mRNA_P-lacustris_contig1082.697.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1082.697.1
Unique NamemRNA_P-lacustris_contig1082.697.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1082.697.1 vs. uniprot
Match: D8LD02_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD02_ECTSI)

HSP 1 Score: 400 bits (1027), Expect = 2.220e-130
Identity = 186/211 (88.15%), Postives = 195/211 (92.42%), Query Frame = 1 
Query: 1252 FLLGGGCFRQQGEFVNDRLKCINKIGHALHDLDPVLNKYSYEKRVGQVSRDLGLHAPLVVQSMYIFKQPRIGGEVTPHQDGAFLYTEPQSVVGYWWALEDCTVSNGCLWAVPGSHSRVVRRRFKRSPTGEGCEFEPPEAEAFDVEGAVPLEVKAGTLVLLHHSLVHYSAANTSEKSRHAYSIHVVEGKEGFRYPKDNWLQRPDDAPFQELP 1884
            F    G F  +GEFV+DRLK INKIGHALHDLDPV+ KYSYEKRVGQVSRDLGL  PL VQSMYIFKQPRIGGEVTPHQDGAFLYTEPQSVVGYWWALEDCT+SNGCLWAVPGSH RVV+RRFKRSPTGEGCEFEPPEAEAFDVEGAVPLEVKAGTL+LLHHS+VHYS ANTSEKSRHAYSIHVVEGKEGFRYP+DNWLQRP + PFQELP
Sbjct:   86 FFWEAGAFDDKGEFVHDRLKSINKIGHALHDLDPVMKKYSYEKRVGQVSRDLGLSTPLAVQSMYIFKQPRIGGEVTPHQDGAFLYTEPQSVVGYWWALEDCTLSNGCLWAVPGSHRRVVKRRFKRSPTGEGCEFEPPEAEAFDVEGAVPLEVKAGTLILLHHSVVHYSEANTSEKSRHAYSIHVVEGKEGFRYPEDNWLQRPGETPFQELP 296
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BLAST of mRNA_P-lacustris_contig1082.697.1 vs. uniprot
Match: W7TZY3_9STRA (Phytanoyl-dioxygenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZY3_9STRA)

HSP 1 Score: 283 bits (724), Expect = 2.350e-85
Identity = 134/208 (64.42%), Postives = 153/208 (73.56%), Query Frame = 1 
Query: 1264 GGCFRQQGEFVNDRLKCINKIGHALHDLDPVLNKYSYEKRVGQVSRDLG-LHAPLVVQSMYIFKQPRIGGEVTPHQDGAFLYTEPQSVVGYWWALEDCTVSNGCLWAVPGSHSRVVRRRFKRSPTGEGCEFEPPEAEAFDVEGAVPLEVKAGTLVLLHHSLVHYSAANTSEKSRHAYSIHVVEGKEGFRYPKDNWLQRPDDAPFQELP 1884
            G   +  G F   R   INK+GHALHDLDP+  K +Y  ++GQ++R +G LH PLV QSMYIFKQPRIGG+V  HQDG FLYTEPQSVVG+WWALEDCT  NGCLWAVPGSH + V RRF+R    +G EF PPEA  +D+ G +PLEVKAG LVLLHH+LVHYS  N S  SRHAYSIHVVEG     YP+DNWLQR    PFQ LP
Sbjct:  100 GAIDKATGAFRQPRATSINKVGHALHDLDPLFQKVTYTPQIGQLARAVGGLHVPLVAQSMYIFKQPRIGGKVGAHQDGTFLYTEPQSVVGFWWALEDCTQKNGCLWAVPGSHRQGVSRRFRRRNDNKGTEFYPPEAVEWDLSGGIPLEVKAGALVLLHHALVHYSLENASAASRHAYSIHVVEGDGSSLYPQDNWLQRGSTMPFQPLP 307
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BLAST of mRNA_P-lacustris_contig1082.697.1 vs. uniprot
Match: A0A835YTQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTQ3_9STRA)

HSP 1 Score: 278 bits (711), Expect = 1.180e-83
Identity = 123/190 (64.74%), Postives = 149/190 (78.42%), Query Frame = 1 
Query: 1291 FVNDRLKCINKIGHALHDLDPVLNKYSYEKRVGQVSRDLGLHAPLVVQSMYIFKQPRIGGEVTPHQDGAFLYTEPQSVVGYWWALEDCTVSNGCLWAVPGSHSRVVRRRFKRSPTGE-GCEFEPPEAEAFDVEGAVPLEVKAGTLVLLHHSLVHYSAANTSEKSRHAYSIHVVEGKEGFRYPKDNWLQRP 1857
            F  +R +CINKIGHALHDLDP   + SY++R+G++ ++LG+  PL  QSMYIFKQPRIGG+V PHQDGAFLYT+PQSV+G+WW LE CT+ NGCLWAVPGSH   V RRF+R   G  GCEFEPPE   +D    VPLE  AGTLV+LH++LVHYS  N S+KSRHAY++HVV+GK G  YP DNWLQ+P
Sbjct:   96 FKQERTQCINKIGHALHDLDPTFKQLSYDERIGRICKELGMSTPLACQSMYIFKQPRIGGQVRPHQDGAFLYTQPQSVIGFWWGLERCTLENGCLWAVPGSHRAGVTRRFRRCREGAPGCEFEPPEPVEWDTSAGVPLECDAGTLVILHNALVHYSLDNKSDKSRHAYTLHVVDGKPGIEYPADNWLQKP 285
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BLAST of mRNA_P-lacustris_contig1082.697.1 vs. uniprot
Match: A0A7S1CJ62_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJ62_9STRA)

HSP 1 Score: 252 bits (644), Expect = 2.950e-73
Identity = 121/209 (57.89%), Postives = 144/209 (68.90%), Query Frame = 1 
Query: 1249 TFLLGGGCFRQQGEFVNDRLKCINKIGHALHDLDPVLNKYSYEKRVGQVSRDLGLHAPLVVQSMYIFKQPRIGGEVTPHQDGAFLYTEPQSVVGYWWALEDCTVSNGCLWAVPGSHSRVVRRRFKRSPTGEGCEFEPPEAEAFDVEGAVPLEVKAGTLVLLHHSLVHYSAANTSEKSRHAYSIHVVEGKEGFRYPKDNWLQRPDDAPFQ 1875
            +F    G F + G  V ++ K INKIGHALHD D +  + SY+ R+  + R L    PL+ Q+MYIFKQP IGG V PHQDG FLYT+PQSV G+W+A+EDCTV NGCLWAVP SH   V RRF R  +G G  F+PPE      EGA  LEV AGTLVLLH + VH+S AN S  SRHAY+IHVVEG +G  YP DNWLQRP + PF+
Sbjct:  117 SFFFEEGAFDEAGALVREKDKAINKIGHALHDRDDLFREVSYDPRLAAMCRALDYTLPLLTQTMYIFKQPGIGGVVGPHQDGTFLYTQPQSVTGFWFAMEDCTVDNGCLWAVPRSHMDGVPRRFMRDASGSGTAFDPPEPVTLPTEGAQCLEVPAGTLVLLHSANVHFSHANKSALSRHAYTIHVVEGAKGVTYPADNWLQRPPEDPFR 325
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BLAST of mRNA_P-lacustris_contig1082.697.1 vs. uniprot
Match: A0A6V1UDU3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UDU3_HETAK)

HSP 1 Score: 251 bits (642), Expect = 3.730e-73
Identity = 126/205 (61.46%), Postives = 148/205 (72.20%), Query Frame = 1 
Query: 1273 FRQQGEFVNDRLKCINKIGHALHDLDPVLNKYSYEKRVGQVSRDLGLHAPLVVQSMYIFKQPRIGGEVTPHQDGAFLYTEPQSVVGYWWALEDCTVSNGCLWAVPGSHSRV-VRRRFKRSPTGEGCEFEPPEAEA-FDVEGAVPLEVKAGTLVLLHHSLVHYSAANTSEKSRHAYSIHVVEGKEGFRYPKDNWLQRPDDAPFQEL 1881
            F   G F   + + INKIGHALHDL+ V    +Y+ RVG+++RDLGL  PL VQSMYIFKQPRIGG+V  HQDGAFLYT PQSV+G+WW LED +++NGCLWAVPGSH    V RRFKR   G G  F+PP   A FD+ GAVPLE+KAG+LVLLH  LVHYS  N S +SRHAYS+H V+G  G  YP DNWLQ      F+EL
Sbjct:  123 FDDDGNFRQKKEQSINKIGHALHDLNSVFQNATYDTRVGEIARDLGLVKPLAVQSMYIFKQPRIGGKVGAHQDGAFLYTRPQSVLGFWWPLEDTSLANGCLWAVPGSHKTTPVSRRFKRDGKG-GTTFDPPGPPAEFDLTGAVPLELKAGSLVLLHAQLVHYSLENRSPRSRHAYSVHAVDGAPGVAYPADNWLQTATH--FREL 324
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BLAST of mRNA_P-lacustris_contig1082.697.1 vs. uniprot
Match: K3WS29_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS29_GLOUD)

HSP 1 Score: 238 bits (607), Expect = 2.000e-68
Identity = 117/196 (59.69%), Postives = 136/196 (69.39%), Query Frame = 1 
Query: 1315 INKIGHALHDLDPVLNKYSYEKRVGQVSRDLGLHAPLVVQSMYIFKQPRIGGEVTPHQDGAFLYTEPQSVVGYWWALEDCTVSNGCLWAVPGSHSRVVRRRFKRSPTGEGC-------EFEPPEAEAFDVEGAVPLEVKAGTLVLLHHSLVHYSAANTSEKSRHAYSIHVVEGKEGFRYPKDNWLQRPDDAPFQEL 1881
            INKIGH LH+LDP   + SY   V  + + LG   PL VQSMYIFKQP IGGEV+ HQDG+FLYTEPQSVVG WWALEDCT+ NGCL  VPGSHS  +R+R +R+ + E         E +PP+AE FDV  +VPL+   G LVLLH S VHYS AN S+ SRHAYSIHVVE K    YP+DNWLQ   + PF  L
Sbjct:  108 INKIGHNLHNLDPAFKEVSYAPEVKGILKSLGYQRPLAVQSMYIFKQPSIGGEVSAHQDGSFLYTEPQSVVGLWWALEDCTLENGCLHGVPGSHSEPIRQRLRRTTSEEQAQNGGMLTEMKPPKAEPFDVSQSVPLKTNKGDLVLLHSSFVHYSNANHSKSSRHAYSIHVVESK-NVHYPEDNWLQTTGNVPFTAL 302
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BLAST of mRNA_P-lacustris_contig1082.697.1 vs. uniprot
Match: A0A8K1FM32_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FM32_PYTOL)

HSP 1 Score: 238 bits (606), Expect = 4.820e-68
Identity = 112/196 (57.14%), Postives = 138/196 (70.41%), Query Frame = 1 
Query: 1315 INKIGHALHDLDPVLNKYSYEKRVGQVSRDLGLHAPLVVQSMYIFKQPRIGGEVTPHQDGAFLYTEPQSVVGYWWALEDCTVSNGCLWAVPGSHSRVVRRRFKR-SPTGEGC------EFEPPEAEAFDVEGAVPLEVKAGTLVLLHHSLVHYSAANTSEKSRHAYSIHVVEGKEGFRYPKDNWLQRPDDAPFQEL 1881
            +NKIGH LH+LDP   + SY  +   + + LG   P+ VQSMYIFKQP IGGEV+PHQDG FLYTEPQSV+G+WWALEDCT+ NGCL+ VPGSH   VR+RF+R SP  +        E  P  AE FD+  +VP+E K G +VLLH++ VHYS ANTS KSRHAYS+H+VE +    YP DNWLQ  D  PF+ +
Sbjct:  126 VNKIGHNLHNLDPAFREISYAAKGQAILKSLGYQRPMAVQSMYIFKQPSIGGEVSPHQDGTFLYTEPQSVIGFWWALEDCTLDNGCLYGVPGSHKDGVRQRFRRTSPEQQAAGETNLLETVPATAEPFDISQSVPIETKKGDMVLLHNAFVHYSMANTSPKSRHAYSVHIVESR-NVTYPADNWLQNTDFKPFEPM 320
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BLAST of mRNA_P-lacustris_contig1082.697.1 vs. uniprot
Match: A0A7S3QW42_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QW42_DUNTE)

HSP 1 Score: 236 bits (601), Expect = 8.040e-68
Identity = 110/189 (58.20%), Postives = 131/189 (69.31%), Query Frame = 1 
Query: 1315 INKIGHALHDLDPVLNKYSYEKRVGQVSRDLGLHAPLVVQSMYIFKQPRIGGEVTPHQDGAFLYTEPQSVVGYWWALEDCTVSNGCLWAVPGSHSRVVRRRFKRSPTGEGCEFEPPEAEAFDVEGAVPLEVKAGTLVLLHHSLVHYSAANTSEKSRHAYSIHVVEGKEGFRYPKDNWLQRPDDAPFQEL 1881
            +NK+GHALHDLDP    +S  +RV  V + L    PL VQSMYIFKQPRIGGEV PHQD  FLYTEP + VG WWALEDCT  NGCLWA PG H + + RRF      +   F+ P+ E +D+   VPLE  AG+LVLLH   VHYSA NTS+ SRH+YS+HVVEG    +YP DNWLQRP + PF+ +
Sbjct:   96 VNKVGHALHDLDPTFRAFSRNERVASVLKSLDYKVPLPVQSMYIFKQPRIGGEVVPHQDSTFLYTEPMTTVGLWWALEDCTKENGCLWAQPGIHKQGLSRRFLVREEDKTSTFDKPKVE-YDLGNFVPLECPAGSLVLLHGENVHYSAENTSDASRHSYSMHVVEGASTCKYPADNWLQRPQEMPFEPM 283
[Close]
BLAST of mRNA_P-lacustris_contig1082.697.1 vs. uniprot
Match: A0A5D6YG36_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YG36_9STRA)

HSP 1 Score: 236 bits (601), Expect = 1.590e-67
Identity = 115/197 (58.38%), Postives = 137/197 (69.54%), Query Frame = 1 
Query: 1315 INKIGHALHDLDPVLNKYSYEKRVGQVSRDLGLHAPLVVQSMYIFKQPRIGGEVTPHQDGAFLYTEPQSVVGYWWALEDCTVSNGCLWAVPGSHSRVVRRRFKRSPTGEGC-------EFEPPEAEAFDVEGAVPLEVKAGTLVLLHHSLVHYSAANTSEKSRHAYSIHVVEGKEGFRYPKDNWLQR-PDDAPFQEL 1881
            INKIGH LH+LDP   + SY   V  + R LG   P+ VQSMYIFKQP IGGEV+ HQDG+FLYTEPQSV+G+WWALEDCT+ NGCL  VPGSH+  +R+R +R+   E         E +P  AE FD+ G+VPLE K G LVLLH S VH+S AN S  SRHAYSIHVVE  +G  YP DNWLQ  P + PF+ +
Sbjct:  108 INKIGHNLHNLDPAFERVSYAPGVAAILRSLGYRRPMAVQSMYIFKQPSIGGEVSAHQDGSFLYTEPQSVLGFWWALEDCTLENGCLHGVPGSHAEPIRQRLRRTTPAEQAVNGGVLTEMKPATAEPFDLSGSVPLETKKGDLVLLHSSFVHFSNANRSRNSRHAYSIHVVES-DGVHYPVDNWLQTTPGNPPFKVM 303
[Close]
BLAST of mRNA_P-lacustris_contig1082.697.1 vs. uniprot
Match: A0A2D4BHW0_PYTIN (Phytanoyl-CoA dioxygenase domain-containing protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHW0_PYTIN)

HSP 1 Score: 236 bits (601), Expect = 2.830e-67
Identity = 111/192 (57.81%), Postives = 135/192 (70.31%), Query Frame = 1 
Query: 1315 INKIGHALHDLDPVLNKYSYEKRVGQVSRDLGLHAPLVVQSMYIFKQPRIGGEVTPHQDGAFLYTEPQSVVGYWWALEDCTVSNGCLWAVPGSHSRVVRRRFKRSP------TGEGCEFEPPEAEAFDVEGAVPLEVKAGTLVLLHHSLVHYSAANTSEKSRHAYSIHVVEGKEGFRYPKDNWLQRPDDAPF 1872
            INKIGH LH+LD   +  SY  RV  + + L    P+ VQSMYIFKQP IGGEV+PHQDG +LYTEPQSV+G+WWALEDCT+ NGCL+ VPGSH   VR+RF+R+       TG   E  PP+ E FD+  +VP+E K G LVLLH++ VHYS ANTS +SRHAY++H+VE      YP DNWLQ  D  PF
Sbjct:  132 INKIGHNLHNLDAAFHAVSYAPRVKAILQSLEYVRPMAVQSMYIFKQPSIGGEVSPHQDGTYLYTEPQSVIGFWWALEDCTLDNGCLYGVPGSHVHGVRQRFRRTSADTQAATGNLLETVPPKVEPFDISASVPIETKKGDLVLLHNAFVHYSMANTSPRSRHAYAVHIVESH-NVAYPADNWLQNSDQKPF 322
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1082.697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD02_ECTSI2.220e-13088.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TZY3_9STRA2.350e-8564.42Phytanoyl-dioxygenase n=2 Tax=Monodopsidaceae TaxI... [more]
A0A835YTQ3_9STRA1.180e-8364.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1CJ62_9STRA2.950e-7357.89Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A6V1UDU3_HETAK3.730e-7361.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K3WS29_GLOUD2.000e-6859.69Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1FM32_PYTOL4.820e-6857.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3QW42_DUNTE8.040e-6858.20Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A5D6YG36_9STRA1.590e-6758.38Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4BHW0_PYTIN2.830e-6757.81Phytanoyl-CoA dioxygenase domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1082contigP-lacustris_contig1082:20313..25292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score400.6
Seed ortholog evalue6.8e-109
Seed eggNOG ortholog2880.D8LD02
Preferred namePHYHD1
KEGG koko:K00477,ko:K18741
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorysignal peptide
GOsGO:0001561,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016705,GO:0016706,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0048244,GO:0051213,GO:0055114,GO:0071704,GO:0072329,GO:1901575
EggNOG free text desc.phytanoyl-CoA dioxygenase activity
EggNOG OGsCOG5285@1,KOG3290@2759
EC1.14.11.18
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019
Exons6
Model size2460
Cds size948
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1082.697.1prot_P-lacustris_contig1082.697.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1082 21252..24719 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.5054727-UTR-P-lacustris_contig1082:20312..212511622815358.5054727-UTR-P-lacustris_contig1082:20312..21251Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1082 20313..21251 +
1693493498.09543-UTR-P-lacustris_contig1082:20312..212511693493498.09543-UTR-P-lacustris_contig1082:20312..21251Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1082 20313..21251 +
1622815358.6958733-UTR-P-lacustris_contig1082:24719..252921622815358.6958733-UTR-P-lacustris_contig1082:24719..25292Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1082 24720..25292 +
1693493498.157876-UTR-P-lacustris_contig1082:24719..252921693493498.157876-UTR-P-lacustris_contig1082:24719..25292Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1082 24720..25292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.6223981-CDS-P-lacustris_contig1082:21251..216351622815358.6223981-CDS-P-lacustris_contig1082:21251..21635Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 21252..21635 +
1693493498.1049278-CDS-P-lacustris_contig1082:21251..216351693493498.1049278-CDS-P-lacustris_contig1082:21251..21635Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 21252..21635 +
1622815358.6335745-CDS-P-lacustris_contig1082:22160..222291622815358.6335745-CDS-P-lacustris_contig1082:22160..22229Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 22161..22229 +
1693493498.1121104-CDS-P-lacustris_contig1082:22160..222291693493498.1121104-CDS-P-lacustris_contig1082:22160..22229Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 22161..22229 +
1622815358.6434815-CDS-P-lacustris_contig1082:22644..227611622815358.6434815-CDS-P-lacustris_contig1082:22644..22761Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 22645..22761 +
1693493498.1219244-CDS-P-lacustris_contig1082:22644..227611693493498.1219244-CDS-P-lacustris_contig1082:22644..22761Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 22645..22761 +
1622815358.6558177-CDS-P-lacustris_contig1082:23129..232551622815358.6558177-CDS-P-lacustris_contig1082:23129..23255Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 23130..23255 +
1693493498.1317492-CDS-P-lacustris_contig1082:23129..232551693493498.1317492-CDS-P-lacustris_contig1082:23129..23255Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 23130..23255 +
1622815358.6715095-CDS-P-lacustris_contig1082:23992..240611622815358.6715095-CDS-P-lacustris_contig1082:23992..24061Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 23993..24061 +
1693493498.140355-CDS-P-lacustris_contig1082:23992..240611693493498.140355-CDS-P-lacustris_contig1082:23992..24061Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 23993..24061 +
1622815358.6837714-CDS-P-lacustris_contig1082:24536..247191622815358.6837714-CDS-P-lacustris_contig1082:24536..24719Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 24537..24719 +
1693493498.1484377-CDS-P-lacustris_contig1082:24536..247191693493498.1484377-CDS-P-lacustris_contig1082:24536..24719Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 24537..24719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1082.697.1

>prot_P-lacustris_contig1082.697.1 ID=prot_P-lacustris_contig1082.697.1|Name=mRNA_P-lacustris_contig1082.697.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=316bp
MYRKIIFFQFLNGTLASVMNVQFSHHAVVVAAAVDAVVTLQTVQTSTQYL
RNIGTLQGKTSLNIKAKPFFSVRHLYPLRDEKWTPAAVRHIAYRLPCMIV
FQDTFLLGGGCFRQQGEFVNDRLKCINKIGHALHDLDPVLNKYSYEKRVG
QVSRDLGLHAPLVVQSMYIFKQPRIGGEVTPHQDGAFLYTEPQSVVGYWW
ALEDCTVSNGCLWAVPGSHSRVVRRRFKRSPTGEGCEFEPPEAEAFDVEG
AVPLEVKAGTLVLLHHSLVHYSAANTSEKSRHAYSIHVVEGKEGFRYPKD
NWLQRPDDAPFQELP*
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mRNA from alignment at P-lacustris_contig1082:20313..25292+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1082.697.1 ID=mRNA_P-lacustris_contig1082.697.1|Name=mRNA_P-lacustris_contig1082.697.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4980bp|location=Sequence derived from alignment at P-lacustris_contig1082:20313..25292+ (Pleurocladia lacustris SAG_25_93)
GGAGTGCGAAGAAATTAGGGAACGAGTGCAGCAGGTGGTGAAAGATATGG
ATCTCGACGAGGCTAGGACCATCTTCTCCACCGAGTACGTAAGGATCATG
ATCACAAGAATGATCATACGGGGATCATTCTCATTGTGGGCAAAGTGTAG
AATGGCATCTTGTAGGGAAACGCCTCTCTTATCCATTTTCTGGGGGACCT
GTGGGTGGCCACGGCGATGTTTTGCCTCTGAGATTGTATGCATGTGGTGC
GCTGCTTCGTTGTATCATAGGACAGCCTGGGAAGACAACAATGTGCTTTG
CAAACAGCTCGTCATCCACCATGACTACGTGGCGAAATCGCCCATGCAGC
GATTCATTCAACAGACTAAATGCATCCATTTTATCTCAAACTCCGGGCTG
CCTCCGTTTCCGGCCCGTCACATCTGGCAGGAGAGCGGCGTTGCAGTGTC
TGCTAAATTCGCTCGCGTCTTCTCGTAGCTGATGCTTCTTCGTCCCTCCC
AGTGAGCTGCCGCTTAGTTTAATTTTCGTCTGTGCCCATCCCTAGCCCCG
CCTTGCCCCCCCTCCTGCCCCCTTTCTTACTTGTATCAAAAATGTCTATG
CTTGCCTGGCCCTGTGACATTCGCAACTCCTCAGCGAAAGTAAGCATGCC
GAGGACGCGTACTTCCTCGGTAGCGGGGACAAGGTGGGTGTCGCTCTCAC
TACTGCAGTAAAGTGGGCCTATGGATCTTTATCAAGTATCAAGTGGTGCG
GAATCTGCGGAACCCCCACCATCGAAAAAAGTACCGAACGTACATTTCAC
TTGATTGTATGAGGAAGTAGTTTTTTCGCAAGCCTGGGTGTTGAGCGTTT
GAGTTAGCTCTTAACCACCGAAATTTGTCCCTTTGCTTTGAATTGCATAG
AGGACGAGGTGCTTGCTATGTCCGTGAGGACGAGCTTGCATGTACAGGAA
GATAATTTTTTTTCAATTCTTGAACGGTACCCTTGCTTCAGTCATGAACG
TACAGTTTTCCCATCATGCTGTTGTTGTTGCTGCTGCTGTTGATGCTGTC
GTGACCTTACAGACCGTTCAGACCTCTACCCAGTACCTCCGCAACATAGG
TACTCTTCAAGGGAAGACGAGCTTGAATATCAAAGCAAAGCCTTTTTTTT
CAGTTCGACACCTGTACCCTCTTCGCGATGAAAAATGGACGCCTGCTGCT
GTGCGTCATATCGCCTATCGTTTACCGTGCATGATTGTTTTTCAAGATAC
GTTTCTTTTGGGAGGCGGGTGCTTTCGACAACAAGGGGAGTTCGTAAACG
ACCGGCTGAAGTGCATCAACAAGGTGCGGCCACATGTTCTAGCGTGGTTC
AACAGGATAGGATAGGGTCTACCTAGCGTTAGTCGGATCGGTCGAACAAA
GAGACAAAGAAATACTCGTGCGGTGCGTTGGCCGACATTTATTTCGTGGA
AGAAGAGTGTCCTGCTCAACGCGTGCCGCCATGGCTAGCTACTGTGTTTA
ATTTGGCGCGCGTGCTCGTGTTCGACGTTGTTGTTGTTCTTGCACCGCCT
TGAGTGTAACTCCCTGTTCACAGGAACTGTATACCGCAGATTTGCAGCTG
GTTTGCCGGACATGATCCTCTTCGATTCTCCTATTCTTCCCAGTGTTGTT
CCTGCCTTGCAGTGCCAATTAATCACTCAATCAATCAATCAATCAATCGA
CCAACCAACCACTATAATCACTCTCTCAATTAATCAATCCCGCCGTCGTT
GGCGCCTGTTTGTCTTCCTCACATTCGTCTTCACATACGTGTCCAACGGT
GTTCGCTGTCCACGCTCTAATTGGTGTATGTCGCGTGTTTGTGTGCAGAT
CGGACATGCACTTCACGACTTGGATCCCGTCCTCAACAAATACAGCTACG
AGAAGCGAGTCGGGCAGGTGACAAGAAAACACGAGACGAGTCACGGACCG
ATCGACACGCTCCGAACATAGGATAAGCTTGTTTCTCGCCGAACAACGAA
ACCACTTAGACCACACTCCTAGGCGACGTCAGGAGCACCACACTCCCACG
CATTACTTTGAGCAGCGCTCTTCTTCTTTCAGGGCTCAAACGGCGAAAAG
CGTTATTCGAAACGACCACCCACGCTGGTCAAAGGTTTTTGTATTGCTTT
AATGTGGTGTTTTCCCTCCGCCTCCCGCCACCACCCTCTTCCTCCGAAAC
GATGCACGCCCATGTTCAACGGCTTGGGTACGAGCCGCGCCTTTCTGGGC
GACCCAAATCTTGTTTCGGCTGCTGTGTGGAAGATCTTGTACCTTGGCCT
GTCCTCACGTACCCATTTGCGATATGCAACAGGTCTCTCGCGACCTGGGA
CTCCACGCCCCTTTAGTGGTGCAGTCCATGTACATCTTCAAGCAGCCCCG
GATTGGCGGGGAGGTCACCCCGCACCAGGACGGGGCGTTCCTCTACACGG
TACATACGTAAACCTTCTTCTTGACGGCGCGCGTTTATGTTCCGTATGGA
CCGCACCGCCCCGCCCCCTTGCCGTACACATCATAACCTGGGCTATGCTT
TGCCTTCGAGATTTGAAAGCTTGGTTGCGCTGTACGTCAGAACCTGAACT
GTTCTTTGCTCTCAAGATCGGAAACCTCGGCGGTTTAGGTGACAAGGCCT
ACGTGGTTGTGGCGGTCATGCCGTTTTTGCCTAGTGTGTCTCCCGTCTGG
GATATATCTGACCCGTTTGGACCACTATTGTACCCCGCCGTTTAAAAGCG
CCGGCGTGTCTGTAAGTTCAAACGAGCGATTTTGTCACGCAAATCCCCGC
GTGTTCTGCTTGATCAGGAGCCCCAGTCTGTGGTAGGCTACTGGTGGGCG
TTGGAGGACTGCACGGTGTCCAACGGATGCCTCTGGGCGGTGCCCGGCTC
TCACAGTCGGGTGGTCAGGCGAAGGTTCAAGCGATCGCCGACGGTAAGCC
CAAACCCCCCATAACCCGGGATTCTTGAAAACAGCAGTTAATCATGGAAT
AGACGTAATGGATACCGTGGTTGGACAGTGGGGTTGAGGCATGCGTGGGG
GGTGAGTGTGTCACGGGGGCATTGTCCAGGGCAATGGTAAGCGTTGCCCT
GCTGTCGTGTCGCGGAGAAGACAGGTCCACTGCTTCCTCGGGACCTACTT
TGCCATTGCTGCCGCTGAGTCGTCGAATTGTGTTGCGATGCTGGACGTCC
GGTGTGCCAAGCCCACGGGCGTCGCCTGTGAGTTATCCTCGCCACCACCA
TTGCCACTTTCCACGGCGGCCACCACCACAAACGTAAAATGGAATCGTTT
TCGGCGAATAGGCCTCGTCGGCGGGCTTGCCCGTAATACATTCGTTTCAT
CGTTCCTCTGGTCCAAGTCAAACCAATAACACTAAGTGGGGCCAACCTGG
AGGAGGCCATAGAATCGAACCTTGGCTGACAGAAATCAGCCAGGCTGCAT
AAAGCAACCAAGCAATAACCAATACAGAGTTGCATCGAAGGAAACAACAG
AGTCTAAGACCGCTATCCGAAGGCACCACCACCGCTACCACCGCTTTCAG
GGAATGTTGCAGCAGCCATAAGGTATGAACCGTCTCGATCCAATCGGCCG
CCGCCCTTACCAGCGCCTTTATACTACCTGCTTCGTCGTCGTTCTTTCCT
TAAACTGCTTGTGCATCGTGTGCAATGCAGGGAGAGGGGTGCGAGTTCGA
GCCTCCAGAAGCCGAGGCGTTCGATGTTGAGGGTGCCGTGCCGTTGGAGG
TGAGCCACAAGTGTGCAGCGCGATCGGCAGTAGCCCGCATTTAGGAAGCG
GGCGGTGTTTGTCTCCCCGGAGCGTTGCTGCTGCAGGAGGCCTGGACGTT
GCGGGACTTGGGGGAGCTCATGGTTAGAGTGTCACTTTTCAAGGCTCGTC
GAGGGCGCTGCGCGTTTCGGTGAAGACCCCCAACGATTTTATTTTTTTTG
TGTTCGTGCTCTTCACCCCTGGCGGCGTTCACGTCCGTGTGTGTGCTCCC
AAGTGTAGCGAGGTCGTCGCGCGTGAGTAGAGGGACGGTTCGCAATCAAC
AAAGCGAAGATTTCGCCCCACGAATGCAGCAGCTCCTAAGCACTTCACTA
GCTCCGTAGTGTATCAGCCGGGATTTCGTCCGCGCGTACACCACACCCAA
TCTTGCGCCCGGCCCGCCCCTTCTACCTGGCCTTTGTCCCTCTGTCCCCC
CCCTCCGCGACATCGCCTTCGAAGGTGAAAGCCGGGACCCTGGTCCTCCT
CCACCACTCCCTCGTACACTACAGCGCGGCCAACACGTCGGAAAAGTCGA
GACACGCCTACTCGATCCACGTCGTCGAGGGGAAGGAGGGGTTCCGGTAC
CCCAAAGACAACTGGCTGCAGAGACCCGACGACGCCCCCTTTCAGGAACT
CCCGTAGAAGTCGATAAGAGCGGCGCATTCGATGGGCTGCGGCTGGGGGA
TGTGCGACGGGCCGGGGTTTGTCTTGTGGGTAGCGGCGGTGTCGAACCCA
TAGCAGTTGCGCTATGTTTGCGCTGAAATGGGCAAGACCGGCGATTCGCT
GCGGGCGTGTTCTTTTGACAGCCGTCGATCGCAGCACGGCTCGTGGCGGC
ATGGTCACTTTTTGGAATAGTTTTCGAACAGGCTAGCTCCCGAGTCCGTT
TTGAACGGTGCTTTCAAGACAAGAGTTTCGTGGAGCAGGCCCACATGCCC
CCCTGTGAGGGGTGCGTCTATCAAAACTGAGAGCACATAGCACCAAGTTC
GCATGATCGTGGTTCAGACGGTGACGCCGACTTGAGGTGAAGAAAAAGGA
TAAACTTGAGCCCTCCGTGCGCGCGTGGCGCCACCAACGCACCCGTCCTT
CGCCAACATGGAGGCGAAGTGCGGCATTTTATTGACCCCAACTTCAGAGT
GGACGCAAGCAGGCTGTTTTTTTATTTGTTTCCATTTGTTCTGGACGCCA
GCCTTCCCAACTTTCGTTGATGATGGGAGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1082:20313..25292+

>mRNA_P-lacustris_contig1082.697.1 ID=mRNA_P-lacustris_contig1082.697.1|Name=mRNA_P-lacustris_contig1082.697.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1896bp|location=Sequence derived from alignment at P-lacustris_contig1082:20313..25292+ (Pleurocladia lacustris SAG_25_93)
ATGTACAGGAAGATAATTTTTTTTCAATTCTTGAACGGTACCCTTGCTTC
AGTCATGAACGTACAGTTTTCCCATCATGCTGTTGTTGTTGCTGCTGCTG
TTGATGCTGTCGTGACCTTACAGACCGTTCAGACCTCTACCCAGTACCTC
CGCAACATAGGTACTCTTCAAGGGAAGACGAGCTTGAATATCAAAGCAAA
GCCTTTTTTTTCAGTTCGACACCTGTACCCTCTTCGCGATGAAAAATGGA
CGCCTGCTGCTGTGCGTCATATCGCCTATCGTTTACCGTGCATGATTGTT
TTTCAAGATACGTTTCTTTTGGGAGGCGGGTGCTTTCGACAACAAGGGGA
GTTCGTAAACGACCGGCTGAAGTGCATCAACAAGATGTACAGGAAGATAA
TTTTTTTTCAATTCTTGAACGGTACCCTTGCTTCAGTCATGAACGTACAG
TTTTCCCATCATGCTGTTGTTGTTGCTGCTGCTGTTGATGCTGTCGTGAC
CTTACAGACCGTTCAGACCTCTACCCAGTACCTCCGCAACATAGGTACTC
TTCAAGGGAAGACGAGCTTGAATATCAAAGCAAAGCCTTTTTTTTCAGTT
CGACACCTGTACCCTCTTCGCGATGAAAAATGGACGCCTGCTGCTGTGCG
TCATATCGCCTATCGTTTACCGTGCATGATTGTTTTTCAAGATACGTTTC
TTTTGGGAGGCGGGTGCTTTCGACAACAAGGGGAGTTCGTAAACGACCGG
CTGAAGTGCATCAACAAGATCGGACATGCACTTCACGACTTGGATCCCGT
CCTCAACAAATACAGCTACGAGAAGCGAGTCGGGCAGATCGGACATGCAC
TTCACGACTTGGATCCCGTCCTCAACAAATACAGCTACGAGAAGCGAGTC
GGGCAGGTCTCTCGCGACCTGGGACTCCACGCCCCTTTAGTGGTGCAGTC
CATGTACATCTTCAAGCAGCCCCGGATTGGCGGGGAGGTCACCCCGCACC
AGGACGGGGCGTTCCTCTACACGGTCTCTCGCGACCTGGGACTCCACGCC
CCTTTAGTGGTGCAGTCCATGTACATCTTCAAGCAGCCCCGGATTGGCGG
GGAGGTCACCCCGCACCAGGACGGGGCGTTCCTCTACACGGAGCCCCAGT
CTGTGGTAGGCTACTGGTGGGCGTTGGAGGACTGCACGGTGTCCAACGGA
TGCCTCTGGGCGGTGCCCGGCTCTCACAGTCGGGTGGTCAGGCGAAGGTT
CAAGCGATCGCCGACGGAGCCCCAGTCTGTGGTAGGCTACTGGTGGGCGT
TGGAGGACTGCACGGTGTCCAACGGATGCCTCTGGGCGGTGCCCGGCTCT
CACAGTCGGGTGGTCAGGCGAAGGTTCAAGCGATCGCCGACGGGAGAGGG
GTGCGAGTTCGAGCCTCCAGAAGCCGAGGCGTTCGATGTTGAGGGTGCCG
TGCCGTTGGAGGGAGAGGGGTGCGAGTTCGAGCCTCCAGAAGCCGAGGCG
TTCGATGTTGAGGGTGCCGTGCCGTTGGAGGTGAAAGCCGGGACCCTGGT
CCTCCTCCACCACTCCCTCGTACACTACAGCGCGGCCAACACGTCGGAAA
AGTCGAGACACGCCTACTCGATCCACGTCGTCGAGGGGAAGGAGGGGTTC
CGGTACCCCAAAGACAACTGGCTGCAGAGACCCGACGACGCCCCCTTTCA
GGAACTCCCGTAGGTGAAAGCCGGGACCCTGGTCCTCCTCCACCACTCCC
TCGTACACTACAGCGCGGCCAACACGTCGGAAAAGTCGAGACACGCCTAC
TCGATCCACGTCGTCGAGGGGAAGGAGGGGTTCCGGTACCCCAAAGACAA
CTGGCTGCAGAGACCCGACGACGCCCCCTTTCAGGAACTCCCGTAG
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