mRNA_P-lacustris_contig1081.694.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1081.694.1
Unique NamemRNA_P-lacustris_contig1081.694.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1081.694.1 vs. uniprot
Match: A0A6H5KTD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD3_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.640e-56
Identity = 93/145 (64.14%), Postives = 109/145 (75.17%), Query Frame = 1
Query:    4 SLNITGAKHANKAKGPLDWLCKNLSDGFADKPFYEPNALGVDLPVSIHQGVAPIYREGGTKRVIEYFTEELFSRLRYKPELLLVCYDRSELVPAIKGHEQLGRTEKIGGCTLTFDPESTTPIHDHDYQPWLRANNKAARDGIAAN 438
            S+  TGAKHANKA GP  W+ ++ +DGFAD PFY+ +A GVDLPVSIHQGV P Y E GT  VI+YF  +L S+     ELL+VCYDR ELVP IKG EQLGRTEK+G C+ TFDP+ST P+    Y PWLRA+ KAARDGIAAN
Sbjct:  185 SVRNTGAKHANKAAGPGKWVREHCADGFADDPFYDADAHGVDLPVSIHQGVHPEYLEKGTAGVIDYFKRQLLSKWLQPTELLMVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAAN 329          
BLAST of mRNA_P-lacustris_contig1081.694.1 vs. uniprot
Match: A0A6H5JAK2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK2_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 3.620e-55
Identity = 91/140 (65.00%), Postives = 105/140 (75.00%), Query Frame = 1
Query:   19 GAKHANKAKGPLDWLCKNLSDGFADKPFYEPNALGVDLPVSIHQGVAPIYREGGTKRVIEYFTEELFSRLRYKPELLLVCYDRSELVPAIKGHEQLGRTEKIGGCTLTFDPESTTPIHDHDYQPWLRANNKAARDGIAAN 438
            GAKHANKA GP  W+ ++ +DGFAD PFY+ +A GVDLPVSIHQGV P Y E GT  +I+YF  +L S      ELLLVCYDR ELVP IKG EQLGRTEK+G C+ TFDP+ST P+    Y PWLRA+ KAARDGIAAN
Sbjct:  244 GAKHANKAAGPGKWVREHCADGFADDPFYDADAHGVDLPVSIHQGVHPEYLEKGTAGIIDYFKRQLLSTWLQSTELLLVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAAN 383          
BLAST of mRNA_P-lacustris_contig1081.694.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 5.420e-55
Identity = 92/145 (63.45%), Postives = 109/145 (75.17%), Query Frame = 1
Query:    4 SLNITGAKHANKAKGPLDWLCKNLSDGFADKPFYEPNALGVDLPVSIHQGVAPIYREGGTKRVIEYFTEELFSRLRYKPELLLVCYDRSELVPAIKGHEQLGRTEKIGGCTLTFDPESTTPIHDHDYQPWLRANNKAARDGIAAN 438
            S+  TGAKHANKA GP  W+ ++ +DGFAD PFY+ +A GVDLPVSIHQGV P Y E GT  +I+YF  +L S+     ELL+VCYDR ELVP IKG EQLGRTEK+G C+ TFDP+ST P+    Y PWLRA+ KAARDGIAAN
Sbjct:  328 SVRNTGAKHANKAAGPGKWVREHCADGFADDPFYDADAHGVDLPVSIHQGVHPEYLEKGTAGIIDYFKRQLLSKWLQSTELLMVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAAN 472          
BLAST of mRNA_P-lacustris_contig1081.694.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 7.740e-54
Identity = 90/140 (64.29%), Postives = 106/140 (75.71%), Query Frame = 1
Query:   19 GAKHANKAKGPLDWLCKNLSDGFADKPFYEPNALGVDLPVSIHQGVAPIYREGGTKRVIEYFTEELFSRLRYKPELLLVCYDRSELVPAIKGHEQLGRTEKIGGCTLTFDPESTTPIHDHDYQPWLRANNKAARDGIAAN 438
            GAKHANKA GP  W+ ++ +DGFAD PFY+ +A GVDLPVSIHQGV P Y E GT  +I+YF  +L S+     ELL+VCYDR ELVP IKG EQLGRTEK+G C+ TFDP+ST P+    Y PWLRA+ KAARDGIAAN
Sbjct: 1352 GAKHANKAAGPGKWVREHCADGFADDPFYDADAHGVDLPVSIHQGVHPEYLEKGTAGIIDYFKRQLLSKWLQSTELLMVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAAN 1491          
BLAST of mRNA_P-lacustris_contig1081.694.1 vs. uniprot
Match: A0A6H5JZK8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZK8_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.330e-53
Identity = 86/143 (60.14%), Postives = 100/143 (69.93%), Query Frame = 1
Query:   10 NITG-AKHANKAKGPLDWLCKNLSDGFADKPFYEPNALGVDLPVSIHQGVAPIYREGGTKRVIEYFTEELFSRLRYKPELLLVCYDRSELVPAIKGHEQLGRTEKIGGCTLTFDPESTTPIHDHDYQPWLRANNKAARDGIAA 435
            N+TG AKHANKA GP  W+ ++ +DGFAD  FY+ +A G+DLP SIHQGV P Y E GT   I+YF  +L        ELLLVCYDR ELVP IKG EQLGRTEK G C+ T DP+ST  +    Y PWLRA+ KAARDGIAA
Sbjct:   34 NVTGGAKHANKAAGPRKWVREHCADGFADDSFYDADAHGMDLPASIHQGVHPEYLENGTAGTIDYFKRQLLPNWLQSTELLLVCYDRQELVPVIKGQEQLGRTEKFGECSRTSDPKSTDLVPSLQYGPWLRADGKAARDGIAA 176          
BLAST of mRNA_P-lacustris_contig1081.694.1 vs. uniprot
Match: A0A6H5KXZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ6_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 5.470e-53
Identity = 84/139 (60.43%), Postives = 102/139 (73.38%), Query Frame = 1
Query:   19 GAKHANKAKGPLDWLCKNLSDGFADKPFYEPNALGVDLPVSIHQGVAPIYREGGTKRVIEYFTEELFSRLRYKPELLLVCYDRSELVPAIKGHEQLGRTEKIGGCTLTFDPESTTPIHDHDYQPWLRANNKAARDGIAA 435
            GAKHA KA GP  W+ ++ +DGFA+ P Y+ +A GVDLPVSIHQG+ P Y E GT  +I+YF  +L S+     E LLVCYDR +LVP IKG EQLGRTEK+G C+ TFDP+ST P+    Y PWLRA+ KAARDGIAA
Sbjct:   38 GAKHATKAAGPGKWVREHCADGFAEDPSYDADARGVDLPVSIHQGMRPEYLEKGTAGIIDYFKRQLLSKWLQSTEPLLVCYDRQDLVPVIKGQEQLGRTEKLGVCSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAA 176          
BLAST of mRNA_P-lacustris_contig1081.694.1 vs. uniprot
Match: A0A6H5JHH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH4_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 5.430e-52
Identity = 86/139 (61.87%), Postives = 103/139 (74.10%), Query Frame = 1
Query:   19 GAKHANKAKGPLDWLCKNLSDGFADKPFYEPNALGVDLPVSIHQGVAPIYREGGTKRVIEYFTEELFSRLRYKPELLLVCYDRSELVPAIKGHEQLGRTEKIGGCTLTFDPESTTPIHDHDYQPWLRANNKAARDGIAA 435
            G KHA+KA GP  W+ ++ +DGFAD PF++ +A GVDLPVSIHQGV P Y E GT  +I+YF  +L S+     EL LVCYDR ELVP IKG EQLGRTEK+G C+ TFDP+ST P+    Y PWLRA+ KAARDGIAA
Sbjct:    7 GVKHASKAAGPRKWVREHCADGFADDPFFDADAHGVDLPVSIHQGVHPEYLEKGTAGIIDYFKRQLLSKWLQSTELFLVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDPKSTGPVPSLQYGPWLRADGKAARDGIAA 145          
BLAST of mRNA_P-lacustris_contig1081.694.1 vs. uniprot
Match: A0A6H5JUY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY6_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.190e-51
Identity = 91/145 (62.76%), Postives = 103/145 (71.03%), Query Frame = 1
Query:    7 LNITG-AKHANKAKGPLDWLCKNLSDGFADKPFYEPNALGVDLPVSIHQGVAPIYREGGTKRVIEYFTEELFSRLRYKPELLLVCYDRSELVPAIKGHEQLGRTEKIGGCTLTFDPESTTPIHDHDYQPWLRANNKAARDGIAAN 438
            +N TG AKHANK+ GP  WL  + SD   D+PFY   A GVDLPVSIHQGV     EGG   VI YF  EL SR R + +LLLVCYDR++LVPAIKG EQ GRT+KIGGCTL+F+P ST PI    YQ WLR N KAARD IAA+
Sbjct:   41 VNATGGAKHANKSAGPTKWLQDHSSDAVTDEPFYTACAHGVDLPVSIHQGVRQRDLEGGAHGVINYFVSELDSRWRMEADLLLVCYDRAQLVPAIKGREQSGRTDKIGGCTLSFEPTSTDPIPPSQYQSWLRDNQKAARDCIAAH 185          
BLAST of mRNA_P-lacustris_contig1081.694.1 vs. uniprot
Match: A0A6H5JT24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT24_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.260e-51
Identity = 87/143 (60.84%), Postives = 105/143 (73.43%), Query Frame = 1
Query:   10 NITGAKHANKAKGPLDWLCKNLSDGFADKPFYEPNALGVDLPVSIHQGVAPIYREGGTKRVIEYFTEELFSRLRYKPELLLVCYDRSELVPAIKGHEQLGRTEKIGGCTLTFDPESTTPIHDHDYQPWLRANNKAARDGIAAN 438
            N TGAKHANKA  PL W+ ++ +DGFA  PFY  +A GVDLPVSIHQGV P Y E GT  +I+YF ++ FS+     EL +VCYDR ELVPAI+GHEQLGRTE +G C+ TFDP+ST P+    +  WLR + KAARDGIAAN
Sbjct:   24 NATGAKHANKAADPLKWVREHCADGFAVDPFYGADAHGVDLPVSIHQGVHPEYLEKGTAGIIDYFKKQFFSKWLKSTELFVVCYDRQELVPAIRGHEQLGRTETLGECSRTFDPKSTDPVPLLHHGSWLRVDGKAARDGIAAN 166          
BLAST of mRNA_P-lacustris_contig1081.694.1 vs. uniprot
Match: A0A6H5KG39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG39_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 8.300e-51
Identity = 89/140 (63.57%), Postives = 100/140 (71.43%), Query Frame = 1
Query:   19 GAKHANKAKGPLDWLCKNLSDGFADKPFYEPNALGVDLPVSIHQGVAPIYREGGTKRVIEYFTEELFSRLRYKPELLLVCYDRSELVPAIKGHEQLGRTEKIGGCTLTFDPESTTPIHDHDYQPWLRANNKAARDGIAAN 438
            GAKHANK+ GP  WL  + S+  AD+PFY   A GVDLPVSIHQGV     EGG   VI YF  EL SR R + +LLLVCYDR++LVPAIKG EQ GRT+KIGGCTL+FDP S  PI    YQ WLR N KAARDG AA+
Sbjct:   44 GAKHANKSAGPTKWLQDHSSNAVADEPFYTACAHGVDLPVSIHQGVRQRDLEGGAHGVINYFVSELDSRWRMEADLLLVCYDRAQLVPAIKGREQSGRTDKIGGCTLSFDPTSMDPIPQSQYQSWLRDNQKAARDGFAAH 183          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1081.694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTD3_9PHAE1.640e-5664.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAK2_9PHAE3.620e-5565.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KTG2_9PHAE5.420e-5563.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE7.740e-5464.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZK8_9PHAE3.330e-5360.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KXZ6_9PHAE5.470e-5360.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHH4_9PHAE5.430e-5261.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUY6_9PHAE1.190e-5162.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT24_9PHAE1.260e-5160.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG39_9PHAE8.300e-5163.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1081contigP-lacustris_contig1081:27977..28414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue1.1e-29
Seed eggNOG ortholog2880.D7FIA9
Hectar predicted targeting categoryother localisation
EggNOG OGs2D5KK@1,2SYVY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size440
Cds size438
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.2467835-CDS-P-lacustris_contig1081:27976..284141622815358.2467835-CDS-P-lacustris_contig1081:27976..28414Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1081 27977..28414 +
1693493498.0279186-CDS-P-lacustris_contig1081:27976..284141693493498.0279186-CDS-P-lacustris_contig1081:27976..28414Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1081 27977..28414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1081.694.1prot_P-lacustris_contig1081.694.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1081 27977..28414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1081.694.1

>prot_P-lacustris_contig1081.694.1 ID=prot_P-lacustris_contig1081.694.1|Name=mRNA_P-lacustris_contig1081.694.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=146bp
MSLNITGAKHANKAKGPLDWLCKNLSDGFADKPFYEPNALGVDLPVSIHQ
GVAPIYREGGTKRVIEYFTEELFSRLRYKPELLLVCYDRSELVPAIKGHE
QLGRTEKIGGCTLTFDPESTTPIHDHDYQPWLRANNKAARDGIAAN
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mRNA from alignment at P-lacustris_contig1081:27977..28414+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1081.694.1 ID=mRNA_P-lacustris_contig1081.694.1|Name=mRNA_P-lacustris_contig1081.694.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=438bp|location=Sequence derived from alignment at P-lacustris_contig1081:27977..28414+ (Pleurocladia lacustris SAG_25_93)
ATGTCCTTGAACATTACAGGAGCCAAACATGCCAACAAAGCGAAGGGCCC GCTGGACTGGCTTTGCAAAAATCTCAGTGACGGATTCGCGGACAAGCCCT TCTACGAGCCTAACGCGCTTGGCGTCGATCTGCCAGTGTCTATCCATCAG GGAGTGGCCCCCATATACCGGGAGGGGGGAACGAAGCGGGTAATCGAGTA CTTCACGGAGGAGCTGTTTTCGAGGTTGAGGTACAAGCCGGAGCTGCTCT TGGTGTGCTACGACCGGTCCGAGCTTGTACCCGCAATCAAAGGGCACGAG CAGCTCGGGAGGACAGAGAAAATTGGAGGGTGCACGCTGACTTTCGACCC GGAGTCAACGACCCCGATTCACGACCACGACTATCAGCCATGGCTTCGAG CCAACAACAAGGCGGCGCGGGACGGAATCGCCGCCAAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1081:27977..28414+

>mRNA_P-lacustris_contig1081.694.1 ID=mRNA_P-lacustris_contig1081.694.1|Name=mRNA_P-lacustris_contig1081.694.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=876bp|location=Sequence derived from alignment at P-lacustris_contig1081:27977..28414+ (Pleurocladia lacustris SAG_25_93)
ATGTCCTTGAACATTACAGGAGCCAAACATGCCAACAAAGCGAAGGGCCC
GCTGGACTGGCTTTGCAAAAATCTCAGTGACGGATTCGCGGACAAGCCCT
TCTACGAGCCTAACGCGCTTGGCGTCGATCTGCCAGTGTCTATCCATCAG
GGAGTGGCCCCCATATACCGGGAGGGGGGAACGAAGCGGGTAATCGAGTA
CTTCACGGAGGAGCTGTTTTCGAGGTTGAGGTACAAGCCGGAGCTGCTCT
TGGTGTGCTACGACCGGTCCGAGCTTGTACCCGCAATCAAAGGGCACGAG
CAGCTCGGGAGGACAGAGAAAATTGGAGGGTGCACGCTGACTTTCGACCC
GGAGTCAACGACCCCGATTCACGACCACGACTATCAGCCATGGCTTCGAG
CCAACAACAAGGCGGCGCGGGACGGAATCGCCGCCAACATGTCCTTGAAC
ATTACAGGAGCCAAACATGCCAACAAAGCGAAGGGCCCGCTGGACTGGCT
TTGCAAAAATCTCAGTGACGGATTCGCGGACAAGCCCTTCTACGAGCCTA
ACGCGCTTGGCGTCGATCTGCCAGTGTCTATCCATCAGGGAGTGGCCCCC
ATATACCGGGAGGGGGGAACGAAGCGGGTAATCGAGTACTTCACGGAGGA
GCTGTTTTCGAGGTTGAGGTACAAGCCGGAGCTGCTCTTGGTGTGCTACG
ACCGGTCCGAGCTTGTACCCGCAATCAAAGGGCACGAGCAGCTCGGGAGG
ACAGAGAAAATTGGAGGGTGCACGCTGACTTTCGACCCGGAGTCAACGAC
CCCGATTCACGACCACGACTATCAGCCATGGCTTCGAGCCAACAACAAGG
CGGCGCGGGACGGAATCGCCGCCAAC
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