mRNA_P-lacustris_contig108.686.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig108.686.1 vs. uniprot
Match: A0A6H5KWI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWI4_9PHAE) HSP 1 Score: 449 bits (1155), Expect = 3.950e-140 Identity = 392/687 (57.06%), Postives = 438/687 (63.76%), Query Frame = 3
Query: 165 PWKEAFLCPVAVQRNGAPLFGGGLTTGKAQLSAVTRGVGSM-AMVDDGDGMLD-ATADDPKATSRSSSRSGAPTSRAHVKGPFRRAQSFLGRRAGFAAAMSALVSAGAPGSAEALFGRG--KAPQMPSAPAIEQRLENAAGELTETAQEIESVLEEAGEAXXXXXXXIGEALDGSEAP-AGSEGG--IVGVTTTTAAAEGVEKTGSA-REVSTVGMVKDLVVENKEVVAVVVAGVVGSRYLLVQSGGKPGRVGRGRRRRGRESGD-APKSPLAGIGQPRVSPEVAAADLKKRAESLKSANFDLDLDLFGDAVSDLPTRPPPPTPXXXXXXXXXXDAMKGVVAAAAISAAAGAETETAEVESSAEXXXXXXXXXXXXXXXXXXXXXXXXSTLEPTPAAVAETPPPSTS---YSMKPAKPKKKGKPILNLFKRDTGPQRATTMEEALSAE----------------------------------------------GERANTASMTAALNELMQYADLSLERGAHVVADVVNAMVVKLTDAAVTSKDDASMATASDALLKYMDAAGALFVALCPGIELDPQIKYNGTFKRGKLEKVFEAAAKNTLKNMGDTAQMVSLDRLQDLFSIKKSKADSITQKIMMXXXXXXXXXXXXXXXDAEGLEKMMAAMGAMDGMGPXXXXXXXMGAGRTP 2051
P EAFL P AVQR+GA G L + + + TRG+GSM A V++G MLD A+ D+ + +RS GP R +S GR+A AAA+SALVSAGAPGSAEALFGRG AP+MPS PA+EQ+LE A GE+ E EI S +++ XXXXXXX EAL+G E P AGSEGG + G+ TTT A E E G A VSTVG+VKDLVVENKEVVAVVVAGV+GSRYLLVQ GGK APKSPLAGIGQPRVSPEVAAADLKKRA+SLKSANFD+DLDLFGDAV+DLP RPP XXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX YS+KP K K+K PIL+LFKRDTGPQR+TTM+EALS E G +A AS +AL ELM+ A LSLE+GA VVADVVNAMVVKLTDAAV+SK S A AS+ALLKYMD AGALFV LCPGI LDPQIKYNGT+KRGKLEKVFEAAAK+TLK+MGD QM+SLDRLQDLFSIKKSKADSITQKIMM DAEGLEKMMAAMG M+G XXXXX GAGR+P
Sbjct: 30 PGGEAFLHPAAVQRHGAAASGKML---QQRPAVKTRGIGSMTAGVEEG--MLDVASRDENSSVTRS------------TPGPLLRVRSLFGRKAATAAAVSALVSAGAPGSAEALFGRGGRSAPEMPSVPALEQQLETAVGEVVEGVGEIASAVDKXXXXXXXXXXXXEEALEGLETPEAGSEGGDAVGGLVTTTPATE--EDQGRAVGGVSTVGIVKDLVVENKEVVAVVVAGVIGSRYLLVQRGGKXXXXXXXXXXXXXXXXXXAPKSPLAGIGQPRVSPEVAAADLKKRADSLKSANFDVDLDLFGDAVADLPARPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSIKPEKSKRK--PILSLFKRDTGPQRSTTMQEALSDESPNVADFRRGLAAVLAESAPKGEFDVEEPTLLAEATIVPEDFEGEAGVKAAAASRMSALKELMETAGLSLEQGAEVVADVVNAMVVKLTDAAVSSKGVDSTAAASNALLKYMDEAGALFVTLCPGIALDPQIKYNGTYKRGKLEKVFEAAAKSTLKSMGDEGQMMSLDRLQDLFSIKKSKADSITQKIMMDLMMKMMSEGGGEDGDAEGLEKMMAAMGGMEGX----XXXXXXGAGRSP 691
BLAST of mRNA_P-lacustris_contig108.686.1 vs. uniprot
Match: A0A835Z1E0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1E0_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.090e-16 Identity = 82/235 (34.89%), Postives = 120/235 (51.06%), Query Frame = 3
Query: 1314 PTPAAVAETPPPSTSYSMK-PAKPKKK-GKPILNLFKRDTGPQRATTMEEALSAE----------------------------------GERANTASMTAALNELMQYADLSLERGAHVVADVVNAMVVKLTDAAVTS-KDDASMATASDALLKYMDAAGALFVALCPGIELDPQIKYNGTFKRGKLEKVFEAAAKNTLKNMGDTAQMVSL-DRLQDLFSIKKSKADSITQKIMM 1904
P P A + PPS + P PKKK G + LFK+ R TT+ +A+SA+ GE + A L EL+ + + + A +ADVVNAMVV LTDAAV + KD+ A LL YMD AG F A+CPG+ LDP ++YNG K+ +LE+++E + + + +A M + +RL+D+ +IK+SKA S+ QK++M
Sbjct: 217 PAPQQAAVSAPPSAMEAQAAPEPPKKKLGLGLGGLFKKGAASNRPTTIGDAISAQEGGGLEGFSQALAGYLSHFAPPGSFAPDPTFLRDGEL-DRAGAEGTLLELVSSSGATSLQVADAIADVVNAMVVGLTDAAVAAIKDEDRCRQALSDLLLYMDNAGGTFAAVCPGVALDPPLRYNGAAKKRQLEELYENFTRAMVTDQ--SADMSARQERLRDMLNIKESKARSLEQKVLM 448
BLAST of mRNA_P-lacustris_contig108.686.1 vs. uniprot
Match: H6WBA5_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA5_VAULI) HSP 1 Score: 75.9 bits (185), Expect = 1.390e-10 Identity = 53/173 (30.64%), Postives = 88/173 (50.87%), Query Frame = 3
Query: 1506 ALNELMQYADLSLERG---AHVVADVVNAMVVKLTDAAVTS--KDDASMATASDALLKYMDAAGALFVALCPGIELDPQIKYNGTFKRGKLEKVFEAAAKNTLKNMGDTAQMVSLDRLQDLFSIKKSKADSITQKIMMXXXXXXXXXXXXXXXDAEGLEKMMAAMGAMDGMGP 2009
A+N L+ +D S E A +A + N M+ +L DAAV + K + A L+++M +G++F A+CPGI LDP ++YNG K+ +LE+++ A+ ++ + M ++DL IK+ KA +I QK MM E + ++ +GA G P
Sbjct: 166 AINTLISLSDSSKENSNSVAEAIACIANPMINELVDAAVAANQKSPPACEEALMGLVRFMKVSGSVFEAVCPGIVLDPPLRYNGGSKKKQLEEIY-ASLSASISSENSEELMSFQKEIRDLLGIKEFKAKAIEQKAMMDALQNMVKDGGGDGSSQEQMAALLQNIGANGGPEP 337
BLAST of mRNA_P-lacustris_contig108.686.1 vs. uniprot
Match: A0A4D9CXM2_9STRA (ABC2_membrane domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXM2_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.990e-5 Identity = 50/165 (30.30%), Postives = 69/165 (41.82%), Query Frame = 3
Query: 1536 LSLERGAHVVADVVNAMVVKLTDAAVTSK--DDASMATASDALLKYMDAAGALFVALCPGIELDPQIKYNGTFKRGKLEKVFEAAAKNTLKNMGDTAQMVSLDRLQDLFSIKKSKADSITQKIMMXXXXXXXXXXXXXXXDAEG-------LEKMMAAMGAMDGM 2003
LS E A A VVN VVK+ D V S ++A DALLK+M+ AG +F+ + P + + Y G KLE ++ + L R+Q+LF I KA+ I+ KI+ EG LEKM + G M M
Sbjct: 723 LSPENAADAFAQVVNLAVVKIVDDLVPSLKGNEALTLNGVDALLKFMEKAGDIFMHVAPNVTEISPVLYQGQAPPRKLEMIYSRYCQYALVEDASGQGNDKAVRIQELFDISNKKAEKISSKILSSQDNMMKMLEKQFGAGGEGMGEMGEELEKMFESFGGMPDM 887 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig108.686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig108.686.1 >prot_P-lacustris_contig108.686.1 ID=prot_P-lacustris_contig108.686.1|Name=mRNA_P-lacustris_contig108.686.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=635bp MAMVDDGDGMLDATADDPKATSRSSSRSGAPTSRAHVKGPFRRAQSFLGRback to top mRNA from alignment at P-lacustris_contig108:213870..239397- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig108.686.1 ID=mRNA_P-lacustris_contig108.686.1|Name=mRNA_P-lacustris_contig108.686.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=25528bp|location=Sequence derived from alignment at P-lacustris_contig108:213870..239397- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig108:213870..239397- >mRNA_P-lacustris_contig108.686.1 ID=mRNA_P-lacustris_contig108.686.1|Name=mRNA_P-lacustris_contig108.686.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3810bp|location=Sequence derived from alignment at P-lacustris_contig108:213870..239397- (Pleurocladia lacustris SAG_25_93)back to top |