mRNA_P-lacustris_contig1075.658.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1075.658.1
Unique NamemRNA_P-lacustris_contig1075.658.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1075.658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1075contigP-lacustris_contig1075:67740..68119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815349.163637-CDS-P-lacustris_contig1075:67739..678351622815349.163637-CDS-P-lacustris_contig1075:67739..67835Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1075 67740..67835 -
1693493492.1992307-CDS-P-lacustris_contig1075:67739..678351693493492.1992307-CDS-P-lacustris_contig1075:67739..67835Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1075 67740..67835 -
1622815349.1800232-CDS-P-lacustris_contig1075:68032..681191622815349.1800232-CDS-P-lacustris_contig1075:68032..68119Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1075 68033..68119 -
1693493492.2085276-CDS-P-lacustris_contig1075:68032..681191693493492.2085276-CDS-P-lacustris_contig1075:68032..68119Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1075 68033..68119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1075.658.1prot_P-lacustris_contig1075.658.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1075 67740..68119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1075.658.1

>prot_P-lacustris_contig1075.658.1 ID=prot_P-lacustris_contig1075.658.1|Name=mRNA_P-lacustris_contig1075.658.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=61bp
TGGRQEVSTLDICESGLWKFGRVFGGMVKEWSARHQIRCADYHPLHACVL
KTPGKEGNEV*
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mRNA from alignment at P-lacustris_contig1075:67740..68119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1075.658.1 ID=mRNA_P-lacustris_contig1075.658.1|Name=mRNA_P-lacustris_contig1075.658.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=380bp|location=Sequence derived from alignment at P-lacustris_contig1075:67740..68119- (Pleurocladia lacustris SAG_25_93)
ACAGGAGGGAGGCAGGAGGTTTCGACGCTCGATATCTGTGAGAGCGGGCT
GTGGAAGTTCGGTCGTGTTTTCGGCGGAATGGTCAAGGTGTGTGTTTTTC
GATACTGTAGCTCTGTCTTCGTTAATCCCGCCGCTTCCGGGATTGTCACG
CCAGAGTTACCTTTGATATCGTACGATGACACGAGGATACAGCCTGAGAC
GAGGCTCCACGACTGATTTATACATGGTTTTCGTCTACCCTCCGCTTCAT
GTGCTTCCCCATTATCTGTCGTTGCCAAACTCAGGAATGGTCGGCCCGGC
ACCAAATTAGATGCGCTGATTACCACCCCCTTCATGCTTGTGTTCTAAAG
ACGCCAGGGAAAGAGGGAAATGAGGTGTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1075:67740..68119-

>mRNA_P-lacustris_contig1075.658.1 ID=mRNA_P-lacustris_contig1075.658.1|Name=mRNA_P-lacustris_contig1075.658.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=366bp|location=Sequence derived from alignment at P-lacustris_contig1075:67740..68119- (Pleurocladia lacustris SAG_25_93)
ACAGGAGGGAGGCAGGAGGTTTCGACGCTCGATATCTGTGAGAGCGGGCT
GTGGAAGTTCGGTCGTGTTTTCGGCGGAATGGTCAAGACAGGAGGGAGGC
AGGAGGTTTCGACGCTCGATATCTGTGAGAGCGGGCTGTGGAAGTTCGGT
CGTGTTTTCGGCGGAATGGTCAAGGAATGGTCGGCCCGGCACCAAATTAG
ATGCGCTGATTACCACCCCCTTCATGCTTGTGTTCTAAAGACGCCAGGGA
AAGAGGGAAATGAGGTGTGAGAATGGTCGGCCCGGCACCAAATTAGATGC
GCTGATTACCACCCCCTTCATGCTTGTGTTCTAAAGACGCCAGGGAAAGA
GGGAAATGAGGTGTGA
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