mRNA_P-lacustris_contig1075.653.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1075.653.1
Unique NamemRNA_P-lacustris_contig1075.653.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1075.653.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.390e-8
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 3 
Query:  117 GKYAEADPLFLRAIEIGEKTLGPDHPNL 200
            GKYAEADPL+LRAIEIGEK LGPDHP+L
Sbjct:  169 GKYAEADPLYLRAIEIGEKMLGPDHPDL 196
[Close]
BLAST of mRNA_P-lacustris_contig1075.653.1 vs. uniprot
Match: D8LPW2_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW2_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 3.400e-8
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 3 
Query:  117 GKYAEADPLFLRAIEIGEKTLGPDHPNL 200
            GKY E DPL+LRAIEIGEKTLGPDHP L
Sbjct:   51 GKYDEGDPLYLRAIEIGEKTLGPDHPAL 78
[Close]
BLAST of mRNA_P-lacustris_contig1075.653.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 3.920e-8
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 3 
Query:  117 GKYAEADPLFLRAIEIGEKTLGPDHPNL 200
            GKYAEADPL+LRAIEIGE TLGPDHP L
Sbjct:  613 GKYAEADPLYLRAIEIGENTLGPDHPAL 640
[Close]
BLAST of mRNA_P-lacustris_contig1075.653.1 vs. uniprot
Match: A0A6H5L045_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L045_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.450e-7
Identity = 23/28 (82.14%), Postives = 27/28 (96.43%), Query Frame = 3 
Query:  117 GKYAEADPLFLRAIEIGEKTLGPDHPNL 200
            GKYAEADPL+LRAI+IG+K LGPDHP+L
Sbjct:   10 GKYAEADPLYLRAIDIGKKMLGPDHPDL 37
[Close]
BLAST of mRNA_P-lacustris_contig1075.653.1 vs. uniprot
Match: D8LLM3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM3_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 4.090e-7
Identity = 22/30 (73.33%), Postives = 26/30 (86.67%), Query Frame = 3 
Query:  111 AFGKYAEADPLFLRAIEIGEKTLGPDHPNL 200
            A G+  EADPL+LRAIE+GEK LGPDHP+L
Sbjct:    6 ALGEDTEADPLYLRAIEVGEKKLGPDHPDL 35
[Close]
BLAST of mRNA_P-lacustris_contig1075.653.1 vs. uniprot
Match: A0A7S3NLU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLU4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.310e-7
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 3 
Query:  117 GKYAEADPLFLRAIEIGEKTLGPDHPNL 200
            GKY EA PL+ RAIEIGEKTLGP+HPNL
Sbjct:   13 GKYNEAKPLYERAIEIGEKTLGPNHPNL 40
[Close]
BLAST of mRNA_P-lacustris_contig1075.653.1 vs. uniprot
Match: A0A6H5K2T5_9PHAE (PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T5_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 5.760e-6
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 3 
Query:  117 GKYAEADPLFLRAIEIGEKTLGPDHPNL 200
            GKYAEADPL LRA++IG+  LGPDHP+L
Sbjct:  554 GKYAEADPLILRAMDIGKSPLGPDHPDL 581
[Close]
BLAST of mRNA_P-lacustris_contig1075.653.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.080e-5
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 3 
Query:  123 YAEADPLFLRAIEIGEKTLGPDHPNL 200
            +   DPLFLRAIEIGEKTLGPDHP+L
Sbjct:  254 FTSQDPLFLRAIEIGEKTLGPDHPDL 279
[Close]
BLAST of mRNA_P-lacustris_contig1075.653.1 vs. uniprot
Match: D7G7P8_ECTSI (Peptidase-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P8_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 1.080e-5
Identity = 20/26 (76.92%), Postives = 24/26 (92.31%), Query Frame = 3 
Query:  117 GKYAEADPLFLRAIEIGEKTLGPDHP 194
            GKYAEADP++L AIEI +KT+GPDHP
Sbjct:   16 GKYAEADPVYLEAIEIQQKTIGPDHP 41
[Close]
BLAST of mRNA_P-lacustris_contig1075.653.1 vs. uniprot
Match: A0A6H5KSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC7_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.460e-5
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 3 
Query:  117 GKYAEADPLFLRAIEIGEKTLGPDHPNL 200
            GK+AEADPL+LRAIE+ EK LG DHP+L
Sbjct:  341 GKHAEADPLYLRAIEVAEKMLGRDHPDL 368
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1075.653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5K0C4_9PHAE1.390e-889.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPW2_ECTSI3.400e-885.71TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
D7G6W2_ECTSI3.920e-889.29NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5L045_9PHAE1.450e-782.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLM3_ECTSI4.090e-773.33Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
A0A7S3NLU4_9STRA4.310e-782.14Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A6H5K2T5_9PHAE5.760e-675.00PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=E... [more]
A0A6H5JUC1_9PHAE1.080e-580.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
D7G7P8_ECTSI1.080e-576.92Peptidase-like n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5KSC7_9PHAE1.460e-575.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1075contigP-lacustris_contig1075:4498..8581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionTPR repeat-containing protein
Ec32 orthologEc-27_001880.2
Exons2
Model size201
Cds size165
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1075.653.1prot_P-lacustris_contig1075.653.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1075 4534..8581 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815349.0306714-UTR-P-lacustris_contig1075:4497..45331622815349.0306714-UTR-P-lacustris_contig1075:4497..4533Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1075 4498..4533 -
1693493492.1231413-UTR-P-lacustris_contig1075:4497..45331693493492.1231413-UTR-P-lacustris_contig1075:4497..4533Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1075 4498..4533 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815349.0421643-CDS-P-lacustris_contig1075:4533..45821622815349.0421643-CDS-P-lacustris_contig1075:4533..4582Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1075 4534..4582 -
1693493492.137818-CDS-P-lacustris_contig1075:4533..45821693493492.137818-CDS-P-lacustris_contig1075:4533..4582Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1075 4534..4582 -
1622815349.0550857-CDS-P-lacustris_contig1075:8465..85811622815349.0550857-CDS-P-lacustris_contig1075:8465..8581Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1075 8466..8581 -
1693493492.1471295-CDS-P-lacustris_contig1075:8465..85811693493492.1471295-CDS-P-lacustris_contig1075:8465..8581Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1075 8466..8581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1075.653.1

>prot_P-lacustris_contig1075.653.1 ID=prot_P-lacustris_contig1075.653.1|Name=mRNA_P-lacustris_contig1075.653.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=55bp
RGGARGEAKRSCYRRESAPPRPPADGCIAQQPGGVVQHLASMLRRTLCSF
ERLR*
back to top

mRNA from alignment at P-lacustris_contig1075:4498..8581-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1075.653.1 ID=mRNA_P-lacustris_contig1075.653.1|Name=mRNA_P-lacustris_contig1075.653.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4084bp|location=Sequence derived from alignment at P-lacustris_contig1075:4498..8581- (Pleurocladia lacustris SAG_25_93)
CGAGGAGGCGCTAGAGGTGAAGCGAAAAGGTCTTGCTATCGAAGAGAGAG
TGCTCCCCCCAGACCACCCGCAGATGGCTGCATCGCTCAACAACCTGGCG
GGGTTGTTCAGCATTTGTTCCTCCGCCCACTTCCCGAAAGTTAGCCTCGC
CGAATCAATTTTGCTCTTTCCCGTCACGTAACAGGGTAAGTATGCTGAAG
CAGAGCCCCTCTATGAGCGGTCGCAAGCCATTCGAGAGAAGGTGTTGGGT
CCGGAGCATCCGGATGTGGCCCAGTCGCTCAACAACAGGGCGGAGTTGTT
GAGAGCGCAGGTGAGAGCCATCAGAAAATTCCAGGAAATTTCTTGTGGTG
TGAAGGCCATTGCTCAACAACAGGGCGCTGTTGTTGCAGAGCCAGGTGAG
AGCCAAACGATCCTTCTAGATGGTTCTTGAAAAGAATGTTCGTCCGCAGT
TCCACATCCGACCTCCACTAAATTACACCTTGCCACGCTGTCGGCTGTAT
TTCAGGGAAGTATAAGGAAGCCGAGCCGCTTTATGAGCGGTCACAGGCAA
TACGAGAGAAGGTGCTTGGTCCGGAGCACCCTGATGTGGCTCAGTCGCTC
AACAACAGGGCGGAGTTGTTGAAAGCGCAGGTGAGAGTCATCAGAAAATT
CCAGGAAAAATTTTGTGGTACCCGATAGATTTCAGGAGTGCTCAACAACA
GGGCGGTGTTGTTGAAGGCACAGGTGAGAGCAATCAGAAAATTCCAGGAA
ATTTCTTGTGGTACTCGAGAGGGGGCGGGGTTGCTGAAAGCGCAGGTGAG
AGTCATCAGAAAATTCCAGGAAAATTCTTGTGGTACCCGATAGATTTCAG
GAGTGCTCAGCAACAGGGCGGTGTTGTTGAAGGCACAGGTGAGAGCAATC
AGAAAATTCCAGGAAATTTCTTGTGGTAGCCGATAGGGGCGGGCTTGTTG
AAAGCGCAGGTGAGAGTCATCAGAAAATTCCAGGAAAATTCTTGTGGTGC
CCGATAGATTTCAGGAGTGCTCAACAACAGGGCGGGTTGTTGAGAAATGT
TCCTCCGCAGTCTGTTTCACCTTTCACACTGAAACACCACTCCTTCGTTA
CACGACGCTGCCATCGCATCCAGGGGAAATACACGGAAGCGGAACCGCTC
TACACACGAGCCGCTGCGATCAATGAGGCCGTTCTGGGCCCAGAACACCC
GAGAGTCGCAGCAGATCTCAACAACCGGGCGGGGTTGTTGAGCATTTGTT
CCTCCGTAATCAAAACAGCCTGTTGCGAGTAACCACACTGCTGTTGTGTT
TTCTTTCACACTTCAGGGCAAGTACGCCGAGGCCGAGCCACTGTACGCGC
GGTCACAGGCCATCCTAGAGAGGGTGCTTGGTCCAGAGCATCCGAATGTG
GCTTCATCCCTCAACAACCGGGCGGAGTTGTTAAGAGAGCAGGTGAGAGC
CGTCAGAATTTTCCTGGATTTTTCTTGTGGGTACTCGTGACCTTTACAGA
GCTCAACAACCGGGCGGAGTTGTTGAGAGCGCAGGTGAGAGCCATCAGAA
AATTCCAGGAAATTTCTTGTGGTGTGAAGGCCATTGCTCAACAACAGGGC
GGGGTTGTTGAGAGCACAGGTGAGAGCCACCAGATTTTTCCAGGAATTTT
CGTAGGGTCGACAATGTGGATGTATTGTTTCAATTCTGGTGAGGCGCGTC
CTTACCATAACCCACTGCATGCTACACAGGGCAAGTACGACGACGCCGAA
CCACTGCTTGAGCGGTCACAGACCATACGAGAGAAGGTGTTGGGTCCGGA
GCATCCAGATGTGGCCCAGTCGCTCAACAACAGGGCGGGGTTGTTCAGCA
TTTGTTCCTCCGCCCACTTCCCGAAAGTTAGCCTCGCCGAATCAATTTTG
CTCTTTCCCGTCACATAACAGGGTAAGTATGCTGAAGCAGAGCCCCTCTA
TGAGCGGTCGCAAGCCATTCGAGAGAAGGTGTTAGGTCCGGAGCATCCAG
ATGTGGCCCAGTCGCTCAACAACAGGGCGGGGTTGTTCAGCATTTGTTCC
TCCGCCCACTTCCCGAAAGTTAGCCTCGCCGAATCAATTTTGCTCTTTCC
CGTCACATAACAGGGTAAGTATGCTGAAGCAGAGCCCCTCTATGAGCGGT
CGCAAGCCATTCGAGAGAAGGTGTTGGGTCCGGGGCATCCGGATGTGGCC
CAGTCGCTCAACAACAGGGCGCGGTTGTTGAGCAGTTGTTCCTCCGCGGT
TCAACTCCACTAATTTTGACCAACACTTCCCACCATGGTGCTTTTCACTC
TGCTTCAGGGGAAGTACGCCGAGGCGGAGCCACTGTATGAGCGGTGCCAG
GCGATAGAAGAGAAGGTACTAGGTCCTGACCACCCAAGTTTGGCCACAAC
GCTCAACAACCGGGCGGGGTTGTTGGAGAGCCAGGTGAGAGCAATCAGAA
AATTCCAGGAAGTTTCTTGTGGTACCCGATAGATTCGGGAGTGCTCAACA
ACAGGGCGGGGTTGTTGAGAGCGCAGGTGAGAGTCATCAGAATTTTCCGG
GAAATTTCGCAGGGTTCACCCTTAATGGTGAATACTCTCAGTTTCTGGTG
GACTGCGCCCTCACAATATCCCTCTGCCTGCACGCAGGGGAAGTATGCTG
AAGCAGAGCCCCTCTATGAGCGGTCGCAAGCCATTCGAGAGAAGGTGCTG
GGTCCGGAGCATCCGGATGTGGCCCAGTCGCTCAACAACAGGGCGCGGTT
GTTGAGCAGTTGTTCCTCCGCGGTTCAACTCCACTAATTTTGACCAACAC
TTCCCACCATGGTGCTTTTCACTCTGCTTCAGGGGAAGTACGCCGAGGCG
GAGCCACTGTATGAGCGGTGCCAGGCGATAGAAGAGAAGGTACTAGGTCC
TGACCACCCAAGTTTGGCCACAACGCTCAACAACCGGGCGGGGTTGTTGG
AGAGCCAGGTGAGAGCAATCAGAAAATTCCAGGAAGTTTCTTGTGGTACC
CGATAGATTCGGGAGTGCTCAACAACAGGGCGGGGTTGTTGAGAGCGCAG
GTGAGAGTCATCAGAATTTTCCGGGAAATTTCGCAGGGTTCACCCTTAAT
GGTGAATACTCTCAGTTTCTGGTGGACTGCGCCCTCACAATATCCCTCTG
CCTGCACGCAGGGAAGTATGCTGAAGCAGAGCCCCTCTATGAGCGGTCGC
AAGCCATTCGAGAGAAGGTGCTGGGTCCGGAGCATCCGGATGTGGCCCAG
TCGCTCAACAACAGGGCGCGGTTGTTGAGCAGTTGTTCCTCCGCGGTTCA
ACTCCACTAATTTTGACCAACACTTCCCACCATGGTGCTTTTCACTCTGC
TTCAGGGGAAGTACGCCGAGGCGGAGCCACTGTATGAGCGGTGCCAGGCG
ATAGAAGAGAAGGTACTAGGTCCTGACCACCCAAGTTTGGCCACAACGCT
CAACAACCGGGCGGAGTTGTTAAGAGAGCAGGTGAGAGCCGTCAGAATTT
TCCTGGATTTTTCTTGTGGGTACTCGTGACCTTTACAGAGCTCAACAACC
GGGCGCTGTTGTTGGAGAGTCAGGTGAGAGCAATCAGAAAATTCCAGGAA
ATTTCTGGTGGTACCCGATAGGGGCGGGCTTGTTGAAAGCGCAGGTGAGA
GGCATCAGAAAATTCCAGGAAAATTCTTGTGGTACCCGATAGATTTCAGG
AGTGCTCAACAACCGGGCGGTGTTGTTGAGCATTTGTTCCTCCGCACTCA
ACTCCACTAGTTTTAACAACACTTGCCCCCGTCGTGTTTTTCCCTCATGC
TTCAGGGCAAGTACGCCGAAGCTGAGCCACTCTATGCGCGGTGTCAGGCG
ATTGAAGGGAAGGTTCTAGGCCCTGAGCACCCAAGTCTGGCCACAACGCT
CAACAACCGGGCGGTGTTGTTAAGAAAATGTTCGTCCGCGATTCTAGATC
CTACTTTTCATTGCAGTACGACTCTGTTGCGCTCTCCTCTACATTCCAGG
GCAAGTATGCTGAGGCGGACCCTCTGTTCCTTCGAGCGATTGAGATAGGA
GAAAAAACGCTAGGCCCTGACCATCCCAATCTTG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1075:4498..8581-

>mRNA_P-lacustris_contig1075.653.1 ID=mRNA_P-lacustris_contig1075.653.1|Name=mRNA_P-lacustris_contig1075.653.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=330bp|location=Sequence derived from alignment at P-lacustris_contig1075:4498..8581- (Pleurocladia lacustris SAG_25_93)
CGAGGAGGCGCTAGAGGTGAAGCGAAAAGGTCTTGCTATCGAAGAGAGAG
TGCTCCCCCCAGACCACCCGCAGATGGCTGCATCGCTCAACAACCTGGCG
GGGTTGTTCAGCATTTCGAGGAGGCGCTAGAGGTGAAGCGAAAAGGTCTT
GCTATCGAAGAGAGAGTGCTCCCCCCAGACCACCCGCAGATGGCTGCATC
GCTCAACAACCTGGCGGGGTTGTTCAGCATTTGGCAAGTATGCTGAGGCG
GACCCTCTGTTCCTTCGAGCGATTGAGATAGGGCAAGTATGCTGAGGCGG
ACCCTCTGTTCCTTCGAGCGATTGAGATAG
back to top