mRNA_P-lacustris_contig108.677.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig108.677.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI) HSP 1 Score: 1058 bits (2735), Expect = 0.000e+0 Identity = 799/1483 (53.88%), Postives = 890/1483 (60.01%), Query Frame = 1
Query: 2278 DQWYDHYDAVQRVRDTEASAW-GGVPVLPGEVAAMRRQRLVKAAEPLNQRGLTRFQLSQMLEEKTKAFKDVRGRLRQVLERKPAYCPLSSRPGGARPCGTSFWT------RCASSPPTTMRSAS*HGTSCEAWPSECSLPGGSSARGGQRRETDESLMQGKHSAATSTSSPPRPRALRPSPFRTALPRVEPEEAGRARSCLLA*LLXXXXXXXXXXXXXXXRDPGMREIIWSQWR*RCRS*-VGSGLRWSSPWQARGHSRGRHSQQTR*RRPL*RWSLRTP*VASATAAVTGPQGTPSFPLATSAGHQTRGEWPSICSPIRLRRCRGSEG*PVAVL-------------------GVLCDEQGTGKTVTAAASVALLAACRALVESERVTVFLAQERERTRLAEGAVKGESEVCTRGASGSSAAKTASGXXXXXXXXXXXXXSSKGMPGRGTLGVRPRPGRLAPPPQLVVVPSWAMARWHMELAQACPRLVIQVWEDWTDQERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKGRLPSTARHSSADVVLCSLERLAEVDGGVSVDVRLARSVRWTQEYVIRCEMTEPQAKVYSAVARSPEVVAALSGE----PAPSAAGAVSNGXXXXXXXXATAGSQGHARTRENGTVVEEALLALRRAALTGALEKPPPP---------GASISTGQAEAQKEEFWRGHIKDLELSVPERLEKYSGKLAKLGRAARRLIAAGKKVLVLGALPDSLLLLHQYLGEIDVPHECWAANDEMFPTDGSTQAEKAGSLSANTAA-----------------------------VAAPVAPTCNGSPLSTAAAPDMASLLSAHHRPPGSF-----FLGGEVLLPPKPAHERLWSGVQGPLWRFRCSSRTPVLLAPPSAVIEAVAGGSGLCPNGE--RKASKSVRKGCLLGLGPIDAVLIFDEDPTTTTSPTATS---------SRTALIAALKSLLALPLCARSFSPSSRAACSSSGAAAGKGADGGGVAV---GRADG------------ERVVTVVRFVTEGTIEEALEEGGTAAWTSSLGVRFEGTAMSTLYSQGDDTINPNPTLKNRSSFCWGFHFQVPEAVSLSGTKRKASDDGDG--------------NWSDCLPPLRKTSSWSPVRVEDILVEEMVQLNPDDFDTGRGSFDTDETRVFARLAEEGHPVPPPLLSYAVDATLAATPGRSFTERVRDLHLLGISPDPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLGCSLSYVDRLPSNRNKKLKKALSPRDSARRDGDQFGVGKKTKTIVEEWTKTEDSLLVNAVQQFGENWVLVAFSINKYPILRGRMRSGSQCKARHSNLVALGAA-HRSPRGSNSSNRPLSVLSVRLPETYRGAAILPDQPPALTLAMRSRVPLVPMASAAARQMFAARFSALVKAVQKKPIPPPIPGCDNPD 6381
DQWY+HY AV+RVRD EAS GG+P+LPGEVAAMRR RLVKAAEP NQRGLTRFQLSQMLEEKTKAFKDVR RLR VLERKP P P + + W R ++ R + H L G ++ RRE L +G+ P+ R R + A+ R A XXXXXXXXXXXXXXX+ P + WS + VG G Q T + L SL ++ + G + AG++ S L R S G V +L GVLCD++GTGKTVTAAA+VA++AACR++VE+ER +FLAQE++R L+E VKGE+E + ASG XXXXXXXXXXXXX P +GTL +RPRPG LAPPPQLVVVPSWAMARWHMELAQACPRLVI+VWE+W QE XXXXXXXXXXXXXXXXXXXXX K RLP TAR SSADVVLCSLERLAEVDGG RC MT+PQAKVYSAVARS EVVAALSGE P P+ A SNG XXXX GA +S GQAEAQKEEFWRGH+KDLELSVPERLEKYSGKLAKLGRA RL AAGKKVLVLGALPD+ LL+HQYL E DVPHECWA N EMFP ++ + + A TAA A V P +P +A L SAHH P GSF F V PPKPAHERLWSGVQGPLWRFRCS RTPVLLAPPSA++EAVAGGSGLCPNGE R SVR+G LLGLGPIDAVLIFDE P TT TA SR AL AAL+SLL LP CAR S + RA S A GGG A GR DG E VVTVVR+V GTIEE LE G SSLG EG A+ +G + +S + EAVSLSGTKRKA+D +WS+ PPLR+T WSPV VEDILVEEMVQ+NPDDFDTGRG FDTDETRVFARLA+ GHPVPPPLLSYAVDATLA TPGRSFTERVRDLHLLGISP+PFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDL CSLSYVDRLPSNRNKKLKKALSPR+S+RR+G+Q G G++ KT VEEWTK ED+LLV+AVQQFGENWVLVAFSINK PILRGRMRSGSQ KARH+NLVALGAA RSPRG+ RP SV RLP TY +PLVP+A AAARQ F+ARF+ALVKAV+KKPIPPPIPGCDNP+
Sbjct: 665 DQWYEHYHAVRRVRDNEASRGEGGLPILPGEVAAMRRHRLVKAAEPQNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPRILPPVKPPRRRK----TLWDFLLDEMRLIATDYNEERKLARH-----------LLRGVANRTRLARRE----LCEGR----------PQARDGRVADAGVAICRHLSLLASSPXXXXXXXXXXXXXXXXXXXXXXXXKGPLLAS--WSSGGVGGETEAVGGGEEVELTMPELSRIGFEVEQLTTRAKALVEASLAGDAGKASPVKIEGMVASDGPGSNGVAGYEE-------FSSRNLSRAPDSWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLAQEKKR--LSERLVKGEAEE-SGAASGXXXXXXXXXXXXXXXXXXXXXXXKASPPRQGTLAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXXXXXXQQKLSPQATAAGGSVS------GKARLPPTARRSSADVVLCSLERLAEVDGGXXXXXXXXXXXXXXXXXXXRCAMTKPQAKVYSAVARSREVVAALSGEGTTIPPPALA---SNGLSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGALLSAGQAEAQKEEFWRGHVKDLELSVPERLEKYSGKLAKLGRAVARLAAAGKKVLVLGALPDARLLVHQYLVETDVPHECWAGNGEMFPNVAEEESTRG--VDAGTAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXAALSVGPGVAAXXXXXXXSPALAPL-SAHHNPLGSFPSRSPFPQAPVT-PPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILEAVAGGSGLCPNGEQPRPDGSSVRRGSLLGLGPIDAVLIFDEGPPITTRTTAXXXXXXXXXXWSRAALAAALQSLLTLPRCARRSS-APRAIRSMP-------ATGGGAAADENGRVDGXXXXXXXXXXXXESVVTVVRYVANGTIEETLEGEGDKG-ISSLGAGGEGIAVRCSL-EGKTFLKQGEAASASAS-------EGTEAVSLSGTKRKAADGXXXXGCSGVDMLGANGKHWSEGAPPLRRTCPWSPVGVEDILVEEMVQMNPDDFDTGRGCFDTDETRVFARLADGGHPVPPPLLSYAVDATLATTPGRSFTERVRDLHLLGISPEPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLSCSLSYVDRLPSNRNKKLKKALSPRESSRREGEQPGAGRRNKTSVEEWTKMEDTLLVSAVQQFGENWVLVAFSINKCPILRGRMRSGSQNKARHANLVALGAAGQRSPRGA----RPKSV---RLPPTY--------------------LPLVPVAGAAARQAFSARFAALVKAVKKKPIPPPIPGCDNPE 2049
BLAST of mRNA_P-lacustris_contig108.677.1 vs. uniprot
Match: A0A6H5JI88_9PHAE (Myb-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI88_9PHAE) HSP 1 Score: 898 bits (2321), Expect = 3.540e-291 Identity = 635/929 (68.35%), Postives = 681/929 (73.30%), Query Frame = 1
Query: 4651 LSAHHRPPGSFFLGGEV----LLPPKPAHERLWSGVQGPLWRFRCSSRTPVLLAPPSAVIEAVAGGSGLCPNGE--RKASKSVRKGCLLGLGPIDAVLIFDEDPTTTTSPTATSSR-----TALIAALKSLLALPLCAR-SFSPSS-RAACSSSGAAAGKGA--DGGGVAV--GRADGERVVTVVRFVTEGTIEEALEEGGTAAWTSSLGVRFEGTAM-STLYSQ------------------------------------------------------------------------GDDTINPNPTLKNRSSFCWGFHFQVP-----EAVSLSGTKRKASDDG-------DG-NWSDCLPPLRKTSSWSPVRVEDILVEEMVQLNPDDFDTGRGSFDTDETRVFARLAEEGHPVPPPLLSYAVDATLAATPGRSFTERVRDLHLLGISPDPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLGCSLSYVDRLPSNRNKKLKKALSPRDSARRDGDQFGVGKKTKTIVEEWTKTEDSLLVNAVQQFGENWVLVAFSINKYPILRGRMRSGSQCKARHSNLVALGAA-HRSPRGSNSSNRPLSVLSVRLPETYRGAAILPDQPPALTLAMRSRVPLVPMASAAARQMFAARFSALVKAVQKKPIPPPIPGCDNPDALIQPAHNSHAKAAEEAGAAGALAPTQITDRQRATLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGHGIQPQAPLAVSVAEQHQQLQQGGSIPVVASSAPPPTMGPGGSAVGGALATGGAAGVAPTSPAQKLAANLSSQVRALLSRAPNIPGAAGGPTGATNQVLETLRLHPQLTAKIQATIHRTDTTDAQKVEALASMLSAVR 7125
LSAHH P GSF PPKPAHERLWSGVQGPLWRFRCS RTPVLLAPPSA++EAVAGGSGLCPNGE R SVRKG L GLGPIDAVLIFDE P T + TAT AL AAL+SLL LPLCAR S +P + R+ ++ G AA + D GGVA GRA+GERVVTVVR+V +GTIEE LE G SSLG R G + YS G + I +L+ ++ G EAVSLSGTKRKA G DG +WS+ PPLR+T WSPVRVEDILVEEMVQ+NPDDFDT RG FDTDETRVFARLAE GHPVPPPLLSYAVDATLAATPGRSFTERVRDLHLLGISP+PFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLGCSLSYVDRLPSNR+KKLKKALSPR+S+RR+G+ G G++ KT VEEWTK EDSLLV+AVQQFGENWVLVAFSINK PILRGRMRSGSQCKARH+NLVALGAA RS RG+ RPLSV RLP TYRG AILPDQP ALT+AMRSRVPLVP+A AAARQ FAARF+ALVKAV+KKPIPPPIPGCDNP+ALIQPAHNSHAKAAEEAGAAGALAPTQITDRQRA L+QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +GHGIQPQAPL VS +Q LQQGGS+ + G ALA GG AG APTSPAQ LAANLSSQVRALLSRAPN+PGAAGG +TNQVLE LRLHPQLTAKIQATIHRTDTTDAQKVEALASMLSAVR
Sbjct: 75 LSAHHNPLGSFPSRSPSPQAPATPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILEAVAGGSGLCPNGEQPRPDGSSVRKGSLCGLGPIDAVLIFDEGPPITRA-TATXXXXXXXXAALAAALQSLLTLPLCARRSSAPRAIRSMLATGGGAADENGRVDRGGVATAAGRAEGERVVTVVRYVVDGTIEETLEGEGDKG-ISSLGGRPLGEVLFGPTYSDRGSAKPVSAGATSEAASAPEIPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPPAAGAEVGVEGIAVRCSLEGKTYLKQGEAASASASEGTEAVSLSGTKRKAGGGGGADMLGADGKHWSEGAPPLRRTCPWSPVRVEDILVEEMVQMNPDDFDTERGCFDTDETRVFARLAEGGHPVPPPLLSYAVDATLAATPGRSFTERVRDLHLLGISPEPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLGCSLSYVDRLPSNRSKKLKKALSPRESSRREGEHPGAGRRNKTSVEEWTKMEDSLLVSAVQQFGENWVLVAFSINKCPILRGRMRSGSQCKARHANLVALGAAGQRSQRGA----RPLSV---RLPPTYRGTAILPDQPAALTMAMRSRVPLVPVAGAAARQAFAARFAALVKAVKKKPIPPPIPGCDNPEALIQPAHNSHAKAAEEAGAAGALAPTQITDRQRAALIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----AGHGIQPQAPLPVSAGQQP--LQQGGSVGXXXXXXXXXXXXXXXAPAGVALAAGGVAGAAPTSPAQNLAANLSSQVRALLSRAPNMPGAAGG---STNQVLEALRLHPQLTAKIQATIHRTDTTDAQKVEALASMLSAVR 984
BLAST of mRNA_P-lacustris_contig108.677.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE) HSP 1 Score: 275 bits (703), Expect = 1.350e-71 Identity = 270/597 (45.23%), Postives = 309/597 (51.76%), Query Frame = 1
Query: 2284 WYDHYDAVQRVRDTEAS-AWGGVPVLPGEVAAMRRQRLVKAAEPLNQRGLTRFQLSQMLEEKTKAFKDVRGRLRQVLERKPAYCPLSSRPGGARPCGTSFWT------RCASSPPTTMRSAS*HGTSCEAWPSECSLPGGSSARGGQRRETDESLMQGKHSAATSTSSPPRPRALRPSPFRTALPRVEPEEAGRARSCLLA*LLXXXXXXXXXXXXXXXRDPGMREIIWSQWR*RCRS*VGSGLRWSSPWQARGHSRGRHSQQTR*RRPL*RWS---LRTP*VASATAAVTGPQGTPS------FPLATSAGHQTRGEWPSICSPIRLRRCRGSEG*PVAVL-------------------GVLCDEQGTGKTVTAAASVALLAACRALVESERVTVFLAQERERTRLAEGAVKGESEVCTRGASGSSAAKTASGXXXXXXXXXXXXXSSKGMPGRGTLGVRPRPGRLAPPPQLVVVPSWAMARWHMELAQACPRLVIQVWEDWTDQERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKGRLPSTARHSSADVVLCSLERLAEVDGGVSVDVRLARSVRWTQ 3969
WY HY AV+RVRD EAS GG+P+ PGEVAAMRRQRLVKAAEP NQRGLTRFQLSQMLEEKTKAFKDVR RLR VLERKP P P + + W R ++ R + H L G ++ RRE E Q + +AG A C LL XXXXXXXXXX + L S P + G G + T + L T A AA+ G G S G + S L R S G V +L GVLCD++GTGKTVTAAA+VA++AACR++VE+ER +FL QE +R L+E VKGE+E + ASG+S+A XXXXXXXXX + PGRG L +RPRPG LAPPPQLVVVPSWAMARWHMELAQACPRLVI+VWE+W QE XXXXXXXXXXXXXXXX K RLP TAR SS DVVLCSLERLAEVDGGVS D RLARSVRW+Q
Sbjct: 235 WYQHYHAVRRVRDNEASRGGGGLPIPPGEVAAMRRQRLVKAAEPQNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPRILPPVKPPRRRK----TLWDFLLDEMRLIATDYNEERKLARH-----------LLRGVANRTRLARREFCEGRPQARDGRVA--------------------------DAGVA-ICRHLSLLGSSPPXXXXXXXXXXXXXXXXXXXXXXXK--------GPLLASCPSTSGGIGGGEEMELTMPELSRIGFEVEQLTTRAKALVEAALAGDAGKASPVKMEGLDALDGTGINGAAGYNEFSSR-NLSRAPDSWGMAVHLLPHQEKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLVQEEKR--LSEHLVKGEAEE-SGAASGASSAGXXXXXXXXXXXXXGRTSTKASRPGRGALAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXLQQKLSPQATAAGGSVS----------GKARLPPTARRSSVDVVLCSLERLAEVDGGVSADARLARSVRWSQ 767
BLAST of mRNA_P-lacustris_contig108.677.1 vs. uniprot
Match: A0A836CLW7_9STRA (HSA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLW7_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 2.300e-6 Identity = 56/192 (29.17%), Postives = 87/192 (45.31%), Query Frame = 1
Query: 5605 YAVDATLAATPGRS--FTERVRDLHLLGISPDPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWM---STSFGQDLGCSLSYVDRLPSNRNKKLKKALSPRDSARRDGDQFGVG-------------------KKTKTIVEEWTKTEDSLLVNAVQQFG-ENWVLVAFSINKYPILRGRMRSGSQCKARHSNLV 6105
Y DA AA + F +RV +L LG++ +P L CM L PP V + A P+++ +++FG+ LG +LS + R S R+ K K ++ EEWT ED+ L+ AV+ FG +W L AF++N+ P LRGR+R + + R++ L
Sbjct: 1578 YGGDAAAAAMANATLAFKQRVSELRALGVACEPLLQCM----LPPPPPRGGVRDAAAR-PAYLGDAASAFGR-LGATLSLIARPASQRSHKAKDHKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRLVDAAEEWTPAEDARLIRAVEAFGGTSWALAAFALNRDPALRGRLRGAAAVQRRYAELA 1763 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig108.677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig108.677.1 >prot_P-lacustris_contig108.677.1 ID=prot_P-lacustris_contig108.677.1|Name=mRNA_P-lacustris_contig108.677.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=1221bp MPGRGTLGVRPRPGRLAPPPQLVVVPSWAMARWHMELAQACPRLVIQVWEback to top mRNA from alignment at P-lacustris_contig108:42611..80131- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig108.677.1 ID=mRNA_P-lacustris_contig108.677.1|Name=mRNA_P-lacustris_contig108.677.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=37521bp|location=Sequence derived from alignment at P-lacustris_contig108:42611..80131- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig108:42611..80131- >mRNA_P-lacustris_contig108.677.1 ID=mRNA_P-lacustris_contig108.677.1|Name=mRNA_P-lacustris_contig108.677.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=7326bp|location=Sequence derived from alignment at P-lacustris_contig108:42611..80131- (Pleurocladia lacustris SAG_25_93)back to top |