mRNA_P-lacustris_contig1074.651.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1074.651.1
Unique NamemRNA_P-lacustris_contig1074.651.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1074.651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1074contigP-lacustris_contig1074:58559..58912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size355
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815348.9933515-CDS-P-lacustris_contig1074:58558..589121622815348.9933515-CDS-P-lacustris_contig1074:58558..58912Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1074 58559..58912 +
1693493492.102798-CDS-P-lacustris_contig1074:58558..589121693493492.102798-CDS-P-lacustris_contig1074:58558..58912Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1074 58559..58912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1074.651.1prot_P-lacustris_contig1074.651.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1074 58559..58912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1074.651.1

>prot_P-lacustris_contig1074.651.1 ID=prot_P-lacustris_contig1074.651.1|Name=mRNA_P-lacustris_contig1074.651.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=118bp
YFNGDEQLERTTVCLNVGDNLCEATICVTGLRIHAQPPSVATATVLVRPS
SVFNGDKSLRATIVPFVSPEVIYTYIYIYIVVQSQFRTYHFGVALCVDLR
QVLRAAISARSPARLRPW
back to top

mRNA from alignment at P-lacustris_contig1074:58559..58912+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1074.651.1 ID=mRNA_P-lacustris_contig1074.651.1|Name=mRNA_P-lacustris_contig1074.651.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=354bp|location=Sequence derived from alignment at P-lacustris_contig1074:58559..58912+ (Pleurocladia lacustris SAG_25_93)
TATTTCAACGGTGATGAACAACTCGAGCGTACCACCGTCTGCCTCAACGT
AGGCGACAATTTATGCGAAGCCACCATCTGTGTCACCGGATTGCGAATTC
ACGCACAGCCGCCGTCCGTCGCGACGGCAACAGTTTTAGTGCGACCATCG
TCTGTTTTCAACGGAGACAAGAGTTTGAGAGCAACCATCGTGCCGTTTGT
TTCACCGGAGGTGATATATACATATATATATATATATATTGTAGTGCAGT
CACAGTTTCGAACGTACCACTTCGGTGTCGCGCTGTGTGTAGACCTTCGG
CAGGTGCTGCGAGCTGCCATATCGGCGCGGAGCCCAGCCCGTCTCCGCCC
GTGG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1074:58559..58912+

>mRNA_P-lacustris_contig1074.651.1 ID=mRNA_P-lacustris_contig1074.651.1|Name=mRNA_P-lacustris_contig1074.651.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=708bp|location=Sequence derived from alignment at P-lacustris_contig1074:58559..58912+ (Pleurocladia lacustris SAG_25_93)
TATTTCAACGGTGATGAACAACTCGAGCGTACCACCGTCTGCCTCAACGT
AGGCGACAATTTATGCGAAGCCACCATCTGTGTCACCGGATTGCGAATTC
ACGCACAGCCGCCGTCCGTCGCGACGGCAACAGTTTTAGTGCGACCATCG
TCTGTTTTCAACGGAGACAAGAGTTTGAGAGCAACCATCGTGCCGTTTGT
TTCACCGGAGGTGATATATACATATATATATATATATATTGTAGTGCAGT
CACAGTTTCGAACGTACCACTTCGGTGTCGCGCTGTGTGTAGACCTTCGG
CAGGTGCTGCGAGCTGCCATATCGGCGCGGAGCCCAGCCCGTCTCCGCCC
GTGGTATTTCAACGGTGATGAACAACTCGAGCGTACCACCGTCTGCCTCA
ACGTAGGCGACAATTTATGCGAAGCCACCATCTGTGTCACCGGATTGCGA
ATTCACGCACAGCCGCCGTCCGTCGCGACGGCAACAGTTTTAGTGCGACC
ATCGTCTGTTTTCAACGGAGACAAGAGTTTGAGAGCAACCATCGTGCCGT
TTGTTTCACCGGAGGTGATATATACATATATATATATATATATTGTAGTG
CAGTCACAGTTTCGAACGTACCACTTCGGTGTCGCGCTGTGTGTAGACCT
TCGGCAGGTGCTGCGAGCTGCCATATCGGCGCGGAGCCCAGCCCGTCTCC
GCCCGTGG
back to top