mRNA_P-lacustris_contig1083.703.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1083.703.1
Unique NamemRNA_P-lacustris_contig1083.703.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1083.703.1 vs. uniprot
Match: D7FQ20_ECTSI (Magnesium-protoporphyrin IX methyltransferase, putative chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ20_ECTSI)

HSP 1 Score: 398 bits (1022), Expect = 2.970e-131
Identity = 212/261 (81.23%), Postives = 224/261 (85.82%), Query Frame = 1 
Query:    1 MPSYAATGLAASCTLLAASLSSSLVSAFVAPAKGLPHAFP---TLDAVTKTAIVGRNAHALRSTLVDKDKEEVTEYFNNNGFERWNKIYSESDEVNNVQRDIRTGHAQTIDKVLRWVEEDGSANSVFCDTGCGVGSLSIPLARMGATLASSDISAAMTGEAAERAKAELGKDSERISFTTSDLENLSGEYDTVLCIDVMIHYPTKKMSDMVRKLCSMSKNRVILSFAPDTWYYSLLKKVGEFFPGPSKTTRAYLHTEEAVR 774
            MPS  A  L  S  +L  S   SLVSAFVAPA GLP A P      A  +T +VGR  H L STLVDKDKEEVTEYFNNNGFERWNKIYSESDEVN+VQRDIRTGH QTIDKVLRWVEEDGSA SVFCD GCGVGSLSIPLAR+GA +ASSDISAAMTGEA ERAKAELG+D++RISFTTSDLENL+G YDTVLCIDVMIHYPT+KMSDMV KLCSMSKNRVILSFAPDTWYYSLLKK+GE FPGPSKTTRAYLHTEEAVR
Sbjct:    1 MPSSLAKALVTSGAVLVTS-PCSLVSAFVAPAGGLPRAGPGSSAAAAAARTPVVGRTPHVLMSTLVDKDKEEVTEYFNNNGFERWNKIYSESDEVNDVQRDIRTGHGQTIDKVLRWVEEDGSAKSVFCDAGCGVGSLSIPLARLGAKVASSDISAAMTGEAEERAKAELGRDAKRISFTTSDLENLTGSYDTVLCIDVMIHYPTEKMSDMVSKLCSMSKNRVILSFAPDTWYYSLLKKIGELFPGPSKTTRAYLHTEEAVR 260
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BLAST of mRNA_P-lacustris_contig1083.703.1 vs. uniprot
Match: A0A836C7Y3_9STRA (Magnesium-protoporphyrin IX methyltransferase, putative chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Y3_9STRA)

HSP 1 Score: 296 bits (759), Expect = 3.330e-92
Identity = 154/232 (66.38%), Postives = 179/232 (77.16%), Query Frame = 1 
Query:   79 AFVAPAKGLPHAFPTLDAVTKTAIVGRNAHALRSTLVDKDKEEVTEYFNNNGFERWNKIYSESDEVNNVQRDIRTGHAQTIDKVLRWVEEDG-SANSVFCDTGCGVGSLSIPLARMGATLASSDISAAMTGEAAERAKAELGKDSERISFTTSDLENLSGEYDTVLCIDVMIHYPTKKMSDMVRKLCSMSKNRVILSFAPDTWYYSLLKKVGEFFPGPSKTTRAYLHTEEAV 771
            AF+AP+  L        AV   A+   +A  + + +VDKDKEEVTEYFNNNGFERWNKIYS+SDEVN VQ+DIR GH QT+DKVL W++ DG +A   FCD GCGVGSL+IPL   GA +A+SDIS AMT EAA R K  LG D++RI+F TSDLE+LSG YDTV CIDVMIHYPT KM++MV KLCSM+ NRVI+SFAPDTWYY+ LK  G  FPGPSKTTRAYLH EEAV
Sbjct:   16 AFLAPSAQLN------TAVRSVAVSRSSALHMSTPVVDKDKEEVTEYFNNNGFERWNKIYSDSDEVNAVQKDIRDGHGQTVDKVLAWIDADGDAAKRTFCDAGCGVGSLTIPLGMRGAKVAASDISKAMTTEAAARTKVALGSDAKRITFQTSDLESLSGSYDTVCCIDVMIHYPTDKMTEMVSKLCSMATNRVIISFAPDTWYYTALKAFGGLFPGPSKTTRAYLHKEEAV 241
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BLAST of mRNA_P-lacustris_contig1083.703.1 vs. uniprot
Match: A0A7S3UWH7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWH7_HETAK)

HSP 1 Score: 266 bits (681), Expect = 1.160e-80
Identity = 136/220 (61.82%), Postives = 169/220 (76.82%), Query Frame = 1 
Query:  121 TLDAVTKTAIVGRNAHALRSTLVDKDKEEVTEYFNNNGFERWNKIYSESDEVNNVQRDIRTGHAQTIDKVLRWVEEDGSANS-VFCDTGCGVGSLSIPLARMGAT-LASSDISAAMTGEAAERAKAELGKDSERISFTTSDLENLSGEYDTVLCIDVMIHYPTKKMSDMVRKLCSMSKNRVILSFAPDTWYYSLLKKVGEFFPGPSKTTRAYLHTEEAVR 774
            +L    + ++  R   +L++ +   DKEEV EYFN NGFERWNKIYS+SDEVN VQ DIRTGH QTIDKVL W+ +DG A+   FCD GCG G+L+IPL   GA  + +SDIS++M  EAA RAKA+LG  ++++SF+ +DLE++SG+YDTV CIDVMIHYPT KM  +V  L S+S +++ILSFAPDTWYYSLLKKVGE FPGPSKTTRAYLH E  VR
Sbjct:   23 SLPVQARASVSRRGVASLKAVVGVDDKEEVREYFNTNGFERWNKIYSDSDEVNKVQLDIRTGHQQTIDKVLNWISQDGDASKRTFCDCGCGTGALAIPLVEQGAKKVDASDISSSMADEAARRAKAQLGPLAKKVSFSAADLESVSGKYDTVTCIDVMIHYPTPKMYKIVNHLGSLSTDKLILSFAPDTWYYSLLKKVGELFPGPSKTTRAYLHPEADVR 242
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BLAST of mRNA_P-lacustris_contig1083.703.1 vs. uniprot
Match: A0A7S4JSX4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JSX4_9STRA)

HSP 1 Score: 267 bits (683), Expect = 1.280e-80
Identity = 137/194 (70.62%), Postives = 155/194 (79.90%), Query Frame = 1 
Query:  196 DKEEVTEYFNNNGFERWNKIYSESDEVNNVQRDIRTGHAQTIDKVLRWVEEDGSANSV-FCDTGCGVGSLSIPLARMGATLASSDISAAMTGEAAERAKAELGKDSERISFTTSDLENLSGEYDTVLCIDVMIHYPTKKMSDMVRKLCSMSKNRVILSFAPDTWYYSLLKKVGEFFPGPSKTTRAYLHTEEAVR 774
            DK EV EYFNN GF RWNKIYSESDEVNNVQ DIR GH QTI K+L W+E+DG       CD GCGVGSL+IPLA+MGA +++SDISAAM  EAAERAK+ +G    R  F TSDLE++SG+YDTV C+DV IHYPT KMS+MV  LCS+SK RV++SFAP TWYYS LKKVGE FPGPSKTTRAYLH EE VR
Sbjct:   76 DKTEVREYFNNEGFNRWNKIYSESDEVNNVQLDIRNGHDQTIQKILNWIEDDGDIRGQSVCDCGCGVGSLAIPLAQMGAKVSASDISAAMASEAAERAKS-MGV---RAKFYTSDLESVSGKYDTVTCVDVAIHYPTDKMSEMVTHLCSLSKERVLISFAPKTWYYSALKKVGELFPGPSKTTRAYLHEEEVVR 265
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BLAST of mRNA_P-lacustris_contig1083.703.1 vs. uniprot
Match: A0A7S2V2R3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2R3_9STRA)

HSP 1 Score: 265 bits (678), Expect = 4.150e-80
Identity = 145/230 (63.04%), Postives = 169/230 (73.48%), Query Frame = 1 
Query:  118 PTLDAVTKTAIVGRNAHALRSTL-------VDKDKEEVTEYFNNNGFERWNKIYSESDEVNNVQRDIRTGHAQTIDKVLRWVEEDGSANSV----FCDTGCGVGSLSIPLARMGATLASSDISAAMTGEAAERAKAELGKDSERISFTTSDLENLSGEYDTVLCIDVMIHYPTKKMSDMVRKLCSMSKNRVILSFAPDTWYYSLLKKVGEFFPGPSKTTRAYLHTEEAVR 774
            PTL  +++  IV R+   +RS         VD DKEEV EYFN NGFERWN IYS+SD VN VQ DIR GH QT+DKVL W++ DG   +V    F D GCGVG L++PLA  GA + +SDISAAMT EAA RAK  LG+ +    F T+DLE+L G YD VLCIDVMIHYPT KM DMV+ L S++K+RVI+SFAP+TWYYSLLKKVGE FPGPSKTTRAYLH EEAVR
Sbjct:   24 PTL--ISQNKIVARSHSGVRSLKAAVSPPKVD-DKEEVREYFNTNGFERWNAIYSDSDSVNKVQLDIRVGHQQTVDKVLGWLDADGVDKTVKGKSFVDAGCGVGLLTLPLASRGAKVFASDISAAMTKEAAARAKEALGRQANNCKFETADLESLKGSYDNVLCIDVMIHYPTDKMYDMVQHLASLAKDRVIVSFAPNTWYYSLLKKVGELFPGPSKTTRAYLHKEEAVR 250
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BLAST of mRNA_P-lacustris_contig1083.703.1 vs. uniprot
Match: A0A7S1TQT4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQT4_9STRA)

HSP 1 Score: 262 bits (669), Expect = 3.290e-79
Identity = 137/216 (63.43%), Postives = 165/216 (76.39%), Query Frame = 1 
Query:  130 AVTKTAIVGRNAHALRSTLVDKDKEEVTEYFNNNGFERWNKIYSESDEVNNVQRDIRTGHAQTIDKVLRWVEEDG-SANSVFCDTGCGVGSLSIPLARMGATLASSDISAAMTGEAAERAKAELGKDSERIS-FTTSDLENLSGEYDTVLCIDVMIHYPTKKMSDMVRKLCSMSKNRVILSFAPDTWYYSLLKKVGEFFPGPSKTTRAYLHTEEAV 771
            A+ ++ +   +A A+     DKD  EV EYFN  GFERWNKIYSESDEVNNVQ DIRTGH QTI KVL+WV+ DG +A   FCD GCGVGSL+IPLA  GA +++SDISAAM  EAA RAK  L  +  R++ F+TS+LE++ G+YDTV CIDVMIHYP+ +M DMV  L S +  R+I+SFAP+TW+YS LKKVGEFFPGPSKTTRAYLH EE V
Sbjct:    4 ALARSPVARTSALAVAQRSGDKDLVEVEEYFNTAGFERWNKIYSESDEVNNVQLDIRTGHDQTIAKVLKWVDADGDAAKRTFCDAGCGVGSLAIPLASRGANVSASDISAAMAKEAASRAKMVLPANQARLARFSTSNLEDIKGKYDTVTCIDVMIHYPSDRMQDMVTSLASKANKRLIISFAPNTWFYSALKKVGEFFPGPSKTTRAYLHKEEDV 219
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BLAST of mRNA_P-lacustris_contig1083.703.1 vs. uniprot
Match: A0A7R9ZHH6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHH6_9STRA)

HSP 1 Score: 261 bits (667), Expect = 1.290e-78
Identity = 145/231 (62.77%), Postives = 170/231 (73.59%), Query Frame = 1 
Query:   88 APAKGLPHAFPTLDAVTKTAIVGRNAHALRSTLVDKDKEEVTEYFNNNGFERWNKIYSESDEVNNVQRDIRTGHAQTIDKVLRWVEEDG--SANSVFCDTGCGVGSLSIPLARMGATLASSDISAAMTGEAAERAKAELGKDSERISFTTSDLENLSGEYDTVLCIDVMIHYPTKKMSDMVRKLCSMSKNRVILSFAPDTWYYSLLKKVGEFFPGPSKTTRAYLHTEEAVR 774
            AP  G   AF  + A T T      A  L       DK EV EYFNN GF RWNKIYSESDEVNNVQ DIR GH QTI K+L W+E+DG  S  SV CD GCGVGSL+IPLA+MGA +++SDIS AM  EAAERAK+ +G  + +  F TSDLE+++G+YDTV C+DV IHYPT+KMS+MV  LCS++ +RV++SFAP TWYYS LKKVGE FPGPSKTTRAYLH EE VR
Sbjct:   16 APPSGFAAAF--VPANTFTPRSASPASVLGMATEIDDKTEVREYFNNEGFNRWNKIYSESDEVNNVQLDIRNGHDQTIQKILGWIEDDGDISGKSV-CDCGCGVGSLAIPLAQMGAKISASDISDAMASEAAERAKS-MGISNAK--FYTSDLESVTGKYDTVTCVDVAIHYPTEKMSEMVGHLCSLANDRVLISFAPKTWYYSALKKVGELFPGPSKTTRAYLHEEEVVR 240
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BLAST of mRNA_P-lacustris_contig1083.703.1 vs. uniprot
Match: R1BRI2_EMIHU (Protoporphyrin IX methyltransferase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BRI2_EMIHU)

HSP 1 Score: 260 bits (664), Expect = 2.570e-78
Identity = 140/225 (62.22%), Postives = 165/225 (73.33%), Query Frame = 1 
Query:  106 PHAFPTLDAVTKTAIVGRNAHALRSTLVDKDKEEVTEYFNNNGFERWNKIYSESDEVNNVQRDIRTGHAQTIDKVLRWVEEDGS---ANSVFCDTGCGVGSLSIPLARMGATLASSDISAAMTGEAAERAKAELGKDSERISFTTSDLENLSGEYDTVLCIDVMIHYPTKKMSDMVRKLCSMSKNRVILSFAPDTWYYSLLKKVGEFFPGPSKTTRAYLHTEEAV 771
            PHA P   A ++ A          S +   DK EV EYFNN GF RWN+IYSE  EVN VQ DIRTGH QT+DK+L+WV+ DG    ++  +CD GCGVGSL+IPLA+ GAT+ +SDI+ AM  EA ER  A+LG  SER SF+TSDLE+LSGEYDTV CIDVMIHYP +KM+ MV  L  ++K R+ILSFAPDTWYY  LK+ GE FPGPSKTTRAYLHTEEAV
Sbjct:   18 PHAPPRCLAASRAA----------SPVCVDDKSEVEEYFNNEGFNRWNRIYSEDGEVNAVQLDIRTGHGQTVDKILKWVDSDGRESLSDGTWCDAGCGVGSLAIPLAQRGATVVASDIAGAMASEA-ERRAADLGL-SERASFSTSDLESLSGEYDTVSCIDVMIHYPPEKMAGMVGHLGGIAKERLILSFAPDTWYYRALKRFGELFPGPSKTTRAYLHTEEAV 230
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BLAST of mRNA_P-lacustris_contig1083.703.1 vs. uniprot
Match: A0A7S1D5P7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5P7_CYCTE)

HSP 1 Score: 258 bits (660), Expect = 8.760e-78
Identity = 134/202 (66.34%), Postives = 161/202 (79.70%), Query Frame = 1 
Query:  172 LRSTLVDKDKEEVTEYFNNNGFERWNKIYSESDEVNNVQRDIRTGHAQTIDKVLRWVEEDGSANSV-FCDTGCGVGSLSIPLARMGATLASSDISAAMTGEAAERAKAELGKDSERISFTTSDLENLSGEYDTVLCIDVMIHYPTKKMSDMVRKLCSMSKNRVILSFAPDTWYYSLLKKVGEFFPGPSKTTRAYLHTEEAVR 774
            LR T+   DK EV EYFN  GF RWNKIYSESD+VN+VQ DIRTGH QTIDK+L+W++ DG  +    CD GCGVGSL+IPLA+MGA +++SDIS +M  EAA RAK ELG   E   F TSDLE+++G+YDTV C+DV IHYPT KMS+M+  LCS++++RV++SFAP TWYY LLKKVGE FPGPSKTTRAYLH EEAVR
Sbjct:   31 LRETV--DDKTEVREYFNTEGFNRWNKIYSESDDVNSVQLDIRTGHDQTIDKILKWIKADGDIDGKSVCDCGCGVGSLAIPLAQMGAKISASDISDSMATEAARRAK-ELGI--ENAEFYTSDLESVTGKYDTVTCVDVAIHYPTDKMSEMIGHLCSLAEDRVVISFAPKTWYYVLLKKVGELFPGPSKTTRAYLHEEEAVR 227
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BLAST of mRNA_P-lacustris_contig1083.703.1 vs. uniprot
Match: A0A448Z6N4_9STRA (Mg-por_mtran_C domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448Z6N4_9STRA)

HSP 1 Score: 258 bits (659), Expect = 1.270e-77
Identity = 137/204 (67.16%), Postives = 165/204 (80.88%), Query Frame = 1 
Query:  169 ALRSTLVDKDKEEVTEYFNNNGFERWNKIYSESDEVNNVQRDIRTGHAQTIDKVLRWVEEDG--SANSVFCDTGCGVGSLSIPLARMGATLASSDISAAMTGEAAERAKAELGKDSERISFTTSDLENLSGEYDTVLCIDVMIHYPTKKMSDMVRKLCSMSKNRVILSFAPDTWYYSLLKKVGEFFPGPSKTTRAYLHTEEAVR 774
            +L +T VD DK EV EYFN  GF RWNKIYS+SDEVN+VQ DIRTGH QTI K+L WV++DG  S  SV CD GCGVGSL+IPLA+MGA +++SDIS +M  EAA RAK E+G +++   F TSDLE++SG+YDTV C+DV IHYPT KM++MV  LCS++++RVI+SFAP TWYYS LKKVGE FPGPSKTTRAYLH EE VR
Sbjct:   31 SLAATGVD-DKTEVREYFNTEGFNRWNKIYSDSDEVNSVQLDIRTGHDQTIQKILNWVQDDGDISGKSV-CDCGCGVGSLAIPLAQMGAKISASDISDSMANEAARRAK-EMGLEAK---FYTSDLESVSGKYDTVTCVDVAIHYPTDKMAEMVGHLCSLAEDRVIISFAPKTWYYSFLKKVGELFPGPSKTTRAYLHEEEVVR 228
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1083.703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ20_ECTSI2.970e-13181.23Magnesium-protoporphyrin IX methyltransferase, put... [more]
A0A836C7Y3_9STRA3.330e-9266.38Magnesium-protoporphyrin IX methyltransferase, put... [more]
A0A7S3UWH7_HETAK1.160e-8061.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4JSX4_9STRA1.280e-8070.62Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2V2R3_9STRA4.150e-8063.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1TQT4_9STRA3.290e-7963.43Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9ZHH6_9STRA1.290e-7862.77Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
R1BRI2_EMIHU2.570e-7862.22Protoporphyrin IX methyltransferase n=2 Tax=Emilia... [more]
A0A7S1D5P7_CYCTE8.760e-7866.34Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A448Z6N4_9STRA1.270e-7767.16Mg-por_mtran_C domain-containing protein n=2 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1083contigP-lacustris_contig1083:23594..30523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score402.1
Seed ortholog evalue2e-109
Seed eggNOG ortholog2880.D7FQ20
Preferred nameCHLM
KEGG rclassRC00003,RC00460
KEGG koko:K03428
KEGG ReactionR04237
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008757,GO:0009058,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032259,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046406,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.hexaprenyldihydroxybenzoate methyltransferase activity
EggNOG OGsCOG2227@1,KOG1270@2759
EC2.1.1.11
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons7
Model size2081
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1083.703.1prot_P-lacustris_contig1083.703.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1083 24856..30523 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.2724214-UTR-P-lacustris_contig1083:23593..248551622815359.2724214-UTR-P-lacustris_contig1083:23593..24855Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1083 23594..24855 -
1693493498.5450761-UTR-P-lacustris_contig1083:23593..248551693493498.5450761-UTR-P-lacustris_contig1083:23593..24855Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1083 23594..24855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.3184457-CDS-P-lacustris_contig1083:24855..249691622815359.3184457-CDS-P-lacustris_contig1083:24855..24969Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 24856..24969 -
1693493498.5589874-CDS-P-lacustris_contig1083:24855..249691693493498.5589874-CDS-P-lacustris_contig1083:24855..24969Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 24856..24969 -
1622815359.3337698-CDS-P-lacustris_contig1083:27360..274561622815359.3337698-CDS-P-lacustris_contig1083:27360..27456Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 27361..27456 -
1693493498.5701597-CDS-P-lacustris_contig1083:27360..274561693493498.5701597-CDS-P-lacustris_contig1083:27360..27456Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 27361..27456 -
1622815359.3439195-CDS-P-lacustris_contig1083:27727..278471622815359.3439195-CDS-P-lacustris_contig1083:27727..27847Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 27728..27847 -
1693493498.5794425-CDS-P-lacustris_contig1083:27727..278471693493498.5794425-CDS-P-lacustris_contig1083:27727..27847Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 27728..27847 -
1622815359.3558686-CDS-P-lacustris_contig1083:28294..283921622815359.3558686-CDS-P-lacustris_contig1083:28294..28392Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 28295..28392 -
1693493498.5880284-CDS-P-lacustris_contig1083:28294..283921693493498.5880284-CDS-P-lacustris_contig1083:28294..28392Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 28295..28392 -
1622815359.3667493-CDS-P-lacustris_contig1083:28605..286691622815359.3667493-CDS-P-lacustris_contig1083:28605..28669Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 28606..28669 -
1693493498.6003678-CDS-P-lacustris_contig1083:28605..286691693493498.6003678-CDS-P-lacustris_contig1083:28605..28669Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 28606..28669 -
1622815359.3764307-CDS-P-lacustris_contig1083:29053..292011622815359.3764307-CDS-P-lacustris_contig1083:29053..29201Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 29054..29201 -
1693493498.609624-CDS-P-lacustris_contig1083:29053..292011693493498.609624-CDS-P-lacustris_contig1083:29053..29201Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 29054..29201 -
1622815359.3881104-CDS-P-lacustris_contig1083:30344..305231622815359.3881104-CDS-P-lacustris_contig1083:30344..30523Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 30345..30523 -
1693493498.6187758-CDS-P-lacustris_contig1083:30344..305231693493498.6187758-CDS-P-lacustris_contig1083:30344..30523Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 30345..30523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1083.703.1

>prot_P-lacustris_contig1083.703.1 ID=prot_P-lacustris_contig1083.703.1|Name=mRNA_P-lacustris_contig1083.703.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=273bp
MPSYAATGLAASCTLLAASLSSSLVSAFVAPAKGLPHAFPTLDAVTKTAI
VGRNAHALRSTLVDKDKEEVTEYFNNNGFERWNKIYSESDEVNNVQRDIR
TGHAQTIDKVLRWVEEDGSANSVFCDTGCGVGSLSIPLARMGATLASSDI
SAAMTGEAAERAKAELGKDSERISFTTSDLENLSGEYDTVLCIDVMIHYP
TKKMSDMVRKLCSMSKNRVILSFAPDTWYYSLLKKVGEFFPGPSKTTRAY
LHTEEAVRGPWPRKALRSREQR*
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mRNA from alignment at P-lacustris_contig1083:23594..30523-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1083.703.1 ID=mRNA_P-lacustris_contig1083.703.1|Name=mRNA_P-lacustris_contig1083.703.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6930bp|location=Sequence derived from alignment at P-lacustris_contig1083:23594..30523- (Pleurocladia lacustris SAG_25_93)
ATGCCTTCCTATGCGGCGACAGGATTGGCTGCGTCCTGTACGTTGCTGGC
GGCCTCCTTATCTAGCTCTCTAGTGTCTGCTTTTGTTGCTCCTGCCAAAG
GCCTCCCACATGCATTTCCCACATTGGATGCGGTCACCAAGACGGCGATC
GTGGGGAGGAACGCGCATGCGCTCAGGAGGTGAGTAGAGGACCGAGAGGT
CAGGATAGGAGGTGTAGAGGTGGTCGGAAATTATGAGAGTGGACGGAATA
CGCTGGCCTACAAACTCGTCGACCTGTTGGTGTGCATGTTGAAATGACAT
ACTCCGGAGTACACAATTCAAGCGGCTTGCATGATAATGCTTCCTCCTCC
TGCAATCGACGGGGAGAGGATTGCTTCAAACGTGCGATCAGAAATGTGTG
TAGCTTGTTGTGGTGCTTTACTATACGGCTTGGTTGATCGCCTTGCTGCT
GTTTCGTATATGTTGATTCCGTCAACGACCGTCAGGTTAAAGACAACGCC
GTGTGTGTCTGGGACTTTCTTTATCTCCGACCTTTGCACAGGTTTGATGT
TGTACAACAGCAGTGCATGATATCTGTCATAATATCAGAGTAATTTCGTA
ATTCCCATGTTATGAGGAGTGGATGGCCTCCTAAAGTTGCGCACACGCGG
TTGAGTTGAGGTATCGATACACCTATACGACACACCTATAGGACTAGCGT
ATTTCATTGAGGTCGTACCTTGCGTGACTTTCTTTCTGTGTAGCCTCGGC
CAAGTGTTGATGTCATATCTTTCGCCTCACAGCAGTGCAGCAGCGCTGCG
ATGTGAAGTTCAAATATCTGCGTGGCGAACATTCGCAATGGCCTACTCTG
CTGTACAGTATACGACTTTTATGTGTGGTTCTCGTACCTGAGGCTGAACA
CTCTTCTGTTTCTTGTGAGAGTCTTTCTCGACAGGCGCCGCTGCATGCCG
CCGAAACAACACTAGAGCAGTATCCCGTGATGCCATGTCTGTGCATCTTG
GCTGCGTACTGCTGTGTGGCCTTGTCTGGCGCCGATCCGTGTTGTATTTT
TATTTTTGTGCGCAGGTTTGCGAGACTCCTCGCTTGAAGCCCCTACATTT
TTCCGTCGGTTGAATTGCTCATCTGGAAGATCTAGATCGGACGAAAATAG
CTGGCGTTCTGCTTCTTGTTTGTACAAGCTGTTCCTTTTGGTGGTCAGAG
GTGTTGTCTACCGCTCCTCCTATCCTTTGGCTCCTATTTCTTCTGTATAT
GCACAAAAACAAAAACATTTTTTTTTTTTCATGTCATCTCTAATGTCAAA
ACAAATACCTACGGCAAAGCAGCACCTTAGTAGACAAGGACAAAGAGGAG
GTGACGGAGTACTTCAACAACAACGGCTTCGAACGGTGGAACAAGATCTA
CTCCGAGTCGGACGAGGTTAACAACGTCCAGAGAGATATCCGCACCGGCC
ACGCCCAGACCATCGACAAGGTATGCATACGACTGTTTCACCCGGACTTT
GACACCACACCACCCGGATGCTGTTAGCTCTCGAGGCATCACGATTACCT
TTTTAATCTCACTCGTGGAAAGTGAAGCCCTTGCATCAATAACATTACAC
ACAACATAAGGGATTTGTAAGGCTTTTCTCACGTGCGTTTCGTCAAATCG
CGCAGCTGAGAGATGACGCAGTGGGCGAACCGGAGCGACCAAGGGTTTCT
TTCATTGGATTTGTGCGAAAGCAAGGCTCGGAGTTGGTTACAATCGAGCT
TTCCGCCGGCCACTCCCGTACGTGGTCCTCTGTTTCATGCCCACACCCTC
CGTGTGCACGTCTCCTTAACGCACCCCCTTGTGCTTTCGGATGTGTGATG
CCAGGTCTTGAGGTGGGTGGAAGAAGACGGGAGCGCCAACAGCGTCTTCT
GCGACACAGGCTGCGGAGGTGAGCGGGTGGCCGCAGCCTCCGTCGCTCTT
GTACGAAAACATTGTTCGAACGCACAAGCAATCGTATGAAAGAAGGACCG
ATCACCTAAGCAGGAGGTTCTGTGCAACCATCGGACTCGAAACACAAGGC
CGGGCCCTCTTTTTCCGCATAAGTTGGTTGAGGCCCGAAAGCACCGTAAC
CGAGCCCTCCCCACCTCCCCTGCGCTTGCAGTCGGCTCGCTGTCGATCCC
GCTGGCAAGAATGGGAGCCACACTTGCTTCGTCCGACATCTCGGCCGCGA
TGACTGGGGAGGCCGCGGAAAGGGCGAAGGTGCGGAAGCATGCATAAGAT
TCCCTTTTGCGGCGGGCTGCGCTACTTTATCTTGTCGTGGCGGCATGGCA
TTACCGGAGACGCCGTTGTTTGCTTTCGATGTTTGTAACAGCTTTTGACC
GCAGTTCGCCATGCGGGGGGTGGGGGCAGGGGTTATCACTCTCAGGGCAT
TGTTTACAGGTGTGTCCAATTGACTTAATCGGAGAGTATCATTCGAATAT
TTGTGTTTGACTAACCTTGGTGTCGATGGCGGATGATTATATGTATTTTG
GCAGTGCAACTTTTTTCAACACACTCCCAAAATTTTACCCCTGTTCATTT
CACCTGTGTGCTTGTATTTTCAAGCATTTGCTTACCATCAAAGGCTGCTG
ACGTGTGGTACTTTGGTATGTATAGTACAGCGCACCTTCGCGGCGATAAG
CGTCTGCCGAAACTCGCTCATTTCAGGCCGAGCTAGGTAAGGACTCGGAG
CGGATAAGCTTCACCACCTCGGACCTGGAGAATCTTTCGGGCGAATACGA
CACCGTTCTCTGCATTGACGTAATGATCCATTACCCCACTAAAAAGGTAA
GCCAGCAGGCAGAAACCACGTTTTTGTTTCTCAGCGTCTTGTTGTTTTTT
GCACGACCAGACTGGCGAAGTCTGTCTCGGGCAGAGCGAGAATTAAATTT
CTGCTTTACCTCCATGCCGTTTCTGTGCACCCCTCGAGCTTTCCCTCTAG
TTTTGGCATAGTTTTCCCGCGTGTGCCTCTTTCGCCAACGAGACCCCCCG
GCGTCGTTTCGTCGTGACTCGACCTATCCCCACTACAATGCAACAACTTC
CCTCCCGCTTCCGCCAGATGTCGGACATGGTGAGGAAGCTGTGCAGTATG
TCGAAGAACCGGGTGATCCTGTCCTTCGCACCGGACACTTGGTACTACTC
TCTTCTCAAGAAGGTCGGTCAGTGTTTGATACCGACGAAGATCCCAACCC
TCTGTTCTGTCACTTGATAGCGGAAGTAGTTTAAAGTTGCCCACATTTTT
GTAGTCCAATCGCCATGGGGTGAACCGTCGTCGGAGAACAGCTGACCCCG
AAATCGAAAGCCAAAATTTGGAATTGTTGCTCGTTGATGTTCATCGTCTG
CCAGAAGATTGGGTAGGGCTGCAGAGGAAGTAGACAACAAAAAAAATGCC
AAACCAACCAATAAAGATCGCTTGGTTGATGAGGCCAGGATATCGGTATC
CCCTAGTTTTAGTTATGCACAGACAACCAGTAGAAATCGGCAGACAGGTC
AGCTATCTGGCCCGACAGTCAGCAGATTTCATACAAACGTGGTCCGCCGA
AAACTGCGAAAACTGGATGTAACCATTAACCATCGATACGGCCACACGAG
CACACGGAGGCCCTCCGGCTACTACTCGAACTTCCAACCTAGTATAGCTT
GTCCGAGCACGCTCGACTAGGCCACTCTGGGCATTCCTTGCCACATCGCT
CTAACGACACCTTGCCTGCTGGTGGACGGTTATGTTGGAATATTCTCAAC
ACTACTATGCTGCATTACTGTGCAACTTATATAGGCCATTGATGAACCAG
ATCGACACCATCCTCCAGGTTGATAACCAACACATTAAGGCCTCAACTAC
TGCAATATACCTACGGCGATATTCTGAGGAGAATCGAAGTGCTCTCCCTT
GTGCTCATGAAGAGCTTGACATGTCAATCGTCGGACAATGCCGTACCTCA
AAAAGCAAAACAAACATACTCGCCCCCTTGAACACGAAAATGTTCAAGAT
TGGCATACGACAGAGCAATGCAATATTTCACTCGTTATTGCTATACTTGT
TGAGGATACCACGATCCCTGGCTGATCCTGCCAATTTTGTTCCTCGTGGT
TCGTAACCGAAAGTATTTCCTCCTTATAATCATTCAACTAGGTGAACAAT
CAACTGGGTTCAACGTCCTCCTGAAACAAAGCTGGAGCTCATAGAACATG
CCAGAGAACTCAAATCATAATGGTGCCTACACAGGGCATGAAAGCATTGT
TTTTCGACAACGCATGAAACCTTGTTTTTCGCGTTGTTGTCATTGCTCGT
TCTGCAGTTAGCCGTTTTTCTTGTAGTTGGAGTACCCGGTGCGAAGAAGC
TGCCGAAGAAGTCGTTTGATGACCACGGCGAGTTCCGATATAGCCCAGAA
GAAAAAGTTCGGACCTACCTGTGACTTGTCTCTTTCCCTCTGAACGACGT
GTACCCTACACCTACAAGCGATGTAGGGGCGGAGGCTGAATAGCACCACA
TTGCACGTCGACGTATTTTTTGGTCGGACCGTTGAAATTTGTGCAGGCGG
CTCAACTTTCAACTTTTAGAGCGGCCACACCCTGAGGTCGATCCCGAAAT
TCGGCGGGAAAGACTGCAAGGAATTGCGGGAGAGTGTAGTCAGTGTCAGT
AATAGTATGGGTGATACCGTAATTGTGTTCCGTTGATCGTATCCATAATC
GGACAAATGCACCGTCCTCTGAATATCAGTAGAATCTTAGGTATGGTCTA
TCGACTGATAGGAAATTTAGTATGATTGCTAAAGGTCGGGATATCCGCCT
TTTGCCGGGATCGGTAAAGTGCAGTTCAGTGCAGTAGCCCGTGTGTGCTT
CTTCCCGAAATGAGGATGGTCGGCTCGCCCCCGTGGTGCTCGTCCCAACT
CTCTCACTCTCGATTCAATTCCCCTATCTTGGCCACATGAGCGCCACTTT
GAAACTACTGTATTATTTTTCCCGGTCTTCACAAGTGTACTTGACAGAGT
GACATCTCTGCACACTATCGACGGACAGGGACCACAACAAATTTAATCCA
ATGGGTTAGCCACTTCGCCACGGGTAGTTAGGGGCAATCCTTTTTTATCG
GCGAAATCGAAGACCGCTGCAGCCGAGCAAAAAAGGCCCGAGACAGGAAC
GACCCTCGTAAACCCAACACGGGGAAAGCGAGCAATCTGGATTGCCCTCA
ACTACCCGTGACGAAATTTTGTTCGTCCACCAGCGGAGGCAAGGTGCCTT
TAGTTCGATGCAGCGAAGAATGCAAACCGCAACCGAGTGTTCTCGGTCAA
GCTACTGTAGGCTGGATAGTTTGAGTAGGAGTACGTACGGGCGAGAGAGA
GCGTTTGCGGACTCCTATCCCCGTATCCGTGGTACAATAGGGGTTACACC
CGAATGTCCGGAGTATTCGGCGGACCAGTGTGCGTTCAGTTTCTTTTCCA
AATCTGTATGTCTACTACGTCTGCCCCCGCTGCCTCTCTCTTGTTTCTAT
TCACGCTTGCATCTCTCTCTCACACACACCCTTACCCTGTCACCCTTCAT
TCAGGTCGGCGAGTTCTTCCCCGGTCCCTCAAAGACCACAAGAGCTTACC
TGCACACCGAGGAAGCGGTTAGGGGGCCTTGGCCGCGGAAGGCTTTAAGG
TCAAGAGAACAGAGATGACCTCCACCAACTTTTACTACTCCCGAATGCTG
GAGGCCGTACGGGAGTAAAGAGGCTGACGAAGCCGCCGTTTTTTGCAATA
GGACGGCACAGATAGGCGCCATGTAAAAGGTGTATAGGTTGAAGTAGAGT
TTGGCGCGATCAAGAGGCGCGTGTAAAACAGCCCTCCACCCATACTGAAC
CTCAAAGAAGCAAAGGACCTTGAGTTAGCAGTAAACGAGATGATAGAGAC
TGATTTAGACAGAAAGGTGCGCCTGGGGTGATGAAAAACCCACCGCCGCG
TTTGGCGCTGGCTCTTGTACTATTTTTTGGGTACGTCGTGGTACCGGAGG
AGAGGCAGGGAAGATTTAGAACGGATTCATGGCAGAAATTTCCTTGTTTT
CGATAACAAGCATATTTGTGTGTTTGTTAGTCAAGTGCCACGTTTTCTCG
AGAAAGCATGCGGGCGACGGCGGTGGTCACCAGTGCAATGTAAGGGCGAC
CTTACGAGTGGCCCTTCCATGCAGCTCTGGTTGCTCATCAGCCGTTGCAT
CTCGTATTTAGCCGCGCAATCCAAACACCTACATCTTTTTGGCGAGTTCC
ATCTGCCGGAGCTGGTGCGTGCGTGGGGGGTTGGGGGGGTCTATTTCTAT
CACGATGTTTCAGTCATGGCACATGTTTCCCCCCACGTTTTCCCAAGTTC
GCCCATGGAGCGATCACGCATCACCAGCTCTCCAGAGATTTGCGTGCCTG
TTGATTTGACCTTTCGATCACTGTGAGCGGGTCCAAGCCAGGACAAAGTT
GCAATTCTGTGTAGGGCGTGAGGGAATGCCAAGGAAGCGTGGGCGTCGCA
CGGAGTGCACCGGATGGCCACCGGACAACGCACAGAGTGCGCCCCACGGT
GTCCTAAAACAAGCAGTTGGGTCGAACGAATAGCACCGCGTTCTTTACAG
CCCCCCCCGGACTATTATTCATTACAGTCGTTGGGGTGACCCGCTCACTT
TGAATGCCCATCTCGCATCCGCACCTTCAAAGCAAGGGCATCGCCCGGCG
AAGAATAGCTTTGCAAGAAGAAGTTGTGGCATTCGATGGTGAAAAATGTC
CATGATTCTGCATCACGAAGGGTGAGCAACTGCAGGTGGTGTGTTTCCTC
CCAATATTAATCACAGAAACGAAACTGCGGCCTGAGGGCGCTTTTCTGCC
TCGGAAAAATGGAGAGCGTGTTCCCCCGCCAGAGCTGCAGTCCAAACGGG
ACGCAATGTTCTCCACAAATCCGAGTCCAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1083:23594..30523-

>mRNA_P-lacustris_contig1083.703.1 ID=mRNA_P-lacustris_contig1083.703.1|Name=mRNA_P-lacustris_contig1083.703.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1638bp|location=Sequence derived from alignment at P-lacustris_contig1083:23594..30523- (Pleurocladia lacustris SAG_25_93)
ATGCCTTCCTATGCGGCGACAGGATTGGCTGCGTCCTGTACGTTGCTGGC
GGCCTCCTTATCTAGCTCTCTAGTGTCTGCTTTTGTTGCTCCTGCCAAAG
GCCTCCCACATGCATTTCCCACATTGGATGCGGTCACCAAGACGGCGATC
GTGGGGAGGAACGCGCATGCGCTCAGGAGATGCCTTCCTATGCGGCGACA
GGATTGGCTGCGTCCTGTACGTTGCTGGCGGCCTCCTTATCTAGCTCTCT
AGTGTCTGCTTTTGTTGCTCCTGCCAAAGGCCTCCCACATGCATTTCCCA
CATTGGATGCGGTCACCAAGACGGCGATCGTGGGGAGGAACGCGCATGCG
CTCAGGAGCACCTTAGTAGACAAGGACAAAGAGGAGGTGACGGAGTACTT
CAACAACAACGGCTTCGAACGGTGGAACAAGATCTACTCCGAGTCGGACG
AGGTTAACAACGTCCAGAGAGATATCCGCACCGGCCACGCCCAGACCATC
GACAAGCACCTTAGTAGACAAGGACAAAGAGGAGGTGACGGAGTACTTCA
ACAACAACGGCTTCGAACGGTGGAACAAGATCTACTCCGAGTCGGACGAG
GTTAACAACGTCCAGAGAGATATCCGCACCGGCCACGCCCAGACCATCGA
CAAGGTCTTGAGGTGGGTGGAAGAAGACGGGAGCGCCAACAGCGTCTTCT
GCGACACAGGCTGCGGAGGTCTTGAGGTGGGTGGAAGAAGACGGGAGCGC
CAACAGCGTCTTCTGCGACACAGGCTGCGGAGTCGGCTCGCTGTCGATCC
CGCTGGCAAGAATGGGAGCCACACTTGCTTCGTCCGACATCTCGGCCGCG
ATGACTGGGGAGGCCGCGGAAAGGGCGAAGTCGGCTCGCTGTCGATCCCG
CTGGCAAGAATGGGAGCCACACTTGCTTCGTCCGACATCTCGGCCGCGAT
GACTGGGGAGGCCGCGGAAAGGGCGAAGGCCGAGCTAGGTAAGGACTCGG
AGCGGATAAGCTTCACCACCTCGGACCTGGAGAATCTTTCGGGCGAATAC
GACACCGTTCTCTGCATTGACGTAATGATCCATTACCCCACTAAAAAGGC
CGAGCTAGGTAAGGACTCGGAGCGGATAAGCTTCACCACCTCGGACCTGG
AGAATCTTTCGGGCGAATACGACACCGTTCTCTGCATTGACGTAATGATC
CATTACCCCACTAAAAAGATGTCGGACATGGTGAGGAAGCTGTGCAGTAT
GTCGAAGAACCGGGTGATCCTGTCCTTCGCACCGGACACTTGGTACTACT
CTCTTCTCAAGAAGATGTCGGACATGGTGAGGAAGCTGTGCAGTATGTCG
AAGAACCGGGTGATCCTGTCCTTCGCACCGGACACTTGGTACTACTCTCT
TCTCAAGAAGGTCGGCGAGTTCTTCCCCGGTCCCTCAAAGACCACAAGAG
CTTACCTGCACACCGAGGAAGCGGTTAGGGGGCCTTGGCCGCGGAAGGCT
TTAAGGTCAAGAGAACAGAGATGAGTCGGCGAGTTCTTCCCCGGTCCCTC
AAAGACCACAAGAGCTTACCTGCACACCGAGGAAGCGGTTAGGGGGCCTT
GGCCGCGGAAGGCTTTAAGGTCAAGAGAACAGAGATGA
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