mRNA_P-lacustris_contig1083.701.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1083.701.1
Unique NamemRNA_P-lacustris_contig1083.701.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1083.701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1083contigP-lacustris_contig1083:15417..18861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_007790.1
Exons3
Model size1269
Cds size1269
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1083.701.1prot_P-lacustris_contig1083.701.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1083 15417..18861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.098173-CDS-P-lacustris_contig1083:15416..160341622815359.098173-CDS-P-lacustris_contig1083:15416..16034Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 15417..16034 -
1693493498.428429-CDS-P-lacustris_contig1083:15416..160341693493498.428429-CDS-P-lacustris_contig1083:15416..16034Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 15417..16034 -
1622815359.1121333-CDS-P-lacustris_contig1083:16483..168911622815359.1121333-CDS-P-lacustris_contig1083:16483..16891Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 16484..16891 -
1693493498.4389129-CDS-P-lacustris_contig1083:16483..168911693493498.4389129-CDS-P-lacustris_contig1083:16483..16891Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 16484..16891 -
1622815359.1248581-CDS-P-lacustris_contig1083:18618..188611622815359.1248581-CDS-P-lacustris_contig1083:18618..18861Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 18619..18861 -
1693493498.4482632-CDS-P-lacustris_contig1083:18618..188611693493498.4482632-CDS-P-lacustris_contig1083:18618..18861Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1083 18619..18861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1083.701.1

>prot_P-lacustris_contig1083.701.1 ID=prot_P-lacustris_contig1083.701.1|Name=mRNA_P-lacustris_contig1083.701.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=423bp
MDRDRTLEEELEELLLTREQIQASSSTPRQRLEDARAMAESNSEESVGEE
PAPYTADGGCDWSYPPEEETSYLMQAKNNAAKLSHAMADSGEWKCFQEVN
IESQRALAEMNETLESLRQWKEQRMIVSPSSGPVCPTGAPTTLSKLPLLS
EANSTLRMSRSSSKTQAIVPRRGSNKSASPGLHRLADSDHVCVNDHQNSF
GEEFVGGGHDPLLNRWQEHHLRVHQAVGRLQEQLQHVVTLSVSTRSDGTA
LAADTVGGDKEANIMTDESHRDALRIRDLLARGGEYGPSAISTFNDSDGG
DSIARLAELHRDVDDLQMRQWIQNTRTQARDRAEVFAREVCNDILRGTGS
AAVGRMEGELDAFAEELDSILLRLDQDRDDDDEEEGAEGYDGDDIAVVEH
DLPAKERAPVADAHVGRRAVAE*
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mRNA from alignment at P-lacustris_contig1083:15417..18861-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1083.701.1 ID=mRNA_P-lacustris_contig1083.701.1|Name=mRNA_P-lacustris_contig1083.701.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3445bp|location=Sequence derived from alignment at P-lacustris_contig1083:15417..18861- (Pleurocladia lacustris SAG_25_93)
ATGGACAGAGATAGAACTTTGGAAGAGGAGTTAGAGGAGTTGTTGCTGAC
ACGGGAGCAGATCCAAGCATCATCGTCGACTCCTCGACAGAGGCTGGAGG
ACGCGAGGGCCATGGCTGAAAGCAACTCCGAAGAAAGTGTCGGAGAAGAG
CCGGCCCCATACACTGCAGATGGTGGCTGCGATTGGAGCTATCCGCCCGA
GGAAGAAACGTCATATCTTATGCAGGCAAAAAATAACGCAGCAGTCTCCA
CGAGTAATCCTTGTGTTCGTTGTGTGTTTTTCATATTAACCCTTCTGTGC
CTTCAGGCGGAAAAAAATGATCATTTTATTGATCACCTCTATTATACGTT
CGTAGAGGGATGGGAACAAAACAACCTGATCCCCAGCATCAATGGGAGTT
GTACAGCACTAGAGAGAACGTCCACGCGCGTAGGTGACCACGCATATACC
ATCTAAAGCTCGCACATAGACTGGGACAGTAGCTCAGTTGTACATGCGCT
TCTTCACCTGTCAACTCGCTCGCTCGGCCGCTCTTCTTACACAAGATCCA
CTTCGAAATGAACTGCTACATTTCACGCGCTGCATAATACATACAACATG
TTGCACATACTATACTGTACACATACACAGGACACACCCCACACACTGTG
CATCATTGTCGCGCACACACAGCAGCGGTAGCTTGCTCGCTGCTTAGGTC
TGTCAAACTTCGCGCTTGTGACAGAGGAGCTCTAGTGAGCCCGAAGGCCA
ATGCCTGGTGTGGGATGTGGGGCAGCAGAGAAGTACAGAAGTGCTGTAAA
GCCTGAGGGTCTACAAGTGGAAAAAATTGATCATTTGGTGGCCAAAAATT
GGTCATTCGTTATTATACTGAATAAAGAGGACTGGCACGTGCTGGATAGC
AACGACTTGCACGCCTAGCGCGTTCGTTTTGAAAAAATTTCCCGCTTGGC
GATGCTTTACACACCCTCAGAAACACCACAAGCCTGTCGCGGACGTTTGT
CACGACCCCTGGGCCCAGATAGCTTCTGCCCTGGAGAAGTACACATCTGG
CTCAGAGCTGTACTTCTCTCTCGCTCCTTCTACCTCTTCCCATGTTTTTT
TTTTTTGTGGTTCAGAAAAAAAAAAACTAGACCCACAGCTTCTTTGCAGG
TGAGACCTACAATACAACATCAGTTTTTCTCATAAATCAATTTTTGGACA
TACGATGTCCTCTTGCATAATTTTGTGACCACAAATCACACCATCACCCA
CACACACCCAACATGTGCAACTACCAAAACCACTGACTGCTAAGATATAC
TGTGAATCAAGCCATCGCTAATCTATCTTGGACACCATTTCCACAGATAG
AGATGGTTCTGTTTTGTTTCGTAAAAAAAAAAAAAACATCAAAGGAAGAC
TGCCATCTGAGAAGTCCCCTGCAGGCGGTTTGTGTCCAAGTCTTCTCAGT
GACGGTTAAAATGACATCTGCTGCCTATTTGACTCGTTCTGTGTGTGGAA
GTCTCTACGCTGTGTGGCTGGAACAAAAACATAAGTAGAGGTAGAAAGCT
TATATTAAAACTTCCATTCAGAACTCTGCGAAGTCTACGACAAACGTTAG
AGAAGTGTTGTTAGTAAGCTTATCTGCTGAATCTACTTTTTTCGCACGGC
GATATCTTTTTGGAATTTATAACTTCGTGGCAGTAAAAGAGTGCACAAAA
GCTCAATTTGTTTGATGCATGCTCGGTTTGGCGAGCCACATGTCGCATGT
GTAATGGCGTTGTGAAACACTCAGATGATAGCAAGATATCATGAGTTGTG
GGTAGTCAAACATTTATTTGTATAAATGCAGCAGGCACACGCCACCTTTT
CGGTACCCCGCTTGACCGAACTACCACGAAAAAAGCACAATCTCCAAATC
CCACGGCGGTGGAACCCTCAAGCCGTTGTTGATGTAGTTTTGCTTTCACG
TGCGTTCGCTGCTCTCGTAGAAGCTCTCTCACGCCATGGCGGACAGTGGA
GAGTGGAAGTGCTTTCAAGAGGTCAACATTGAGAGCCAGCGTGCCCTTGC
AGAGATGAACGAGACCTTGGAATCTCTCCGCCAGTGGAAAGAGCAGCGCA
TGATTGTTTCACCATCCTCCGGACCAGTATGTCCTACAGGCGCGCCAACC
ACCTTGTCTAAGCTGCCGTTACTCTCCGAAGCAAACTCCACCCTTCGTAT
GAGCCGTTCATCGTCGAAGACGCAGGCGATAGTGCCGAGGAGGGGCAGCA
ACAAATCGGCATCACCGGGGCTACATCGTCTTGCTGACTCCGACCACGTT
TGTGTCAACGACCATCAGAATTCATTCGGCGAAGAGTTCGTCGGTGGTGG
GCATGATCCTCTTCTCAATCGATGGCAGGTATAGTAAGTTGGTTGTAGAT
GCGGTAAATTGCAAGTTGAGTGAAGGTCAGGCGCTACCCAGTACTACAAA
CTCGACAGACGAATGCGAGTATATTCCATGAAGCTACCCCTCGACAACCA
TGGCCTCGCTGTTGCACTGGGTTTGAGGCACTGTTTTGCGCCCCAACGTA
GGTTATACCCTCCTGCTTGGTGTTGTCGGCCGAAGCAGAATAAGCAAGGA
AATGAACCTCGACCCCGAGAGGTTCGATTCTTCACAACGGGTACCAACAT
TCGTCCGCACTCTCCTTGTTGGAGGTAGTGTCTAGCGGGGAAGCAGCCGG
TGTCTTGTTAGCCTTAGGTTTTTGAAATTCCGTCGCACATCCAACTTGCT
TTCGTAGCAGCGACACCTGTATGGTATGGTGCCTTGGAATGCCAAACGCC
GTCTGGTTCAACGGACTTACATTGCAGGAGCACCACCTTCGGGTGCATCA
GGCAGTTGGGAGACTCCAGGAGCAGCTGCAGCACGTTGTTACCTTATCTG
TATCAACGCGCAGTGATGGTACAGCCCTTGCCGCTGATACCGTTGGTGGT
GACAAAGAAGCCAACATCATGACGGATGAATCACACAGAGATGCGCTACG
TATTCGGGATTTACTAGCCCGAGGAGGGGAATATGGGCCGTCGGCTATCT
CAACATTCAACGACAGCGATGGTGGCGACAGCATAGCTCGTTTGGCAGAG
CTCCATCGAGACGTAGACGACCTCCAGATGCGTCAATGGATCCAAAACAC
GAGAACTCAGGCGCGCGATCGCGCGGAAGTTTTTGCCCGCGAGGTTTGCA
ACGATATCTTACGGGGCACGGGATCTGCTGCAGTGGGACGAATGGAGGGA
GAACTCGACGCCTTTGCAGAGGAGTTGGACTCTATTCTGCTGAGGTTAGA
CCAGGACCGCGATGATGATGACGAAGAAGAAGGTGCCGAAGGCTACGATG
GGGATGATATTGCGGTGGTGGAACATGACCTCCCTGCGAAGGAACGCGCT
CCAGTTGCAGATGCGCACGTAGGCCGCCGTGCAGTGGCAGAGTAG
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Coding sequence (CDS) from alignment at P-lacustris_contig1083:15417..18861-

>mRNA_P-lacustris_contig1083.701.1 ID=mRNA_P-lacustris_contig1083.701.1|Name=mRNA_P-lacustris_contig1083.701.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2538bp|location=Sequence derived from alignment at P-lacustris_contig1083:15417..18861- (Pleurocladia lacustris SAG_25_93)
ATGGACAGAGATAGAACTTTGGAAGAGGAGTTAGAGGAGTTGTTGCTGAC
ACGGGAGCAGATCCAAGCATCATCGTCGACTCCTCGACAGAGGCTGGAGG
ACGCGAGGGCCATGGCTGAAAGCAACTCCGAAGAAAGTGTCGGAGAAGAG
CCGGCCCCATACACTGCAGATGGTGGCTGCGATTGGAGCTATCCGCCCGA
GGAAGAAACGTCATATCTTATGCAGGCAAAAAATAACGCAGCAATGGACA
GAGATAGAACTTTGGAAGAGGAGTTAGAGGAGTTGTTGCTGACACGGGAG
CAGATCCAAGCATCATCGTCGACTCCTCGACAGAGGCTGGAGGACGCGAG
GGCCATGGCTGAAAGCAACTCCGAAGAAAGTGTCGGAGAAGAGCCGGCCC
CATACACTGCAGATGGTGGCTGCGATTGGAGCTATCCGCCCGAGGAAGAA
ACGTCATATCTTATGCAGGCAAAAAATAACGCAGCAAAGCTCTCTCACGC
CATGGCGGACAGTGGAGAGTGGAAGTGCTTTCAAGAGGTCAACATTGAGA
GCCAGCGTGCCCTTGCAGAGATGAACGAGACCTTGGAATCTCTCCGCCAG
TGGAAAGAGCAGCGCATGATTGTTTCACCATCCTCCGGACCAGTATGTCC
TACAGGCGCGCCAACCACCTTGTCTAAGCTGCCGTTACTCTCCGAAGCAA
ACTCCACCCTTCGTATGAGCCGTTCATCGTCGAAGACGCAGGCGATAGTG
CCGAGGAGGGGCAGCAACAAATCGGCATCACCGGGGCTACATCGTCTTGC
TGACTCCGACCACGTTTGTGTCAACGACCATCAGAATTCATTCGGCGAAG
AGTTCGTCGGTGGTGGGCATGATCCTCTTCTCAATCGATGGCAGAAGCTC
TCTCACGCCATGGCGGACAGTGGAGAGTGGAAGTGCTTTCAAGAGGTCAA
CATTGAGAGCCAGCGTGCCCTTGCAGAGATGAACGAGACCTTGGAATCTC
TCCGCCAGTGGAAAGAGCAGCGCATGATTGTTTCACCATCCTCCGGACCA
GTATGTCCTACAGGCGCGCCAACCACCTTGTCTAAGCTGCCGTTACTCTC
CGAAGCAAACTCCACCCTTCGTATGAGCCGTTCATCGTCGAAGACGCAGG
CGATAGTGCCGAGGAGGGGCAGCAACAAATCGGCATCACCGGGGCTACAT
CGTCTTGCTGACTCCGACCACGTTTGTGTCAACGACCATCAGAATTCATT
CGGCGAAGAGTTCGTCGGTGGTGGGCATGATCCTCTTCTCAATCGATGGC
AGGAGCACCACCTTCGGGTGCATCAGGCAGTTGGGAGACTCCAGGAGCAG
CTGCAGCACGTTGTTACCTTATCTGTATCAACGCGCAGTGATGGTACAGC
CCTTGCCGCTGATACCGTTGGTGGTGACAAAGAAGCCAACATCATGACGG
ATGAATCACACAGAGATGCGCTACGTATTCGGGATTTACTAGCCCGAGGA
GGGGAATATGGGCCGTCGGCTATCTCAACATTCAACGACAGCGATGGTGG
CGACAGCATAGCTCGTTTGGCAGAGCTCCATCGAGACGTAGACGACCTCC
AGATGCGTCAATGGATCCAAAACACGAGAACTCAGGCGCGCGATCGCGCG
GAAGTTTTTGCCCGCGAGGTTTGCAACGATATCTTACGGGGCACGGGATC
TGCTGCAGTGGGACGAATGGAGGGAGAACTCGACGCCTTTGCAGAGGAGT
TGGACTCTATTCTGCTGAGGTTAGACCAGGACCGCGATGATGATGACGAA
GAAGAAGGTGCCGAAGGCTACGATGGGGATGATATTGCGGTGGTGGAACA
TGACCTCCCTGCGAAGGAACGCGCTCCAGTTGCAGATGCGCACGTAGGCC
GCCGTGCAGTGGCAGAGTAGGAGCACCACCTTCGGGTGCATCAGGCAGTT
GGGAGACTCCAGGAGCAGCTGCAGCACGTTGTTACCTTATCTGTATCAAC
GCGCAGTGATGGTACAGCCCTTGCCGCTGATACCGTTGGTGGTGACAAAG
AAGCCAACATCATGACGGATGAATCACACAGAGATGCGCTACGTATTCGG
GATTTACTAGCCCGAGGAGGGGAATATGGGCCGTCGGCTATCTCAACATT
CAACGACAGCGATGGTGGCGACAGCATAGCTCGTTTGGCAGAGCTCCATC
GAGACGTAGACGACCTCCAGATGCGTCAATGGATCCAAAACACGAGAACT
CAGGCGCGCGATCGCGCGGAAGTTTTTGCCCGCGAGGTTTGCAACGATAT
CTTACGGGGCACGGGATCTGCTGCAGTGGGACGAATGGAGGGAGAACTCG
ACGCCTTTGCAGAGGAGTTGGACTCTATTCTGCTGAGGTTAGACCAGGAC
CGCGATGATGATGACGAAGAAGAAGGTGCCGAAGGCTACGATGGGGATGA
TATTGCGGTGGTGGAACATGACCTCCCTGCGAAGGAACGCGCTCCAGTTG
CAGATGCGCACGTAGGCCGCCGTGCAGTGGCAGAGTAG
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