYNLALLWSPLRHKFEIWRLYTNAVFLGAPSFPFLMNLMIFGQYSIRYEKDAFDTGGGGGSADYAWMLAFGMAVLSGLSLAFFVVPFL--SIPLMFMIIYVWSRKVPDVPTSFWGITVQSVYVPWVMVAFNLLTGASAFNPLLGIGVGHLYYFLVDVVPDQFGKDVLTTPAFLTDLFGYGGLNTGV--QRF--PAPGH--------AAPPRGFPRPGGGHTWGSGGRPLGT 264          
BLAST of mRNA_P-lacustris_contig1086.716.1 vs. uniprot
Match: A0A7S2XX42_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX42_9STRA)

HSP 1 Score: 177 bits (449), Expect = 3.620e-48
Identity = 99/271 (36.53%), Postives = 161/271 (59.41%), Query Frame = 1
Query:   46 GSSPEELFRSIPPVSKVLIVGMVGTMFSIVMGLCAPLDYYLSWPLVWNKFHLWRLFTSGIFPGVPSYPSLMTIFSIGMFSMRYEKDG-FSMGGGGGSADFAYMLLFGFVCIEASLLLLFYQPFLIFTEALMFYICYVWSRKNPDMSVSF-WGIMINALYVPWVMVAMRVLLGSSVFMSLLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGRE---GSGVAMQRGGGAAPGAXXXXXXXAVQPPRDIPRTRGGAGWGTGRTLGSS 843
            G SP++ + S+P ++KV +   +    ++  G+      +L++PL+W KF  WRL T+    G   + +L+T + +  +S +YE  G F+ GGGGG +D+A+M++FG V +      +   PF+   + L+F++ YVWSR+ PD++VSF +G+ I ++Y PW  VA ++LLG+S FM+LLGIAVGHL+YFL +++PD +D ++L+TP F+++  G+G      +  A QRG     G          QP        GG  WG G  LG++
Sbjct:   10 GGSPQDWYNSVPFITKVWLTSTLAVTLAVNFGILPAGHLFLNFPLIWKKFQFWRLLTNFTCMGKLGFGTLITFYMLYSYSEKYETGGCFNTGGGGGVSDYAFMMMFGMVVMNIIGYFM-NTPFM--AQPLVFFVMYVWSRRFPDLTVSFMFGVKIQSIYAPWAYVAFQILLGNSPFMALLGIAVGHLYYFLAEIVPDQYDFEILKTPVFMIHYFGYGAYHPVNTAPAAQRGSVNGTGG---------QPANSSFPMPGGRQWGQGHVLGTN 268          
BLAST of mRNA_P-lacustris_contig1086.716.1 vs. uniprot
Match: A0A6H5KUK6_9PHAE (Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK6_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 4.100e-45
Identity = 79/105 (75.24%), Postives = 90/105 (85.71%), Query Frame = 1
Query:   16 MPLGFVSGAGGSSPEELFRSIPPVSKVLIVGMVGTMFSIVMGLCAPLDYYLSWPLVWNKFHLWRLFTSGIFPGVPSYPSLMTIFSIGMFSMRY----EKDGFSMG 318
            MPLGFV+G  G+SPEELFRSIPPVSKVLI+GMVGTMFSIV+G+C+P +Y LSWPLVWNKFHLWRLFTSGIFPG P Y +LM+IFSIGMFS+R+    EK  F  G
Sbjct:    1 MPLGFVNGGSGNSPEELFRSIPPVSKVLILGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGKPGYGALMSIFSIGMFSIRWSGHQEKSFFGAG 105          
BLAST of mRNA_P-lacustris_contig1086.716.1 vs. uniprot
Match: A0A7S0SWB6_9STRA (Derlin n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWB6_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.640e-44
Identity = 91/268 (33.96%), Postives = 154/268 (57.46%), Query Frame = 1
Query:   46 GSSPEELFRSIPPVSKVLIVGMVGTMFSIVMGLCAPLDYYLSWPLVWNKFHLWRLFTSGIFPGVPSYPSLMTIFSIGMFSMRYEKDGFSMGGGGGSADFAYMLLFGFVCIEASLLLLFYQPFLIFTEALMFYICYVWSRKNPDMSVSFWGIMINALYVPWVMVAMRVLLGSSVFMSLLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVAMQRGGGAAPGAXXXXXXXAVQPPRD--IPRTRGGAGWGTGRTLGSS 843
            G S ++ + +IP V+KVLI   V     +   L  P D  L W  +W+KFH+WRLFT  +F G  S+  LM    +   S++YE + ++ GGGG SAD+ Y++++  V +   L++ +Y  F+I ++ LM+ I YVWSR+  +  V+ +G     LY+PW+ + + +L+G+S+   L+GIAVGH +YFL++V+P ++++DL++TP+F ++++ +    +   +       P         A  P R    P    G  WG GR LG++
Sbjct:   11 GDSIQDWYNNIPFVTKVLITSTVVIGGLLTFQLIPPQDLILDWRFIWHKFHIWRLFTPFVFAGSFSFNFLMHTVVLYQNSLKYENNPYNTGGGGSSADYLYLIIYSIVLL---LVIAYYMNFMILSDPLMYVIVYVWSRRESESVVNMYGFKFKGLYLPWIYIGISMLMGNSIVPPLIGIAVGHSYYFLIEVMPTIYNVDLIRTPKFCIDIITYSTGRTPNVLSN----IPIPNLAAAPNAGAPVRGNGFPNLGTGHNWGRGRVLGAN 271          
BLAST of mRNA_P-lacustris_contig1086.716.1 vs. uniprot
Match: A0A7S2SNX6_9STRA (Derlin n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNX6_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.430e-41
Identity = 94/276 (34.06%), Postives = 148/276 (53.62%), Query Frame = 1
Query:   16 MPLGFVSGAGGSSPEELFRSIPPVSKVLIVGMVGTMFSIVMGLCAPLDYYLSWPLVWNKFHLWRLFTSGIFPGVPSYPSLMTIFSIGMFSMRYEKDGFSMGGGGGSADFAYMLLFGFVCIEASLLLLFYQ-PFLIFTEALMFYICYVWSRKNPDMSVSFWGIMINALYVPWVMVAMRVLLGSSVFMSLLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVAMQRGGGAAPGAXXXXXXXAVQPPRDIPRTRGGAGWGTGRTLGS 840
            M  G      G++P+E F S+PP+++ L+V ++ T  +   G+ +P   +L W  VW  F +WRL ++ +F G  S+P L+ ++ +  ++ RYE   F+ G GG SADFA+ML  G  C   ++   F+  PF+   + + F I YVW+RKNPD   S +     A Y+PW M+A  +L+G+ +++ L+GIA GH++YFL    P     D+++TP F++ +LG      G    R    AP A       A        R   G  WG+G  LG+
Sbjct:    1 MMRGMGRVGDGNTPQEWFYSLPPITRSLLVAVLATTAACSFGIVSPFQLHLDWTRVWRGFEIWRLASNFVFFGTFSFPFLINLYLLVQYASRYEVSPFNTGAGGSSADFAWMLTIG--CSLLAIASYFFGLPFM--GQPMSFMIMYVWTRKNPDEMTSIFFFKFQAFYLPWAMLAFNLLIGNDIYLPLMGIAAGHVYYFLHYTAPAELGRDIIKTPTFMIELLGGTPTTPGSFRPR---TAPTAPRAAAGGAAA------RPYAGHNWGSGNVLGA 263          
BLAST of mRNA_P-lacustris_contig1086.716.1 vs. uniprot
Match: A0A482RVM1_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVM1_9ARCH)

HSP 1 Score: 156 bits (394), Expect = 1.520e-40
Identity = 81/212 (38.21%), Postives = 127/212 (59.91%), Query Frame = 1
Query:   46 GSSPEELFRSIPPVSKVLIVGMVGTMFSIVMGLCAPLDYYLSWPLVWNKFHLWRLFTSGIFPGVPSYPSLMTIFSIGMFSMRYEKDGFSMGGGGGSADFAYMLLFGFVCIEASLLLLFYQPFLIFTEALMFYICYVWSRKNPDMSVSFWGIMINALYVPWVMVAMRVLLGSSVFMSLLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNML 681
            G + +  F S+P ++KV +V  + T   +   +       L WP V NKFH WRLFT  +F G  S+   +    +     RYE + F+ G GG SADF ++LL   + +   L+L +     + +E L++ I YVWSR+ PD  ++ WG    ALY+PWV +A+R+++G ++   L+G+AVGHL+YFLV VLP  H +DL++TP+F V+++
Sbjct:    5 GDTLQGWFSSVPLITKVFLVSTLITGAGLSFKMLDGGSLVLLWPYVQNKFHFWRLFTCFVFAGPFSFNFALHTLVLYENCKRYESNPFNTGAGGNSADFLWLLL---IAMTVLLVLAYIFDMYVLSEPLLYVIMYVWSRREPDAMLNIWGFRFKALYLPWVYIAIRMVMGGAITEPLIGVAVGHLYYFLVQVLPATHGVDLIKTPKFCVDIV 213          
BLAST of mRNA_P-lacustris_contig1086.716.1 vs. uniprot
Match: A0A8J2WZQ4_9STRA (Derlin n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZQ4_9STRA)

HSP 1 Score: 155 bits (393), Expect = 4.200e-40
Identity = 103/276 (37.32%), Postives = 158/276 (57.25%), Query Frame = 1
Query:   22 LGFVSGAGGSSP-EELFRSIPPVSKVLIVGMVGTMFSIVMGLCAPLDYYLSWPLVWNKFHLWRLFTSGIFPGVPSYPSLMTIFSIGMFSMRYEKDGFSMGGGGGSADFAYMLLFGFVCIEASLLLLFYQPFL---IFTEALMFYICYVWSRKNPDMSVSFWGIMINALYVPWVMVAMRVLLGSSVFMSLLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVAMQRGGGAAPGAXXXXXXXAVQPPRDIPRTRGGAGWGTGRTLG 837
            LG V G G ++P ++   S+PPV++V  V   GT   I  GL  P     SWP V ++F +WRL T   F G  S+P L+ ++ +  +S  YE   ++ GGGG +AD+ +M+  G      +L+L     F+      +A+++ + YVWSR+NP   VS +G  + A+ +PW + A  +++G+S+ + L+GI VGHL+YF ++VLPD + +D+++TP+ L++  G G      A+  G     GA XXXXXX   PPR      GG  WG GR LG
Sbjct:    7 LGRV-GQGPANPVKDWLESLPPVTRVWFVASFGTTCLISFGLVDPYRLLWSWPAVRHRFEVWRLITPYFFFGGFSFPFLINLYLLQQYSKGYEISPYNTGGGGDTADYIWMMFLG------ALMLCGVSEFMGQVAPAQAMLYLVLYVWSRRNPTQQVSLYGFPVQAIMLPWALCAFNMVIGNSLLLPLMGIGVGHLYYFAIEVLPDAYGVDIVKTPRALIDACG-GXXXXXXAVAPG---VRGAAXXXXXXXXAPPR------GGHNWGGGRVLG 265          
BLAST of mRNA_P-lacustris_contig1086.716.1 vs. uniprot
Match: A0A5D6YDW5_9STRA (Derlin n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDW5_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.700e-40
Identity = 94/260 (36.15%), Postives = 133/260 (51.15%), Query Frame = 1
Query:   58 EELFRSIPPVSKVLIVGMVGTMFSIVMGLCAPLDYYLSWPLVWNKFHLWRLFTSGIFPGVPSYPSLMTIFSIGMFSMRYEKDGFSMGGGGGSADFAYMLLFGFVCIEASLLLLFYQPFLIFTEALMFYICYVWSRKNPDMSVSFWGIMINALYVPWVMVAMRVLLGSSVFMSLLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVAMQRGGGAAPGAXXXXXXXAVQPPRDIPRTRGGAGWGTGRTLG 837
            E  F ++P +++  +     +     +G   P   YL + LVW+KF LWRL TS ++ G   +P LM +  +  ++ R E+D F  GGG  +ADFA+ML FG V +     + F+        +L+F I YVWSR+NP M V+ WG     LY+PW ++A  VL+G +  M + G+  GHL+YFL++VLP      L+QTP F  NM             +G GA P         A  P        GG  WGTGR LG
Sbjct:    6 EAWFHAMPTITRFYLSACFLSTCLSALGFLQPRSLYLDFDLVWHKFQLWRLPTSFMYLGGFGFPFLMQLMILNNYASRLEEDPFPSGGGP-TADFAFMLFFGAVVLWV---IAFFMALPFLGSSLIFMIVYVWSRRNPTMPVAIWGFQFEGLYLPWALIAFTVLMGGNPMMDIFGVIAGHLYYFLLEVLPTTKGWTLIQTPSFFANMF---------PSPQGTGATP------IIGARGPAGAAAAAGGGYTWGTGRPLG 246          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1086.716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNT6_ECTSI4.970e-15477.21Derlin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5KW67_9PHAE1.850e-10183.16Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
A0A835YYA5_9STRA5.220e-7149.27Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S2XX42_9STRA3.620e-4836.53Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 Rep... [more]
A0A6H5KUK6_9PHAE4.100e-4575.24Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
A0A7S0SWB6_9STRA1.640e-4433.96Derlin n=1 Tax=Chromulina nebulosa TaxID=96789 Rep... [more]
A0A7S2SNX6_9STRA1.430e-4134.06Derlin n=1 Tax=Rhizochromulina marina TaxID=103483... [more]
A0A482RVM1_9ARCH1.520e-4038.21Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A8J2WZQ4_9STRA4.200e-4037.32Derlin n=1 Tax=Pelagomonas calceolata TaxID=35677 ... [more]
A0A5D6YDW5_9STRA4.700e-4036.15Derlin n=1 Tax=Pythium brassicum TaxID=1485010 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1086contigP-lacustris_contig1086:17528..20508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score449.5
Seed ortholog evalue1.1e-123
Seed eggNOG ortholog2880.D7FNT6
Preferred nameDER1
KEGG koko:K13989
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.ubiquitin-dependent ERAD pathway
EggNOG OGsCOG5291@1,KOG0858@2759
Ec32 ortholog descriptionDerlin
Ec32 orthologEc-12_003430.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons3
Model size1603
Cds size831
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1086.716.1prot_P-lacustris_contig1086.716.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1086 18285..20493 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.0334096-UTR-P-lacustris_contig1086:17527..182841622815361.0334096-UTR-P-lacustris_contig1086:17527..18284Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1086 17528..18284 -
1693493499.666654-UTR-P-lacustris_contig1086:17527..182841693493499.666654-UTR-P-lacustris_contig1086:17527..18284Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1086 17528..18284 -
1622815361.0801234-UTR-P-lacustris_contig1086:20493..205081622815361.0801234-UTR-P-lacustris_contig1086:20493..20508Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1086 20494..20508 -
1693493499.7042851-UTR-P-lacustris_contig1086:20493..205081693493499.7042851-UTR-P-lacustris_contig1086:20493..20508Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1086 20494..20508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.0436609-CDS-P-lacustris_contig1086:18284..185881622815361.0436609-CDS-P-lacustris_contig1086:18284..18588Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1086 18285..18588 -
1693493499.677852-CDS-P-lacustris_contig1086:18284..185881693493499.677852-CDS-P-lacustris_contig1086:18284..18588Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1086 18285..18588 -
1622815361.0544827-CDS-P-lacustris_contig1086:19192..194441622815361.0544827-CDS-P-lacustris_contig1086:19192..19444Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1086 19193..19444 -
1693493499.6852455-CDS-P-lacustris_contig1086:19192..194441693493499.6852455-CDS-P-lacustris_contig1086:19192..19444Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1086 19193..19444 -
1622815361.0678105-CDS-P-lacustris_contig1086:20218..204931622815361.0678105-CDS-P-lacustris_contig1086:20218..20493Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1086 20219..20493 -
1693493499.6924286-CDS-P-lacustris_contig1086:20218..204931693493499.6924286-CDS-P-lacustris_contig1086:20218..20493Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1086 20219..20493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1086.716.1

>prot_P-lacustris_contig1086.716.1 ID=prot_P-lacustris_contig1086.716.1|Name=mRNA_P-lacustris_contig1086.716.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=277bp
MPLGFVSGAGGSSPEELFRSIPPVSKVLIVGMVGTMFSIVMGLCAPLDYY
LSWPLVWNKFHLWRLFTSGIFPGVPSYPSLMTIFSIGMFSMRYEKDGFSM
GGGGGSADFAYMLLFGFVCIEASLLLLFYQPFLIFTEALMFYICYVWSRK
NPDMSVSFWGIMINALYVPWVMVAMRVLLGSSVFMSLLGIAVGHLFYFLV
DVLPDLHDIDLLQTPQFLVNMLGWGREGSGVAMQRGGGAAPGAAGMPAPG
AVQPPRDIPRTRGGAGWGTGRTLGSS*
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mRNA from alignment at P-lacustris_contig1086:17528..20508-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1086.716.1 ID=mRNA_P-lacustris_contig1086.716.1|Name=mRNA_P-lacustris_contig1086.716.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2981bp|location=Sequence derived from alignment at P-lacustris_contig1086:17528..20508- (Pleurocladia lacustris SAG_25_93)
CAACCGCGCAAAAGCATGCCTCTCGGGTTCGTAAGCGGCGCCGGCGGCAG CAGCCCCGAGGAGCTGTTTCGCAGCATCCCGCCTGTCTCCAAGGTGTTGA TAGTGGGAATGGTCGGCACGATGTTCTCCATCGTGATGGGGCTGTGTGCC CCGTTGGATTACTATCTCTCGTGGCCCCTGGTCTGGAACAAGTTCCATCT GTGGCGACTCTTCACTTCGGGCATCTTCCCGGGAGTGCCCAGCTACCCCT CTCTCATGACGATCTTCTCCATAGGAATGTTCTCCATGAGGTGGGTGGGA AGGTTGGCTGGTGTGCCACCAGGCATTCGTGTGGTTCGTATCGTGTGATG TGGTTTTTCAAGTGTGAGAGTGAAAGGAAGTATCTCAATGCAAAGTTTGT TGGGCGATCTAGTACTTATTGGCAGCGTCCAACAACAAATCTGGCGAGTA TTTGTTGTCTACGCGACTCGTTTGCCCTTTTCGGAGCATCTCTCTTTTGC CCGGAATGATCCTTGAGACATGGCCACCCGGGCTTGCAGGGCACAGCGGT TGCAGCCCACCGCTCGCTGTCGTGCAGATGAGATACGCCTCAAAACCATT TGGGTTGGGTTAGGATTATTGGAGATGGACGCCGTTCTCCAGACCACTGA TTGCCGGCACATTTGGTTTGCACGACTCCTTGCGCATCTTGCTCGCACGC GCGCTCATGGGCGTCTTTAATTTGCATCTACGGCGCTAACCTGCCGATCA ATGGGATCAAATCAACTTAGCGGAACAAATAACCCAATGTGACGTTTGTT AACCTCAAACCTGCCGACAGGGGGAGCTGGAGAGGAGACTGGACAGGACC AGCCCTCTCATACGTGTAGTATGCACTATGTGTGCGTGGGGGCCGACTCA ACTAGCAGCACCTTAGCATATGGTAGTTGATGAGGCAGCAGCTGCAGCAG CAGTAGCAGCAGCAGCTTTAACCGCAGCAGGCGACGAGGAACAGGGCATG GATTGACATACGTCTGACGTTTCGCGTGCTGTCGCGTTATTCATTTCGCC CCGTCGTGTGGCAGGTATGAGAAGGACGGGTTCAGCATGGGCGGCGGGGG CGGGAGCGCGGACTTTGCGTACATGCTCCTGTTCGGCTTCGTGTGCATCG AGGCCTCGCTGCTGCTGCTCTTTTACCAGCCCTTCTTGATCTTCACCGAA GCCCTCATGTTCTACATCTGCTACGTGTGGAGCCGAAAAAATCCTGACAT GTCGGTCAGCTTCTGGGGAATAATGATCAACGCTCTCTACGTGCCATGGG TGATGGTGGCGATGAGGTAGGGGGCCGCCTGCTCCAGTTCATGCCTGAAT GCGCATTATGTGACTAGAGGTACTCCGCGACGTAGAAAGCAACTCGACAA GCCAGGAGGACCGCGCTCAGGCAGCACCGGTACACGGGTTTCCGTTTGCC AAGGACACGTCAAAGTGTGTGGCACGCTCGTGTTACCGCTGTCAACATGT CAGGAATTTTCGCGCTAAAGATGATGTTGGGCGCGGTAAGCTTTTCCCCC AAACCGTCTGTTCTGATGCACAACCGCTCCTTGTACCGGGTCCCAAGGGC CCACCTCTCTCTCTGGTCTACATATATTGAAAACATGCAGCAGTGTACAT ATACTGGAGTATATATTTACATATGTCACGCTTGTCTCTCTGTGGGTTGC TACTTCGAAATTCAACAACGAGGAGCGAGTGACGCGAAACCAAAACGGCA TCGTCTTCCTTCTCCCCCCTTTCTCCCCTTCGTCCCTTCTTTCTTCGTGT GCACGCCTCCTTCCTTCTCCTCCCTTTTCTCCCCTTCTTCGTGTGCACGC CTCCTTCCTTCTCCTCTCTTTTCGCCCCTTCCTTATTCGTGTGCGCGCGT CCGTGCTTGCGAGCGCGTAGGGTGCTTCTCGGGTCGAGCGTCTTCATGTC CCTCCTCGGCATCGCCGTGGGTCACCTCTTCTATTTCCTCGTCGACGTCC TCCCAGACCTCCACGACATCGACCTCCTCCAGACCCCTCAGTTCCTGGTC AACATGTTGGGTTGGGGCCGCGAGGGATCGGGAGTGGCGATGCAGAGAGG CGGTGGGGCAGCGCCAGGGGCTGCAGGAATGCCCGCCCCCGGAGCCGTAC AACCGCCGCGGGACATTCCGCGAACCAGGGGCGGGGCGGGTTGGGGGACC GGGCGGACGCTCGGCTCTTCCTGATTTTCGAGAACGCATTACAACCAAAC GTACCTAGATGGTAGTGTTCGGGCTAGTGTACACATTTCGAGCAAGCCGC GTAAGCTGTGTGTGGCGGAGGGGGGGCGGGGACCCGGCACCTCGGGAAAC TCGAGAATGGTCTCGGTAAAGGGACGGGAGGAAACGGGAGACACGTCTAG ATGTCTAAGGGTGTAGAGCAAGGCATGGATCGAATCTGATGTGTGACGGA GCATGAGCGCCAATTTGTTGCTGCTGGGGCACATTCAATGGACCTTGGCG CGTCCCGGCCCTTGGCCCTTGGTATCCTGGGTTATCGAACGGAGGGTCGA CGTAGATTGGTGTGGCGAGCGTGAGTAAGCGAAACTTGCTGACAGGAAGG AAGCATTGAAGAAGGGGGTTTCATGTGTGCTATTGCCCGTTGGGTTCCCT CCCCTCCCTTTCTGCGTGATTTCAGACAAAAGTGGTTGGCTCTTGAGACT GGGAGGCAAGTGGGGAAGAGTTGATCGATTTCGTTGGTACGGGGATCATG AATGTGCGCACTCTTTAAATTGAGTGCCAGTCTGTGGGCCGCTCCACTCA AGGCGCTTGGTTGACACGGTCGGTGGAAACACCCACAGGAGTGGAGTGTA AACCAAAAACCCGAAAGGGTAGATACGGGAGCAGTCGATTCTAAGGGCGC CAGGAAGTGTCCAGGATCATATATCTCGAAAATGGTGTATGTTGTCATTA GATGGTGGCGGATACAGCAAAGGTTGCTTTT
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Coding sequence (CDS) from alignment at P-lacustris_contig1086:17528..20508-

>mRNA_P-lacustris_contig1086.716.1 ID=mRNA_P-lacustris_contig1086.716.1|Name=mRNA_P-lacustris_contig1086.716.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1662bp|location=Sequence derived from alignment at P-lacustris_contig1086:17528..20508- (Pleurocladia lacustris SAG_25_93)
ATGCCTCTCGGGTTCGTAAGCGGCGCCGGCGGCAGCAGCCCCGAGGAGCT
GTTTCGCAGCATCCCGCCTGTCTCCAAGGTGTTGATAGTGGGAATGGTCG
GCACGATGTTCTCCATCGTGATGGGGCTGTGTGCCCCGTTGGATTACTAT
CTCTCGTGGCCCCTGGTCTGGAACAAGTTCCATCTGTGGCGACTCTTCAC
TTCGGGCATCTTCCCGGGAGTGCCCAGCTACCCCTCTCTCATGACGATCT
TCTCCATAGGAATGTTCTCCATGAGATGCCTCTCGGGTTCGTAAGCGGCG
CCGGCGGCAGCAGCCCCGAGGAGCTGTTTCGCAGCATCCCGCCTGTCTCC
AAGGTGTTGATAGTGGGAATGGTCGGCACGATGTTCTCCATCGTGATGGG
GCTGTGTGCCCCGTTGGATTACTATCTCTCGTGGCCCCTGGTCTGGAACA
AGTTCCATCTGTGGCGACTCTTCACTTCGGGCATCTTCCCGGGAGTGCCC
AGCTACCCCTCTCTCATGACGATCTTCTCCATAGGAATGTTCTCCATGAG
GTATGAGAAGGACGGGTTCAGCATGGGCGGCGGGGGCGGGAGCGCGGACT
TTGCGTACATGCTCCTGTTCGGCTTCGTGTGCATCGAGGCCTCGCTGCTG
CTGCTCTTTTACCAGCCCTTCTTGATCTTCACCGAAGCCCTCATGTTCTA
CATCTGCTACGTGTGGAGCCGAAAAAATCCTGACATGTCGGTCAGCTTCT
GGGGAATAATGATCAACGCTCTCTACGTGCCATGGGTGATGGTGGCGATG
AGGTATGAGAAGGACGGGTTCAGCATGGGCGGCGGGGGCGGGAGCGCGGA
CTTTGCGTACATGCTCCTGTTCGGCTTCGTGTGCATCGAGGCCTCGCTGC
TGCTGCTCTTTTACCAGCCCTTCTTGATCTTCACCGAAGCCCTCATGTTC
TACATCTGCTACGTGTGGAGCCGAAAAAATCCTGACATGTCGGTCAGCTT
CTGGGGAATAATGATCAACGCTCTCTACGTGCCATGGGTGATGGTGGCGA
TGAGGGTGCTTCTCGGGTCGAGCGTCTTCATGTCCCTCCTCGGCATCGCC
GTGGGTCACCTCTTCTATTTCCTCGTCGACGTCCTCCCAGACCTCCACGA
CATCGACCTCCTCCAGACCCCTCAGTTCCTGGTCAACATGTTGGGTTGGG
GCCGCGAGGGATCGGGAGTGGCGATGCAGAGAGGCGGTGGGGCAGCGCCA
GGGGCTGCAGGAATGCCCGCCCCCGGAGCCGTACAACCGCCGCGGGACAT
TCCGCGAACCAGGGGCGGGGCGGGTTGGGGGACCGGGCGGACGCTCGGCT
CTTCCTGAGGTGCTTCTCGGGTCGAGCGTCTTCATGTCCCTCCTCGGCAT
CGCCGTGGGTCACCTCTTCTATTTCCTCGTCGACGTCCTCCCAGACCTCC
ACGACATCGACCTCCTCCAGACCCCTCAGTTCCTGGTCAACATGTTGGGT
TGGGGCCGCGAGGGATCGGGAGTGGCGATGCAGAGAGGCGGTGGGGCAGC
GCCAGGGGCTGCAGGAATGCCCGCCCCCGGAGCCGTACAACCGCCGCGGG
ACATTCCGCGAACCAGGGGCGGGGCGGGTTGGGGGACCGGGCGGACGCTC
GGCTCTTCCTGA
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