mRNA_P-lacustris_contig1080.690.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1080.690.1
Unique NamemRNA_P-lacustris_contig1080.690.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1080.690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1080contigP-lacustris_contig1080:45227..45619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Exons1
Model size395
Cds size393
Stop0
Hectar predicted targeting categoryother localisation
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815357.621478-CDS-P-lacustris_contig1080:45226..456191622815357.621478-CDS-P-lacustris_contig1080:45226..45619Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1080 45227..45619 +
1693493497.710808-CDS-P-lacustris_contig1080:45226..456191693493497.710808-CDS-P-lacustris_contig1080:45226..45619Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1080 45227..45619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1080.690.1prot_P-lacustris_contig1080.690.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1080 45227..45619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1080.690.1

>prot_P-lacustris_contig1080.690.1 ID=prot_P-lacustris_contig1080.690.1|Name=mRNA_P-lacustris_contig1080.690.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=131bp
MHFNFKWFLHRLGIDKTNFTRHCCIGGRRLGTSKMVHDTRWPRGIRTRRS
LSRWWRYKRGQRPLSAQGPEVRRAGCKGVRIKRFDACLPSSRQGDPIILS
PAKNERGLLRARPLVRLGAWSPGAWVQQYRH
back to top

mRNA from alignment at P-lacustris_contig1080:45227..45619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1080.690.1 ID=mRNA_P-lacustris_contig1080.690.1|Name=mRNA_P-lacustris_contig1080.690.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=393bp|location=Sequence derived from alignment at P-lacustris_contig1080:45227..45619+ (Pleurocladia lacustris SAG_25_93)
ATGCACTTTAATTTCAAGTGGTTCTTGCACAGGTTGGGGATCGACAAAAC
CAATTTCACGCGGCACTGCTGTATAGGAGGACGCCGCCTCGGCACGAGCA
AAATGGTGCATGACACGCGCTGGCCTAGGGGTATCCGTACGCGGCGCAGT
CTGTCGCGGTGGTGGCGCTACAAAAGGGGCCAACGACCGTTGTCCGCGCA
GGGACCTGAGGTCAGAAGGGCGGGTTGCAAAGGCGTGCGAATAAAAAGAT
TCGATGCCTGCCTCCCGAGCAGCAGGCAAGGCGATCCCATCATCTTGAGC
CCGGCCAAAAACGAGAGGGGGCTGCTGCGAGCACGCCCGCTCGTGCGTCT
CGGGGCGTGGAGTCCAGGCGCCTGGGTACAGCAGTACCGTCAT
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1080:45227..45619+

>mRNA_P-lacustris_contig1080.690.1 ID=mRNA_P-lacustris_contig1080.690.1|Name=mRNA_P-lacustris_contig1080.690.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=786bp|location=Sequence derived from alignment at P-lacustris_contig1080:45227..45619+ (Pleurocladia lacustris SAG_25_93)
ATGCACTTTAATTTCAAGTGGTTCTTGCACAGGTTGGGGATCGACAAAAC
CAATTTCACGCGGCACTGCTGTATAGGAGGACGCCGCCTCGGCACGAGCA
AAATGGTGCATGACACGCGCTGGCCTAGGGGTATCCGTACGCGGCGCAGT
CTGTCGCGGTGGTGGCGCTACAAAAGGGGCCAACGACCGTTGTCCGCGCA
GGGACCTGAGGTCAGAAGGGCGGGTTGCAAAGGCGTGCGAATAAAAAGAT
TCGATGCCTGCCTCCCGAGCAGCAGGCAAGGCGATCCCATCATCTTGAGC
CCGGCCAAAAACGAGAGGGGGCTGCTGCGAGCACGCCCGCTCGTGCGTCT
CGGGGCGTGGAGTCCAGGCGCCTGGGTACAGCAGTACCGTCATATGCACT
TTAATTTCAAGTGGTTCTTGCACAGGTTGGGGATCGACAAAACCAATTTC
ACGCGGCACTGCTGTATAGGAGGACGCCGCCTCGGCACGAGCAAAATGGT
GCATGACACGCGCTGGCCTAGGGGTATCCGTACGCGGCGCAGTCTGTCGC
GGTGGTGGCGCTACAAAAGGGGCCAACGACCGTTGTCCGCGCAGGGACCT
GAGGTCAGAAGGGCGGGTTGCAAAGGCGTGCGAATAAAAAGATTCGATGC
CTGCCTCCCGAGCAGCAGGCAAGGCGATCCCATCATCTTGAGCCCGGCCA
AAAACGAGAGGGGGCTGCTGCGAGCACGCCCGCTCGTGCGTCTCGGGGCG
TGGAGTCCAGGCGCCTGGGTACAGCAGTACCGTCAT
back to top