mRNA_P-lacustris_contig1079.674.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1079.674.1
Unique NamemRNA_P-lacustris_contig1079.674.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1079.674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1079contigP-lacustris_contig1079:70300..70820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size521
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1079.674.1prot_P-lacustris_contig1079.674.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1079 70386..70760 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815352.6345444-UTR-P-lacustris_contig1079:70299..703851622815352.6345444-UTR-P-lacustris_contig1079:70299..70385Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1079 70300..70385 +
1693493494.2209344-UTR-P-lacustris_contig1079:70299..703851693493494.2209344-UTR-P-lacustris_contig1079:70299..70385Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1079 70300..70385 +
1622815352.6569345-UTR-P-lacustris_contig1079:70760..708201622815352.6569345-UTR-P-lacustris_contig1079:70760..70820Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1079 70761..70820 +
1693493494.2409954-UTR-P-lacustris_contig1079:70760..708201693493494.2409954-UTR-P-lacustris_contig1079:70760..70820Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1079 70761..70820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815352.6469443-CDS-P-lacustris_contig1079:70385..707601622815352.6469443-CDS-P-lacustris_contig1079:70385..70760Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1079 70386..70760 +
1693493494.2310188-CDS-P-lacustris_contig1079:70385..707601693493494.2310188-CDS-P-lacustris_contig1079:70385..70760Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1079 70386..70760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1079.674.1

>prot_P-lacustris_contig1079.674.1 ID=prot_P-lacustris_contig1079.674.1|Name=mRNA_P-lacustris_contig1079.674.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=125bp
MAVQFFWRTQLRWYLHMGVISRRVAVLLFWAVTLLEEATIKKKWRNSGGI
PLPPTTAVKNGGKYTAITLKNVSLSYSSSRLFVLLLCWFYFCSGSVSVEP
LCVLLQGVARKIKHARGNPHGVTP*
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mRNA from alignment at P-lacustris_contig1079:70300..70820+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1079.674.1 ID=mRNA_P-lacustris_contig1079.674.1|Name=mRNA_P-lacustris_contig1079.674.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=521bp|location=Sequence derived from alignment at P-lacustris_contig1079:70300..70820+ (Pleurocladia lacustris SAG_25_93)
CCCCCCTCTCCCATCAATTTATACCCCGGGAGGCATACTTTAAAATCACA
AAGATATGTAGCACAATAAAAAAAATCACAAGCGTTATGGCGGTACAGTT
TTTTTGGCGGACACAGCTTCGGTGGTATCTCCATATGGGGGTAATTTCTC
GGCGGGTGGCTGTATTGCTTTTTTGGGCGGTTACGCTTTTGGAGGAGGCG
ACAATTAAAAAAAAATGGCGGAATTCGGGCGGTATACCGCTACCTCCCAC
CACGGCGGTAAAAAATGGCGGAAAATACACCGCCATAACGTTGAAAAATG
TTTCTCTTTCTTATTCGTCTTCTCGTCTTTTCGTTCTTCTTCTGTGTTGG
TTCTATTTTTGTTCTGGTTCCGTTTCCGTCGAACCTCTCTGCGTCCTGCT
TCAGGGTGTAGCGCGAAAAATCAAACATGCACGCGGGAACCCTCACGGGG
TAACCCCCTAAAATCCAATTCTCCCCTTTTCCTCTCCCATCACTACAATC
CGATAAATACACACGATGGCC
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Coding sequence (CDS) from alignment at P-lacustris_contig1079:70300..70820+

>mRNA_P-lacustris_contig1079.674.1 ID=mRNA_P-lacustris_contig1079.674.1|Name=mRNA_P-lacustris_contig1079.674.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=750bp|location=Sequence derived from alignment at P-lacustris_contig1079:70300..70820+ (Pleurocladia lacustris SAG_25_93)
ATGGCGGTACAGTTTTTTTGGCGGACACAGCTTCGGTGGTATCTCCATAT
GGGGGTAATTTCTCGGCGGGTGGCTGTATTGCTTTTTTGGGCGGTTACGC
TTTTGGAGGAGGCGACAATTAAAAAAAAATGGCGGAATTCGGGCGGTATA
CCGCTACCTCCCACCACGGCGGTAAAAAATGGCGGAAAATACACCGCCAT
AACGTTGAAAAATGTTTCTCTTTCTTATTCGTCTTCTCGTCTTTTCGTTC
TTCTTCTGTGTTGGTTCTATTTTTGTTCTGGTTCCGTTTCCGTCGAACCT
CTCTGCGTCCTGCTTCAGGGTGTAGCGCGAAAAATCAAACATGCACGCGG
GAACCCTCACGGGGTAACCCCCTAAATGGCGGTACAGTTTTTTTGGCGGA
CACAGCTTCGGTGGTATCTCCATATGGGGGTAATTTCTCGGCGGGTGGCT
GTATTGCTTTTTTGGGCGGTTACGCTTTTGGAGGAGGCGACAATTAAAAA
AAAATGGCGGAATTCGGGCGGTATACCGCTACCTCCCACCACGGCGGTAA
AAAATGGCGGAAAATACACCGCCATAACGTTGAAAAATGTTTCTCTTTCT
TATTCGTCTTCTCGTCTTTTCGTTCTTCTTCTGTGTTGGTTCTATTTTTG
TTCTGGTTCCGTTTCCGTCGAACCTCTCTGCGTCCTGCTTCAGGGTGTAG
CGCGAAAAATCAAACATGCACGCGGGAACCCTCACGGGGTAACCCCCTAA
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