mRNA_P-lacustris_contig1074.650.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1074.650.1
Unique NamemRNA_P-lacustris_contig1074.650.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1074.650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1074contigP-lacustris_contig1074:52984..54168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size282
Cds size156
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1074.650.1prot_P-lacustris_contig1074.650.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1074 52984..54042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815348.9226775-CDS-P-lacustris_contig1074:52983..531041622815348.9226775-CDS-P-lacustris_contig1074:52983..53104Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1074 52984..53104 -
1693493492.0635953-CDS-P-lacustris_contig1074:52983..531041693493492.0635953-CDS-P-lacustris_contig1074:52983..53104Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1074 52984..53104 -
1622815348.9343278-CDS-P-lacustris_contig1074:54007..540421622815348.9343278-CDS-P-lacustris_contig1074:54007..54042Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1074 54008..54042 -
1693493492.0725696-CDS-P-lacustris_contig1074:54007..540421693493492.0725696-CDS-P-lacustris_contig1074:54007..54042Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1074 54008..54042 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815348.947246-UTR-P-lacustris_contig1074:54042..541681622815348.947246-UTR-P-lacustris_contig1074:54042..54168Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1074 54043..54168 -
1693493492.0881255-UTR-P-lacustris_contig1074:54042..541681693493492.0881255-UTR-P-lacustris_contig1074:54042..54168Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1074 54043..54168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1074.650.1

>prot_P-lacustris_contig1074.650.1 ID=prot_P-lacustris_contig1074.650.1|Name=mRNA_P-lacustris_contig1074.650.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=52bp
MPLVKQTMVKLVRAARPNTLRRAPSQSCRIPGRKRRSPNRRLGPGIQGRH
HG
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mRNA from alignment at P-lacustris_contig1074:52984..54168-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1074.650.1 ID=mRNA_P-lacustris_contig1074.650.1|Name=mRNA_P-lacustris_contig1074.650.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1185bp|location=Sequence derived from alignment at P-lacustris_contig1074:52984..54168- (Pleurocladia lacustris SAG_25_93)
GTGTTCGCTTTCGTTGAAACAGACGGGGCGGCGTTCGAGTTTTGTGCCGC
CTCCATTGGAACAGATGGTGGTCGCTCTCAAGTTAGATGCCCCCGTTGAA
ACAGACGGTGGCTGCGCTCAGGTTGTATGCCTCTGGTTAAACAGACGATG
GTTAAGCTAGTGTCATCGCCTCCGTTCGAACAGACTGGCGGCGCTGAGAG
GATCATCTTCATTGAAACAAAGGGTGGTTATCGAGATTTCGCACCCGTTG
GAAGAGACGGTGGAGGTGCTTGAAGGTTATGCCGCCTCCACTCAAACATA
TTGTGATCGAACTGAAGCTAGATGCTTCCGTTGAAACAGACGGTGGCTGT
GATCAAGGGCGTGCCTCCGTTAAAACAGACGATGTTACGCTGATATTGTC
GCCTCCGTTGAAACAGACGATGGTTGCGCTAAAACTGTTGCCGTTGAAAC
AGATGGCGGCCGCGCTTAAAAATTCGCCTCCGGTGAAAAAGACGGTGGCT
TCGCATAAATTGTTGCCTCCGTTGAAAAGGATGGTGGTTGCGCTCGAGTT
GTTCGCCTCCATTGAAACAGATGGTGATCGCGTTCAAGATAGATGCCCCG
TTGAAACAGACGGTGGCTGCGCTCCAGTGTATCCCTCCGTTGAAACAGAC
GATGGCTACAACGCTGATATTATCGCCTGCGTGGGAACAGACGGTGGTTG
TGCTAAAGCGGTTGCCGTTGAAACAGACGGCGCCTGACCTAGAATTCGCC
TCCGGTGAAACAGACTGTGGTCGCGCTCAAGCCGTTGCCTCCGTTGAAAC
AGACGGGGCCGCGATCAAGTTATTTGCCTCCTTCGAAACAGAAGGTGGTT
ACGCTCGAGTTGTCGAGTCGCTACGATTGATCTATTGCCCCCGTTGAAAC
AGCCGGTGGCTGCTTAGATTATCGTTAGCGGGTGAAGCTCCCTTTCTTAA
CGGTCCGTTACCTTTCTCCTCTACGCCGGGTTTCCTTTTTTTCCTGAGAA
GGTTTTTTTATTGGAGATACGAGTGTATGAGAACGACGACGGCTGCACAA
GAAGGAGGGGCGAGGAGAGCAGCCCGTCCCAACACCTTGCGACGAGCGCC
TTCTCAGTCATGCCGAATACCAGGGCGAAAACGAAGGAGCCCGAATCGGC
GCCTTGGTCCGGGAATTCAAGGCCGTCATCATGGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1074:52984..54168-

>mRNA_P-lacustris_contig1074.650.1 ID=mRNA_P-lacustris_contig1074.650.1|Name=mRNA_P-lacustris_contig1074.650.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=312bp|location=Sequence derived from alignment at P-lacustris_contig1074:52984..54168- (Pleurocladia lacustris SAG_25_93)
ATGCCTCTGGTTAAACAGACGATGGTTAAGCTAGTATGCCTCTGGTTAAA
CAGACGATGGTTAAGCTAGTGAGAGCAGCCCGTCCCAACACCTTGCGACG
AGCGCCTTCTCAGTCATGCCGAATACCAGGGCGAAAACGAAGGAGCCCGA
ATCGGCGCCTTGGTCCGGGAATTCAAGGCCGTCATCATGGAGAGAGCAGC
CCGTCCCAACACCTTGCGACGAGCGCCTTCTCAGTCATGCCGAATACCAG
GGCGAAAACGAAGGAGCCCGAATCGGCGCCTTGGTCCGGGAATTCAAGGC
CGTCATCATGGA
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