mRNA_P-lacustris_contig1080.688.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1080.688.1
Unique NamemRNA_P-lacustris_contig1080.688.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1080.688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1080contigP-lacustris_contig1080:7251..7687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size279
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1080.688.1prot_P-lacustris_contig1080.688.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1080 7366..7664 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815357.5419188-UTR-P-lacustris_contig1080:7250..73651622815357.5419188-UTR-P-lacustris_contig1080:7250..7365Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1080 7251..7365 +
1693493497.6524324-UTR-P-lacustris_contig1080:7250..73651693493497.6524324-UTR-P-lacustris_contig1080:7250..7365Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1080 7251..7365 +
1622815357.5844383-UTR-P-lacustris_contig1080:7664..76871622815357.5844383-UTR-P-lacustris_contig1080:7664..7687Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1080 7665..7687 +
1693493497.696306-UTR-P-lacustris_contig1080:7664..76871693493497.696306-UTR-P-lacustris_contig1080:7664..7687Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1080 7665..7687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815357.5608923-CDS-P-lacustris_contig1080:7365..74731622815357.5608923-CDS-P-lacustris_contig1080:7365..7473Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1080 7366..7473 +
1693493497.6731641-CDS-P-lacustris_contig1080:7365..74731693493497.6731641-CDS-P-lacustris_contig1080:7365..7473Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1080 7366..7473 +
1622815357.5720932-CDS-P-lacustris_contig1080:7631..76641622815357.5720932-CDS-P-lacustris_contig1080:7631..7664Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1080 7632..7664 +
1693493497.6850653-CDS-P-lacustris_contig1080:7631..76641693493497.6850653-CDS-P-lacustris_contig1080:7631..7664Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1080 7632..7664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1080.688.1

>prot_P-lacustris_contig1080.688.1 ID=prot_P-lacustris_contig1080.688.1|Name=mRNA_P-lacustris_contig1080.688.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=47bp
MSVKSFRCNISNATRLGVGTLHVVEISSIHYRSRGEVSCVEYGSLE*
back to top

mRNA from alignment at P-lacustris_contig1080:7251..7687+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1080.688.1 ID=mRNA_P-lacustris_contig1080.688.1|Name=mRNA_P-lacustris_contig1080.688.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=437bp|location=Sequence derived from alignment at P-lacustris_contig1080:7251..7687+ (Pleurocladia lacustris SAG_25_93)
GAAAAAAGTCCTCACCGTCCTGAGTGCCCGTATTCCATACAAGATACCAC
ACCCCCTGGCCCGATTTTCATGGCTCGATTTCTCCACACCAGTGTTGGTG
CCAACACCGTGTGATATGTCCGTGAAGAGCTTTCGATGTAACATTTCCAA
TGCTACCCGTTTGGGCGTTGGCACACTCCATGTTGTCGAGATATCGAGCA
TTCACTATCGGTCAAGGGGTGAGGTATCTTGCTCGATTTCTCCACACCAG
TGTTGGTGCCAACACCGTGTGATATGTCCGTGAAGAGCTTTCGATGTAAC
ATTTCCAATGCTACCCGTTTGGGCGTTGGCACACTCCATGTTGTCGAGAT
ATCGAGCATTCACTATCGGTCAAGGGGTGAGGTATCTTGTGTGGAATACG
GTAGTCTTGAGTAAGTTAGTAGGTCGTGAGAGCATGG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1080:7251..7687+

>mRNA_P-lacustris_contig1080.688.1 ID=mRNA_P-lacustris_contig1080.688.1|Name=mRNA_P-lacustris_contig1080.688.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=282bp|location=Sequence derived from alignment at P-lacustris_contig1080:7251..7687+ (Pleurocladia lacustris SAG_25_93)
ATGTCCGTGAAGAGCTTTCGATGTAACATTTCCAATGCTACCCGTTTGGG
CGTTGGCACACTCCATGTTGTCGAGATATCGAGCATTCACTATCGGTCAA
GGGGTGAGATGTCCGTGAAGAGCTTTCGATGTAACATTTCCAATGCTACC
CGTTTGGGCGTTGGCACACTCCATGTTGTCGAGATATCGAGCATTCACTA
TCGGTCAAGGGGTGAGGTATCTTGTGTGGAATACGGTAGTCTTGAGTAAG
TATCTTGTGTGGAATACGGTAGTCTTGAGTAA
back to top