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Homology
BLAST of mRNA_P-lacustris_contig108.675.1 vs. uniprot
Match: A0A6H5L010_9PHAE (Atx10homo_assoc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L010_9PHAE) HSP 1 Score: 425 bits (1093), Expect = 1.070e-128 Identity = 310/587 (52.81%), Postives = 345/587 (58.77%), Query Frame = 1
Query: 58 RNAAGSRDSSSNNGTSRVIHGKGKTSHQMPTSQ--SRASRSDH---LAERHPDRHDCRGGAEEETARRAFSRSQDLPQDPAFDAPPPQASPVAASALCRVFTFLRNSCVGCPANNRALRHTGLAEAASAALQFAVDQAPFACGAATSHPAA-TMDCNRGVGGTSDVRLAVRAGLQFACNYCVGGEENKALLWADWFPRGLMELVNGLKTDRGLLSLAVALIHTCCASPPPCEGRGDGCGDRGSTAEHGEGIXXXXXXXXXXXXXXRERLGRLVADRAFCCLLVKVV----------VPRSASNSVV---GELDHDPAREWLYLLFCSLVQEGLCRDVFDNVGIRAGGRQRQPRPRRPQSGGAVVEPSTEEMVVERREEGHDAVDVGGSARVSTGAAGLEGLDGKERKGGRGDEEAEAEEDDFFF------PVTPEQLIVLNLAEIAA------ADEAVTGGERPNALQRQACAALLGWLAGLLSAMPLSQTLLPPTDTSP---------------VPPAVKKPAAELPQRTTPSPTSTEGQNEDVVVDEVSDVETERVRRSMREEARSATLRALAALLSGCGDETRQ 1680
+N++GS D +N S V G G+TS + P SR R+DH +R + DCRGG +E A RA DLPQDP FD PP+ P AA AL R FTFLRN+C GCP NN ALRHTGLAEAASA LQFAVDQA FAC A TSHPAA T +C VGGTSDVRLAVRAGLQFA NYC G EE+K LWA WFPRGLMELVN LKTDRGLLSLAVALIH CC SP P E D DRGS ++G G X RERL L AD+AFC V S S+S GE D DPA EWLYLLFC VQE LCR V+DNVGIRAG +R+ RPRR GAVV S V + E A GS R +G E G+ KG R DE PVTPEQLIVLNLAE+A +DE VTGGE P+ QRQAC+AL WL GLLSAMPLSQ+LLP T T+ KP SP+S+ G +ED +D ETERVRRSMREEARSA LR LAALL+GC DETRQ
Sbjct: 3 KNSSGSSDFKTN--ISAV--GGGRTSFRPPPPPLPSREPRNDHDGGHTDRQQNGQDCRGGVGDEAATRAVLPGGDLPQDPPFDTAPPRTPPAAARALRRAFTFLRNACAGCPGNNHALRHTGLAEAASA-LQFAVDQALFAC-ATTSHPAASTAECQSEVGGTSDVRLAVRAGLQFAYNYCAGSEESKVSLWAAWFPRGLMELVNELKTDRGLLSLAVALIHNCCISPRPREPGEDDGSDRGSNRDNGAGEAGXEEADGGERSRGRERLALLSADKAFCXXXXXXXXXXXXXXXXXVGASGSHSRERSGGEPDDDPAAEWLYLLFCCFVQERLCRRVYDNVGIRAG--KRRKRPRRRGGCGAVVVDSA--RVAQSGGEEDGAAGGSGSVRAISGVGRGEEEWGEGGKG-RVDEXXXXXXXXXXXXXXXXXPVTPEQLIVLNLAELATGKCGWNSDEVVTGGECPSPRQRQACSALASWLTGLLSAMPLSQSLLPRTGTAQPXXXXXXXXXXXXXXXXXXXXKPL---------SPSSSAG-DEDRGDGVAADAETERVRRSMREEARSAALRGLAALLAGCSDETRQ 568
BLAST of mRNA_P-lacustris_contig108.675.1 vs. uniprot
Match: D8LJX9_ECTSI (Atx10homo_assoc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX9_ECTSI) HSP 1 Score: 277 bits (708), Expect = 6.660e-77 Identity = 201/431 (46.64%), Postives = 217/431 (50.35%), Query Frame = 1
Query: 430 ALQFAVDQAPFACGAATSHPAA-TMDCNRGVGGTSDVRLAVRAGLQFACNYCVGGEENKALLWADWFPRGLMELVNGLKTDRGLLSLAVALIHTCCASPPPCEGRGDGCGDRGSTAEHGEGIXXXXXXXXXXXXXXRERLGRLVADRAFCCLLVKVVVPRSASNSVVGELDHDP-------------AREWLYLLFCSLVQEGLCRDVFDNVGIRAGGRQRQPRPRRPQSGGAVVEPSTEEMVVERREEGHDAVDVGGSARVSTGAAGLEGLDGKERKGGRGDEEAEAEEDDFFFPVTPEQLIVLNLAEIAAADEAVTGGERPNALQRQACAALLGWLAGLLSAMPLSQTLLPPTDTSPVPPAVKKPAAELPQRTTPSPTSTEGQNEDVVVDEVSDVETERVRRSMREEARSATLRALAALLSGCGDETRQ 1680
ALQFAVDQAPFAC A TSHPAA T +C VG SDVRLAVRAGLQFA NYC G EE+KA LWA WFPRGLMELVN LKTDRGLLSLAVAL+H CC SPPP E R D R S ++G G XXXXXXXX RERL L AD+AFCC A EWLYLLFC VQE LCR V+DNVGIRAG R ++PR ADE VTGGERP QRQAC AL WL GLLSA+PLSQ+LLP T T+ P +E+ +D ETERVRRSMREEARSA LRALAALL+GC DETRQ
Sbjct: 3 ALQFAVDQAPFAC-ATTSHPAARTAECQSEVGDASDVRLAVRAGLQFAYNYCAGSEESKASLWAAWFPRGLMELVNELKTDRGLLSLAVALVHNCCISPPPREPREDDGSPRESNRDNGTGEAXXXXXXXXERSRGRERLDLLSADKAFCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEWLYLLFCCFVQERLCRRVYDNVGIRAGKRTKRPR--------------------------------------------------------------------------------------RQADEVVTGGERPCPRQRQACGALAAWLTGLLSAIPLSQSLLPRTGTAQPPXXXXXXXXXXXXXXXXXXXXXSAGHEERGDGVATDAETERVRRSMREEARSAALRALAALLAGCSDETRQ 346
BLAST of mRNA_P-lacustris_contig108.675.1 vs. uniprot
Match: A0A3M6VRE6_9STRA (Atx10homo_assoc domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRE6_9STRA) HSP 1 Score: 110 bits (275), Expect = 3.370e-21 Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = 2
Query: 2147 RASESGKYARATGVPAGRKVELLKVIGNACFRCRSSQDLAREEGGLLLVLNHCAVDSENPLLREYALLAVRNLCEGNSANQAAIASLRPQGCTPGMDEALADMGLEGHVNSKGQFSV 2497
RA++S + G P G + L++VIGN CFR QDL R+EG L L LNHC +D NPL+RE++L+A+RNLCEGN ANQ+ I +LRPQG D AL + H+ G+ +
Sbjct: 443 RATKSTLQPQTNGEPLGYRSRLIRVIGNLCFRHTYHQDLIRDEGYLPLFLNHCNIDETNPLVREWSLVALRNLCEGNEANQSFINALRPQGMDAASDTALEKAKVRVHIEEDGKVKL 559
BLAST of mRNA_P-lacustris_contig108.675.1 vs. uniprot
Match: A0A835ZAD7_9STRA (Spinocerebellar ataxia type 10 protein domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD7_9STRA) HSP 1 Score: 100 bits (249), Expect = 5.830e-21 Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 2
Query: 2183 GVPAGRKVELLKVIGNACFRCRSSQDLAREEGGLLLVLNHCAVDSENPLLREYALLAVRNLCEGNSANQAAIASLRPQGCTPGMDEALADMGLEGHV 2473
GVP GRK +L+KVI NAC CR++QD R GG+ LVL+HC +D +P LRE+ ++AVRNLCEGN+ NQA +A L QG EA A + H
Sbjct: 22 GVPHGRKADLVKVIANACHCCRAAQDRVRGAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKLEKQG------EAAATGSAQQHA 112
BLAST of mRNA_P-lacustris_contig108.675.1 vs. uniprot
Match: W2PP19_PHYPN (Atx10homo_assoc domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2PP19_PHYPN) HSP 1 Score: 108 bits (271), Expect = 1.060e-20 Identity = 58/115 (50.43%), Postives = 76/115 (66.09%), Query Frame = 2
Query: 2147 RASESGKYARATGVPAGRKVELLKVIGNACFRCRSSQDLAREEGGLLLVLNHCAVDSENPLLREYALLAVRNLCEGNSANQAAIASLRPQGCTPGMDEAL------ADMGLEGHV 2473
RA+ S +ATG P G + L++VIGN FR QDL REEG L L LNHC +D NP++RE++L+A+RNLCEGN ANQ+ I +LRPQG + AL AD+G++G V
Sbjct: 445 RAAGSTMQTQATGEPFGYRSGLIRVIGNLSFRHTDHQDLVREEGYLPLFLNHCNIDETNPMIREWSLVALRNLCEGNEANQSYINALRPQGMDAASNAALDKAKMQADIGVDGKV 559
BLAST of mRNA_P-lacustris_contig108.675.1 vs. uniprot
Match: A0A225VEV9_9STRA (Atx10homo_assoc domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VEV9_9STRA) HSP 1 Score: 103 bits (258), Expect = 2.600e-19 Identity = 57/115 (49.57%), Postives = 72/115 (62.61%), Query Frame = 2
Query: 2147 RASESGKYARATGVPAGRKVELLKVIGNACFRCRSSQDLAREEGGLLLVLNHCAVDSENPLLREYALLAVRNLCEGNSANQAAIASLRPQGCTPGMDEAL------ADMGLEGHV 2473
RA+ S + G P G + L++VIGN FR QDL REEG L L LNHC +D NP++RE++L+A+RNLCEGN ANQA I +LRPQG AL AD+G +G V
Sbjct: 374 RAAGSTVQPQTNGEPFGYRSGLIRVIGNLSFRHTYHQDLVREEGYLPLFLNHCNIDETNPMIREWSLVALRNLCEGNEANQAYITALRPQGMDASSSAALDKTKMRADIGEDGKV 488
BLAST of mRNA_P-lacustris_contig108.675.1 vs. uniprot
Match: A0A8K1CP50_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP50_PYTOL) HSP 1 Score: 104 bits (259), Expect = 3.140e-19 Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 2
Query: 2189 PAGRKVELLKVIGNACFRCRSSQDLAREEGGLLLVLNHCAVDSENPLLREYALLAVRNLCEGNSANQAAIASLRPQGCTPGMDEALADMGLEGHVNSKGQFSVRPRPATS 2518
P G + +++V+GN C R S Q+L REEG L L LNHC +D NPLLRE++L+A+RNLCEGN ANQA I +LRPQG + L+++ +E ++ G+ V +P S
Sbjct: 455 PFGYRSAIIRVVGNMCHRQESHQNLVREEGYLPLFLNHCNIDEPNPLLREWSLVALRNLCEGNEANQAYITALRPQGLDSS-NVNLSNVNVEASLSDDGKVRVTQKPGPS 563
BLAST of mRNA_P-lacustris_contig108.675.1 vs. uniprot
Match: G4YXX2_PHYSP (Atx10homo_assoc domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YXX2_PHYSP) HSP 1 Score: 102 bits (255), Expect = 3.810e-19 Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 2
Query: 2147 RASESGKYARATGVPAGRKVELLKVIGNACFRCRSSQDLAREEGGLLLVLNHCAVDSENPLLREYALLAVRNLCEGNSANQAAIASLRPQGCTPGMDEALADMGLEGHVNSKGQFSVR 2500
RA+ S ++G P G + L++VIGN +R QDL RE+G L L LNHC +D NP++RE++L+ +RNLCEGN ANQ+ I +LRPQG + AL + +N G+ +++
Sbjct: 322 RAAGSSAQPLSSGEPFGYRSGLIRVIGNLSYRHTDHQDLVREQGYLPLFLNHCNIDETNPMIREWSLVTLRNLCEGNEANQSYINALRPQGMDAASNAALEKTKMRADINEDGKVTLK 439
BLAST of mRNA_P-lacustris_contig108.675.1 vs. uniprot
Match: A0A329S699_9STRA (Atx10homo_assoc domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S699_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.300e-18 Identity = 56/115 (48.70%), Postives = 73/115 (63.48%), Query Frame = 2
Query: 2147 RASESGKYARATGVPAGRKVELLKVIGNACFRCRSSQDLAREEGGLLLVLNHCAVDSENPLLREYALLAVRNLCEGNSANQAAIASLRPQGCTPGMDEAL------ADMGLEGHV 2473
RA+ S + G P G + L++VIGN FR QDL REEG L L LNHC +D NP++RE++L+A+RNLCEGN ANQ+ I +LRPQG AL AD+G +G+V
Sbjct: 446 RATGSTMPPQTNGEPFGYRSGLIRVIGNLSFRDTDHQDLVREEGYLPLFLNHCNIDETNPMIREWSLVALRNLCEGNEANQSYINALRPQGMDAASTAALEKAKMRADIGGDGNV 560
BLAST of mRNA_P-lacustris_contig108.675.1 vs. uniprot
Match: A0A662XYY0_9STRA (Atx10homo_assoc domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYY0_9STRA) HSP 1 Score: 100 bits (250), Expect = 3.090e-18 Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 2
Query: 2189 PAGRKVELLKVIGNACFRCRSSQDLAREEGGLLLVLNHCAVDSENPLLREYALLAVRNLCEGNSANQAAIASLRPQGCTPGMDEALADMGLEGHVNSKGQFSVR 2500
P G + L++V+GN FR + QDL R+EG L L LNHC +D NPL+RE++L+A+RNLCEGN ANQ+ I++LRPQG AL + V+ G+ ++
Sbjct: 415 PFGYRSGLIRVVGNLSFRHSAHQDLVRDEGYLPLFLNHCNIDETNPLIREWSLVALRNLCEGNEANQSYISALRPQGMDSASSVALEKAQMHAEVDDDGKIKLK 518
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 287.7 |
| Seed ortholog evalue | 1.2e-74 |
| Seed eggNOG ortholog | 2880.D8LJX9 |
| Preferred name | ATXN10 |
| KEGG rclass | RC00004,RC00503 |
| KEGG ko | ko:K01641,ko:K18932,ko:K19323,ko:K20003 |
| KEGG Reaction | R01978 |
| KEGG Pathway | ko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130 |
| KEGG Module | M00088,M00095 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0019899,GO:0022008,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030425,GO:0031175,GO:0032501,GO:0032502,GO:0036477,GO:0042802,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044782,GO:0048468,GO:0048471,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0051259,GO:0051260,GO:0060271,GO:0065003,GO:0070206,GO:0070207,GO:0070925,GO:0071840,GO:0071944,GO:0097447,GO:0097458,GO:0120025,GO:0120031,GO:0120036,GO:0120038 |
| EggNOG free text desc. | threonine biosynthetic process |
| EggNOG OGs | KOG2676@1,KOG2676@2759 |
| Ec32 ortholog description | Armadillo-type fold |
| Ec32 ortholog | Ec-06_007380.2 |
| EC | 2.3.1.225,2.3.3.10 |
| COG Functional cat. | J |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko04131 |
| Exons | 8 |
| Model size | 3682 |
| Cds size | 1794 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815353.9813905-UTR-P-lacustris_contig108:9254..9395 | 1622815353.9813905-UTR-P-lacustris_contig108:9254..9395 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig108 9255..9395 + |
| 1693493495.1935499-UTR-P-lacustris_contig108:9254..9395 | 1693493495.1935499-UTR-P-lacustris_contig108:9254..9395 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig108 9255..9395 + |
| 1622815354.0830958-UTR-P-lacustris_contig108:13055..13454 | 1622815354.0830958-UTR-P-lacustris_contig108:13055..13454 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig108 13056..13454 + |
| 1693493495.2779684-UTR-P-lacustris_contig108:13055..13454 | 1693493495.2779684-UTR-P-lacustris_contig108:13055..13454 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig108 13056..13454 + |
| 1622815354.100375-UTR-P-lacustris_contig108:14126..15124 | 1622815354.100375-UTR-P-lacustris_contig108:14126..15124 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig108 14127..15124 + |
| 1693493495.2853088-UTR-P-lacustris_contig108:14126..15124 | 1693493495.2853088-UTR-P-lacustris_contig108:14126..15124 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig108 14127..15124 + |
| 1622815354.1133645-UTR-P-lacustris_contig108:15152..15502 | 1622815354.1133645-UTR-P-lacustris_contig108:15152..15502 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig108 15153..15502 + |
| 1693493495.2926302-UTR-P-lacustris_contig108:15152..15502 | 1693493495.2926302-UTR-P-lacustris_contig108:15152..15502 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig108 15153..15502 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815353.9993076-CDS-P-lacustris_contig108:9395..9683 | 1622815353.9993076-CDS-P-lacustris_contig108:9395..9683 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig108 9396..9683 + |
| 1693493495.2075193-CDS-P-lacustris_contig108:9395..9683 | 1693493495.2075193-CDS-P-lacustris_contig108:9395..9683 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig108 9396..9683 + |
| 1622815354.016524-CDS-P-lacustris_contig108:10288..10374 | 1622815354.016524-CDS-P-lacustris_contig108:10288..10374 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig108 10289..10374 + |
| 1693493495.217334-CDS-P-lacustris_contig108:10288..10374 | 1693493495.217334-CDS-P-lacustris_contig108:10288..10374 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig108 10289..10374 + |
| 1622815354.0280607-CDS-P-lacustris_contig108:10385..10512 | 1622815354.0280607-CDS-P-lacustris_contig108:10385..10512 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig108 10386..10512 + |
| 1693493495.2270188-CDS-P-lacustris_contig108:10385..10512 | 1693493495.2270188-CDS-P-lacustris_contig108:10385..10512 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig108 10386..10512 + |
| 1622815354.0392113-CDS-P-lacustris_contig108:10739..10988 | 1622815354.0392113-CDS-P-lacustris_contig108:10739..10988 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig108 10740..10988 + |
| 1693493495.2423735-CDS-P-lacustris_contig108:10739..10988 | 1693493495.2423735-CDS-P-lacustris_contig108:10739..10988 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig108 10740..10988 + |
| 1622815354.050632-CDS-P-lacustris_contig108:11582..12015 | 1622815354.050632-CDS-P-lacustris_contig108:11582..12015 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig108 11583..12015 + |
| 1693493495.2555265-CDS-P-lacustris_contig108:11582..12015 | 1693493495.2555265-CDS-P-lacustris_contig108:11582..12015 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig108 11583..12015 + |
| 1622815354.0661514-CDS-P-lacustris_contig108:12444..13055 | 1622815354.0661514-CDS-P-lacustris_contig108:12444..13055 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig108 12445..13055 + |
| 1693493495.2694142-CDS-P-lacustris_contig108:12444..13055 | 1693493495.2694142-CDS-P-lacustris_contig108:12444..13055 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig108 12445..13055 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig108.675.1 >prot_P-lacustris_contig108.675.1 ID=prot_P-lacustris_contig108.675.1|Name=mRNA_P-lacustris_contig108.675.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=598bp
MPTSQSRASRSDHLAERHPDRHDCRGGAEEETARRAFSRSQDLPQDPAFD APPPQASPVAASALCRVFTFLRNSCVGCPANNRALRHTGLAEAASAALQF AVDQAPFACGAATSHPAATMDCNRGVGGTSDVRLAVRAGLQFACNYCVGG EENKALLWADWFPRGLMELVNGLKTDRGLLSLAVALIHTCCASPPPCEGR GDGCGDRGSTAEHGEGIGAERETGKEEEGGGRERLGRLVADRAFCCLLVK VVVPRSASNSVVGELDHDPAREWLYLLFCSLVQEGLCRDVFDNVGIRAGG RQRQPRPRRPQSGGAVVEPSTEEMVVERREEGHDAVDVGGSARVSTGAAG LEGLDGKERKGGRGDEEAEAEEDDFFFPVTPEQLIVLNLAEIAAADEAVT GGERPNALQRQACAALLGWLAGLLSAMPLSQTLLPPTDTSPVPPAVKKPA AELPQRTTPSPTSTEGQNEDVVVDEVSDVETERVRRSMREEARSATLRAL AALLSGCGDETRQLTAAKVATSASAVAIVPSKVAVEPPPATAGFVAQHAQ TAAEAKVVGSIDEDASAARGCRGPLEMSSAAVSHHRQNSYHRRKLRR* back to topmRNA from alignment at P-lacustris_contig108:9255..15502+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig108.675.1 ID=mRNA_P-lacustris_contig108.675.1|Name=mRNA_P-lacustris_contig108.675.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6248bp|location=Sequence derived from alignment at P-lacustris_contig108:9255..15502+ (Pleurocladia lacustris SAG_25_93) AGGCATCGGGTTTTCGACGACCCGCTATTGATCTCGCAGCTCGTTGACAC
CGTCAAGAGAAACGCTGCTGGATCGAGAGACTCCAGTTCGAACAATGGTA
CCAGCCGCGTCATCCACGGCAAGGGTAAGACTTCTCACCAAATGCCGACA
TCACAATCGCGTGCATCAAGAAGCGACCACCTAGCTGAGCGGCACCCGGA
CCGACATGACTGCAGGGGGGGTGCCGAGGAAGAGACAGCAAGACGAGCTT
TTTCACGAAGCCAAGACCTACCCCAAGACCCTGCCTTCGATGCGCCCCCG
CCCCAGGCGTCGCCTGTCGCCGCAAGCGCGCTCTGCAGGGTATTCACCTT
CCTAAGAAACTCGTGCGTAGGGTGCCCGGCCAACAACCGCGCCCTTCGCC
ACACCGGGCTCGCAGAAGCGGCGAGTGCTGTACAGAAGTGGACATTCAAA
ACACGTAGTGAAACTTCTCATTGTTCCTGGGATCGATTTGAATGATACCA
GGCGCCACGCCCGAGCACGCCTTTGGGGTGTGGCACTACTCGAAGGCGGT
AGGCGGCCGGTGGCTTGTGGACTCTGATCGTTTGGCACCTACCGCCGCAT
GTGCTTTTTTCTTGGTTGTGTTCGGCTTGTATCGTTTGTTGGTAACACCG
TCGGTTCTATTTTCAAAGGCATTATCCACCCCAGCGCGACCGTTTGCGCC
GTTCGTCCATCAATATAGGTCGTCGAGAGCGGGACAGCCAAGCTAGTCCG
AAATATTGTCAACGGCAGTAGATACCCCCATTTTGTGTCTCGGCGTCGGA
GTGTTAGTACGTCGAGAGAAACCGCATGACTACGTAGTCGTTGGCGAAAT
GGTTTGAGCCACACAGGAAATGACCCTCCCCCATGAAAGAAATTCTACGT
TTGCGTGGCGGTAGCAGACTAACCGGCATTTATTCTCTCTCTCTGCCGCA
CCACCGTTGCCGCTTCCGCCACCGTTACTGTGCCTTCCCCGCCCTCGTTC
TGCTGATACCGACACGGAATCAACAAAAATGCAGGCACTTCAATTCGCCG
TCGATCAAGCTCCGTTTGCCTGCGGGGCTGCGACCTCTCACCCCGCCGCC
ACGATGGATTGCAATAGGGGGTGGAGGCCAGGGTGGGGGGCACGTCCGAT
GTCAGGCTTGCCGTGCGAGCTGGCCTCCAGTTCGCCTGCAACTACTGCGT
GGGCGGCGAGGAGAACAAGGCCTTGCTGTGGGCCGACTGGTTCCCTCGGG
GTCTAATGGTACGAGCGTTTGCCGTTTTTGGTTTGTGACGCGACGAGTTC
GAAGCCTTGGTAAAAAGTAAGCGAGAGAAATTTGAAGAAAAGTGATCAGC
GCAAGTTCTCATGACGGAGGGAGACTCTCATGAGCGAGAGATAGACAGAC
AGCAACTTCAGATTTCTGTTTTACACATACCCTAGGCGACGTGCACCACT
TTCTTGTCTATCGCGTCGCGTCCATCGCACGGCAGGAGCTGGTGAACGGC
CTCAAGACGGACCGCGGCTTGCTCTCTCTCGCGGTGGCGTTGATACACAC
TTGCTGCGCCTCGCCCCCGCCGTGCGAGGGAAGAGGGGACGGTTGTGGCG
ACCGAGGAAGTACAGCAGAACACGGGGAAGGGATAGGAGCGGAGAGGGAG
ACGGGGAAGGAAGAAGAAGGGGGAGGACGAGAAAGACTCGGGCGCCTGGT
GGCAGACAGGGCGTTTTGCTGTCTCCTTGTCAAGGTGAGCATTTTGTTTT
TCTGGTCCACACCGCAGTCGGCATTATTGCGGCCCCTGGGAAAGAGAAAC
TGCGTAATAGGTGGAAGTCTGCCGAGAAACGGCTGCCCTGCGAATGTTGA
GGCTGTCCGGGCATGGTATTTTCGACGTGTCCCGGGGCGTTTCTAAATGG
AACACGAAAGTGAAGGCGCCCCAGGCGTTTGCTCGGGTTGTTTTTTGCGA
TTTTTTGCATCTCTTGACGCCACGCGGCGTTTGCATTGATGACGGCGATT
ACTCGGTGCCTCACAGTCTTCATAGCCCAACAAAGTGTTGCTCGGTTCGC
GCACGTGTGTTGCTCGTGTAGTCCAGGACAGTCCTCTGGCCACGCGCCGA
GGGTGATAAATTATTTTCTCGCGCAAACATCTGTGGCCCGGCTCGCCGCT
GAACGCACGAAAGTATTCTGGATCATCTCTCGTAAATCCCTGGCGTGCCT
TCCTTCGGCTCTGCGTCGTTCCCGATGTATGCGGATCGCCCCTCTCACAC
CGTTCCGTTCACGATCAGCGGTCCCTGCTCTCCGTTGTTTATCTTCCACC
GTCTCTTTCTTGGCCATGCGGTTGAAAGGTTGTTGTCCCTCGAAGCGCGA
GCAACAGCGTAGTCGGCGAACTCGATCACGATCCCGCCCGAGAGTGGCTA
TACCTGCTGTTCTGCAGTTTGGTCCAGGAGGGCTTGTGCCGCGACGTTTT
TGACAACGTGGGCATTCGGGCGGGGGGGAGACAACGGCAGCCACGGCCGC
GGCGTCCACAAAGTGGAGGCGCAGTTGTAGAGCCAAGTACGGAAGAGATG
GTTGTCGAGCGGAGAGAGGAAGGGCATGACGCCGTGGACGTTGGCGGCAG
CGCCCGTGTCTCGACGGGCGCCGCTGGATTGGAGGGCCTGGATGGAAAGG
AGCGGAAAGGGGGACGTGGGGACGAAGAAGCGGAAGCGGAAGAGGACGAC
TTTTTCTTTCCTGTGACGCCTGAGCAGCTCATTGTGCTAAACCTGGCGGA
AATCGCAGCGGGTGAGGACTATTCGCGCGTGGTATCGTCGAGTGGTTAGT
GAAAGTAGTACCGGGTATCGATTTTTCTGGGGTTGGTTTTCTCTTGCACG
ACAACAGGGACGCGTTCTTGGAGCTGTGTAATTGTGTCGTAGACGCAAGA
CAGGTATCGGAACATCGAAACAAAATCCACTGTCCGGTTTTGGTGTAGGA
GTAGGAACCGTCGAACAGCTTGGTACCACACCGACACGGCGTAGGTGTGT
ATGTCGCTGGTTTCGTTGCACACGCCACTCCATGGAATCATTTTGACGCT
CCACAGGGCCTAAACTACTGTAGTTTCGTGAATACTGCAAGAAAGATGTG
GGAAGCGGGCTTCCCGTCGAGTAGCGGCCGTTGATGCTGTCCTATCTGTT
GCTGTCCTATCTTCGCGTTCACGTTTGCTTGACGATGCAGCCGACGAGGC
CGTGACAGGCGGCGAGCGCCCCAACGCCCTACAACGCCAAGCGTGCGCGG
CTCTGTTAGGATGGCTGGCTGGGCTCCTCTCGGCGATGCCGCTCAGTCAG
ACCTTGCTCCCGCCGACCGACACCTCGCCGGTACCACCGGCGGTCAAGAA
ACCAGCGGCGGAGCTACCGCAACGAACGACACCATCACCAACATCGACGG
AGGGGCAGAACGAGGATGTTGTTGTTGACGAAGTCTCCGATGTTGAAACG
GAGCGAGTGCGGCGGAGCATGCGCGAGGAGGCGAGGTCCGCCACGCTAAG
GGCGCTGGCGGCCCTGCTCTCGGGATGCGGCGACGAAACCCGGCAACTCA
CCGCCGCGAAGGTGGCGACGAGTGCGTCGGCAGTAGCGATCGTGCCGTCG
AAAGTGGCGGTAGAACCACCGCCGGCGACGGCAGGTTTCGTCGCTCAACA
TGCCCAAACAGCAGCAGAAGCAAAAGTTGTTGGTAGCATCGACGAAGATG
CGAGCGCGGCAAGAGGGTGCCGCGGGCCCTTGGAGATGTCATCGGCCGCG
GTAAGCCATCATCGCCAGAACAGCTACCACCGACGAAAGCTACGCAGATA
GCCATCTCGACGGATGCACAACCTGAAACTAGACTCGTCCCTCTCTGCCT
GCGGCTTCTCGATGGTTGCGGGGAGGCCTCCCGGCCCAAGCCCAAGGTCG
CTTCCCGTAGCGACACTATCTCCTCCACAGGTGGATCGGCGACCCCGGGA
GCGACAACCACTAGAGCCGGAGGGCCATCCCCCGTTAGCAACGATCATGG
GGTGGCCGGCGTAGGGCGAGCGAGAGCGGCAAGTACGCTCGAGCTACCGG
GGTACCGGCTGGGCGCAAGGTGGAGCTGTTGAAGGTGATCGGCAACGCGT
GCTTCCGGTGCCGGAGCTCCCAGGATCTGGCGCGGGAGGAGGGAGGGCTG
TTGCTGGTGCTCAATCACTGCGCTGTGGACAGCGAAAACCCTTTGCTAAG
GTGATTGGGCCGCGTGTCGGTGAAGTCGGTGGAGAATTGCGACCAACATT
TTGGAGAACGATATTCGGAGAGCCCAGCCCCCCCTTAACGTATTGGTAAT
AAAAGGCACTTGGCTGCGCAGGAATTGGAATGTGAATGGAGGAATGGTTT
GAATATATGGTCTTTTTGGGCGGGAGAGGTGCTCATGGCTAGAACTCGAT
AGGTTGGGAGCGCGTTTCGGAGGCTTTTTTCGTCCTGCGCGTGATTGTGG
CTGGGAGTGTCCGGTTTTTTTAGCTGCGTCTGACTCAGAACGTTTGCTTG
CAAGGCGGCTTGAGGGAAAACCTCCGCGTCGCCTTCACTGTAAAAGGGTG
ACTAGCCAACGTGTTCCACCTCCCCGCCGTCACGGAAAAAAGGTATGCAT
AGAGATAACAAAGCTCCTCAGCTCCTTTTCATTGCTGGCGTATGCCTCTC
CCTGCGCCCTCTCGTCTTTCGGTCGCACTTCCTTCCGTCGGCAACTCTGA
CCTACCCCTAGTGTTACCGCTCCGTCGCCAATGCTCCCGTTGGGATTCCT
TTTTGCTCACAACTTGCGGATCTTCCTCCTTTTCTTCCTCCCCCTCTGCC
CGGGGTCCCTTTCCTCCTCCGGATCCCCTCTTGTTGGCCCGCGGTGCGCC
GGCCGAATGCTTTTCTCAACAGAGAGTACGCGCTGCTAGCCGTGCGAAAC
CTGTGCGAGGGGAACTCCGCAAACCAGGCGGCCATCGCCTCCCTGCGGCC
TCAAGGCTGTACGCCCGGGATGGACGAAGCCCTCGCGGACATGGGGCTCG
AGGGACACGTGAATTCGAAGGGGCAGTTCAGTGTTCGCCCTCGTCCTGCA
ACATCGCCTTGCTAGTTAGGGGAGGGAGGTGGGGTGGGGTTCGTGCTGGT
GTCCATAGAGGAAGGACAAGCACTTGCGAACACTGGCTTTGCTTGCACAG
CCGCCCCCAATGAATCGAAAAAGCAACAGCTTGTGGGGGAGGCGGGGGGC
GTGATGGGATGGCAGCATAGATATCTAGGCTCGGCGTGCGTCGTAGGGTA
CAGAATTAGCCGGCCACTTGCGTACATGTCTGGTGTGTCTTTTAACTTAA
CCTCGTGAGAGACCCGCAAGAGGCGGGCGGGGCAGGCTTGTATCTCGGTA
CGGGGCGGTGGCACAACAATTTCTGGGGTATGCATTTCTGCGTGGCGATG
TGGCGCCGTCTAGACTGTCAAGGTCTACACATGAGGTCAAGCGTAGGCAG
CGTGAAACGTGCAGGCGTGTGCACTTTTGCGCGCGGAAGAGATTGGTTCC
CCGCGCACGTTTCTCAACCTGGTGTGTACGGCATCTACCCGCCTAAAAAG
CACATGGTGGCGGTCAGGAATTAAAACTCGTGTGTGCATAATATTGTTGT
GCTTTGCTCTCCAAGCATGACGATCGAGTCCGGGTAACATGCCATGACTA
CGTGGGCGCCAGTGAGGAAAATATGTGGTACTCTTTCTAGCTGTCTGTAC
TCGTCCTAGCTGCTGAGCTCCGCAGAGAGCATCACGGCGCGAACAGAGAG
TGGTAGCGAAAGGCTAGAGAGTAGGGGCAACATCAAGAATGGAAAATCGT
CTTTTCTCATGCGCGGACCCCCTAACAACTGAAAATTGAGTGGGAGATAG
AGATAGCTGGAGAGAGAAACGCACTACTTTTGAGACTGGGGGCTCGAGTG
AGGGTTGAGTGAGGGTTACGCGAACTGGACTCTCACTAGTCACGGGGGTG
CGAGATACAACACACATGCAGCGCAGCTCACAGCTCAGCCGGACAACTAG
CAGAGGGATGAACGAGGACAGCGAAGAAGAGTACCCTCACTGCGTGCTCG
AGTCAGTCACATGAAGGTCAACCATGCAAATTTCAAGAAACAACTGCTGC
TGCCGGCGGTGGTACATCCGCACGTACACAGAGACTCTGTGTACATGCGC
GGAGCACGGCCTCTCCAATGGACAGTCTCTATCCGGGGGCCTGCCATCTC
TGAATCACCTATGCTATAATTAAGACGTTTTTTTTTCGGGTCACTTGC back to topCoding sequence (CDS) from alignment at P-lacustris_contig108:9255..15502+ >mRNA_P-lacustris_contig108.675.1 ID=mRNA_P-lacustris_contig108.675.1|Name=mRNA_P-lacustris_contig108.675.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3588bp|location=Sequence derived from alignment at P-lacustris_contig108:9255..15502+ (Pleurocladia lacustris SAG_25_93) ATGCCGACATCACAATCGCGTGCATCAAGAAGCGACCACCTAGCTGAGCG GCACCCGGACCGACATGACTGCAGGGGGGGTGCCGAGGAAGAGACAGCAA GACGAGCTTTTTCACGAAGCCAAGACCTACCCCAAGACCCTGCCTTCGAT GCGCCCCCGCCCCAGGCGTCGCCTGTCGCCGCAAGCGCGCTCTGCAGGGT ATTCACCTTCCTAAGAAACTCGTGCGTAGGGTGCCCGGCCAACAACCGCG CCCTTCGCCACACCGGGCTCGCAGAAGCGGCGAGTGCTATGCCGACATCA CAATCGCGTGCATCAAGAAGCGACCACCTAGCTGAGCGGCACCCGGACCG ACATGACTGCAGGGGGGGTGCCGAGGAAGAGACAGCAAGACGAGCTTTTT CACGAAGCCAAGACCTACCCCAAGACCCTGCCTTCGATGCGCCCCCGCCC CAGGCGTCGCCTGTCGCCGCAAGCGCGCTCTGCAGGGTATTCACCTTCCT AAGAAACTCGTGCGTAGGGTGCCCGGCCAACAACCGCGCCCTTCGCCACA CCGGGCTCGCAGAAGCGGCGAGTGCTGCACTTCAATTCGCCGTCGATCAA GCTCCGTTTGCCTGCGGGGCTGCGACCTCTCACCCCGCCGCCACGATGGA TTGCAATAGGGGGCACTTCAATTCGCCGTCGATCAAGCTCCGTTTGCCTG CGGGGCTGCGACCTCTCACCCCGCCGCCACGATGGATTGCAATAGGGGGG TGGGGGGCACGTCCGATGTCAGGCTTGCCGTGCGAGCTGGCCTCCAGTTC GCCTGCAACTACTGCGTGGGCGGCGAGGAGAACAAGGCCTTGCTGTGGGC CGACTGGTTCCCTCGGGGTCTAATGGGTGGGGGGCACGTCCGATGTCAGG CTTGCCGTGCGAGCTGGCCTCCAGTTCGCCTGCAACTACTGCGTGGGCGG CGAGGAGAACAAGGCCTTGCTGTGGGCCGACTGGTTCCCTCGGGGTCTAA TGGAGCTGGTGAACGGCCTCAAGACGGACCGCGGCTTGCTCTCTCTCGCG GTGGCGTTGATACACACTTGCTGCGCCTCGCCCCCGCCGTGCGAGGGAAG AGGGGACGGTTGTGGCGACCGAGGAAGTACAGCAGAACACGGGGAAGGGA TAGGAGCGGAGAGGGAGACGGGGAAGGAAGAAGAAGGGGGAGGACGAGAA AGACTCGGGCGCCTGGTGGCAGACAGGGCGTTTTGCTGTCTCCTTGTCAA GGAGCTGGTGAACGGCCTCAAGACGGACCGCGGCTTGCTCTCTCTCGCGG TGGCGTTGATACACACTTGCTGCGCCTCGCCCCCGCCGTGCGAGGGAAGA GGGGACGGTTGTGGCGACCGAGGAAGTACAGCAGAACACGGGGAAGGGAT AGGAGCGGAGAGGGAGACGGGGAAGGAAGAAGAAGGGGGAGGACGAGAAA GACTCGGGCGCCTGGTGGCAGACAGGGCGTTTTGCTGTCTCCTTGTCAAG GTTGTTGTCCCTCGAAGCGCGAGCAACAGCGTAGTCGGCGAACTCGATCA CGATCCCGCCCGAGAGTGGCTATACCTGCTGTTCTGCAGTTTGGTCCAGG AGGGCTTGTGCCGCGACGTTTTTGACAACGTGGGCATTCGGGCGGGGGGG AGACAACGGCAGCCACGGCCGCGGCGTCCACAAAGTGGAGGCGCAGTTGT AGAGCCAAGTACGGAAGAGATGGTTGTCGAGCGGAGAGAGGAAGGGCATG ACGCCGTGGACGTTGGCGGCAGCGCCCGTGTCTCGACGGGCGCCGCTGGA TTGGAGGGCCTGGATGGAAAGGAGCGGAAAGGGGGACGTGGGGACGAAGA AGCGGAAGCGGAAGAGGACGACTTTTTCTTTCCTGTGACGCCTGAGCAGC TCATTGTGCTAAACCTGGCGGAAATCGCAGCGGGTTGTTGTCCCTCGAAG CGCGAGCAACAGCGTAGTCGGCGAACTCGATCACGATCCCGCCCGAGAGT GGCTATACCTGCTGTTCTGCAGTTTGGTCCAGGAGGGCTTGTGCCGCGAC GTTTTTGACAACGTGGGCATTCGGGCGGGGGGGAGACAACGGCAGCCACG GCCGCGGCGTCCACAAAGTGGAGGCGCAGTTGTAGAGCCAAGTACGGAAG AGATGGTTGTCGAGCGGAGAGAGGAAGGGCATGACGCCGTGGACGTTGGC GGCAGCGCCCGTGTCTCGACGGGCGCCGCTGGATTGGAGGGCCTGGATGG AAAGGAGCGGAAAGGGGGACGTGGGGACGAAGAAGCGGAAGCGGAAGAGG ACGACTTTTTCTTTCCTGTGACGCCTGAGCAGCTCATTGTGCTAAACCTG GCGGAAATCGCAGCGGCCGACGAGGCCGTGACAGGCGGCGAGCGCCCCAA CGCCCTACAACGCCAAGCGTGCGCGGCTCTGTTAGGATGGCTGGCTGGGC TCCTCTCGGCGATGCCGCTCAGTCAGACCTTGCTCCCGCCGACCGACACC TCGCCGGTACCACCGGCGGTCAAGAAACCAGCGGCGGAGCTACCGCAACG AACGACACCATCACCAACATCGACGGAGGGGCAGAACGAGGATGTTGTTG TTGACGAAGTCTCCGATGTTGAAACGGAGCGAGTGCGGCGGAGCATGCGC GAGGAGGCGAGGTCCGCCACGCTAAGGGCGCTGGCGGCCCTGCTCTCGGG ATGCGGCGACGAAACCCGGCAACTCACCGCCGCGAAGGTGGCGACGAGTG CGTCGGCAGTAGCGATCGTGCCGTCGAAAGTGGCGGTAGAACCACCGCCG GCGACGGCAGGTTTCGTCGCTCAACATGCCCAAACAGCAGCAGAAGCAAA AGTTGTTGGTAGCATCGACGAAGATGCGAGCGCGGCAAGAGGGTGCCGCG GGCCCTTGGAGATGTCATCGGCCGCGGTAAGCCATCATCGCCAGAACAGC TACCACCGACGAAAGCTACGCAGATAGCCGACGAGGCCGTGACAGGCGGC GAGCGCCCCAACGCCCTACAACGCCAAGCGTGCGCGGCTCTGTTAGGATG GCTGGCTGGGCTCCTCTCGGCGATGCCGCTCAGTCAGACCTTGCTCCCGC CGACCGACACCTCGCCGGTACCACCGGCGGTCAAGAAACCAGCGGCGGAG CTACCGCAACGAACGACACCATCACCAACATCGACGGAGGGGCAGAACGA GGATGTTGTTGTTGACGAAGTCTCCGATGTTGAAACGGAGCGAGTGCGGC GGAGCATGCGCGAGGAGGCGAGGTCCGCCACGCTAAGGGCGCTGGCGGCC CTGCTCTCGGGATGCGGCGACGAAACCCGGCAACTCACCGCCGCGAAGGT GGCGACGAGTGCGTCGGCAGTAGCGATCGTGCCGTCGAAAGTGGCGGTAG AACCACCGCCGGCGACGGCAGGTTTCGTCGCTCAACATGCCCAAACAGCA GCAGAAGCAAAAGTTGTTGGTAGCATCGACGAAGATGCGAGCGCGGCAAG AGGGTGCCGCGGGCCCTTGGAGATGTCATCGGCCGCGGTAAGCCATCATC GCCAGAACAGCTACCACCGACGAAAGCTACGCAGATAG back to top
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