mRNA_P-lacustris_contig1084.708.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1084.708.1
Unique NamemRNA_P-lacustris_contig1084.708.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1084.708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1084contigP-lacustris_contig1084:46246..46751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size506
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1084.708.1prot_P-lacustris_contig1084.708.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1084 46367..46750 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.9348555-UTR-P-lacustris_contig1084:46245..463661622815359.9348555-UTR-P-lacustris_contig1084:46245..46366Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1084 46246..46366 +
1693493498.937262-UTR-P-lacustris_contig1084:46245..463661693493498.937262-UTR-P-lacustris_contig1084:46245..46366Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1084 46246..46366 +
1622815359.9600391-UTR-P-lacustris_contig1084:46750..467511622815359.9600391-UTR-P-lacustris_contig1084:46750..46751Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1084 46751..46751 +
1693493498.9526794-UTR-P-lacustris_contig1084:46750..467511693493498.9526794-UTR-P-lacustris_contig1084:46750..46751Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1084 46751..46751 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.9459386-CDS-P-lacustris_contig1084:46366..467501622815359.9459386-CDS-P-lacustris_contig1084:46366..46750Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1084 46367..46750 +
1693493498.945183-CDS-P-lacustris_contig1084:46366..467501693493498.945183-CDS-P-lacustris_contig1084:46366..46750Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1084 46367..46750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1084.708.1

>prot_P-lacustris_contig1084.708.1 ID=prot_P-lacustris_contig1084.708.1|Name=mRNA_P-lacustris_contig1084.708.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=128bp
MPPDCTLHKSARCRHGYCGIAQRYHYFHVHPDRSCFSASRPPPLSTYSIK
SFILLAFFFSPLGFLTPAYGNLLQFLITTEHPPPASARRQKRLQHQSLIN
SYIGYYSSLFTLLQASAAQSNESQSNS*
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mRNA from alignment at P-lacustris_contig1084:46246..46751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1084.708.1 ID=mRNA_P-lacustris_contig1084.708.1|Name=mRNA_P-lacustris_contig1084.708.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=506bp|location=Sequence derived from alignment at P-lacustris_contig1084:46246..46751+ (Pleurocladia lacustris SAG_25_93)
CTCACGCTTCCCACGTTCCTTCAGGCGACCTAAGCGCCTACGTTCCACAC
AACATCTACCCTCTACAAGCAAGTGAACACCTCTGTCCGGAATTCAAGTT
TATTCACTCTGCAGCGAATCGATGCCGCCTGACTGCACATTGCACAAATC
AGCGAGATGCCGCCACGGATATTGCGGCATCGCACAACGTTACCATTATT
TTCATGTGCATCCGGATAGATCGTGTTTCTCTGCTTCGCGCCCCCCTCCA
CTAAGTACTTACTCAATCAAGTCTTTCATCTTACTAGCGTTCTTTTTTTC
TCCACTCGGATTTCTCACTCCTGCCTACGGTAATCTTCTCCAATTTTTGA
TAACTACTGAACACCCTCCCCCGGCCTCGGCGAGAAGACAAAAACGCCTC
CAACATCAATCATTAATCAACAGTTATATCGGCTATTATTCAAGTTTATT
CACTCTGCTACAAGCCTCTGCAGCACAGTCCAATGAATCACAATCGAACA
GCTGAA
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Coding sequence (CDS) from alignment at P-lacustris_contig1084:46246..46751+

>mRNA_P-lacustris_contig1084.708.1 ID=mRNA_P-lacustris_contig1084.708.1|Name=mRNA_P-lacustris_contig1084.708.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=768bp|location=Sequence derived from alignment at P-lacustris_contig1084:46246..46751+ (Pleurocladia lacustris SAG_25_93)
ATGCCGCCTGACTGCACATTGCACAAATCAGCGAGATGCCGCCACGGATA
TTGCGGCATCGCACAACGTTACCATTATTTTCATGTGCATCCGGATAGAT
CGTGTTTCTCTGCTTCGCGCCCCCCTCCACTAAGTACTTACTCAATCAAG
TCTTTCATCTTACTAGCGTTCTTTTTTTCTCCACTCGGATTTCTCACTCC
TGCCTACGGTAATCTTCTCCAATTTTTGATAACTACTGAACACCCTCCCC
CGGCCTCGGCGAGAAGACAAAAACGCCTCCAACATCAATCATTAATCAAC
AGTTATATCGGCTATTATTCAAGTTTATTCACTCTGCTACAAGCCTCTGC
AGCACAGTCCAATGAATCACAATCGAACAGCTGAATGCCGCCTGACTGCA
CATTGCACAAATCAGCGAGATGCCGCCACGGATATTGCGGCATCGCACAA
CGTTACCATTATTTTCATGTGCATCCGGATAGATCGTGTTTCTCTGCTTC
GCGCCCCCCTCCACTAAGTACTTACTCAATCAAGTCTTTCATCTTACTAG
CGTTCTTTTTTTCTCCACTCGGATTTCTCACTCCTGCCTACGGTAATCTT
CTCCAATTTTTGATAACTACTGAACACCCTCCCCCGGCCTCGGCGAGAAG
ACAAAAACGCCTCCAACATCAATCATTAATCAACAGTTATATCGGCTATT
ATTCAAGTTTATTCACTCTGCTACAAGCCTCTGCAGCACAGTCCAATGAA
TCACAATCGAACAGCTGA
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