mRNA_P-lacustris_contig1073.645.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1073.645.1
Unique NamemRNA_P-lacustris_contig1073.645.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1073.645.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 6.760e-58
Identity = 102/196 (52.04%), Postives = 138/196 (70.41%), Query Frame = 3 
Query:  231 RSYQNRAATIDFKDFQRGPNEEAFSDVKVASLHPVHLRPTFNMSDPPHIIKKIANACWHSDLDNKERELGMWRF-DKDELRLVRFSLKTAEKAYHHVENDGDTLTLEERAGSLTILRKLTASCFRRDSWNCMNVGMSAKVLGGTVVRALQQRERERVKRGETPDLASECYAELATKMNNFMDIFNGNFGRSDFARR 815
            RS+Q  AA + F  + +GP E +F+  KV  LHPVHL   FNMSDP HI+KKI NA WHSD+  K+R+LGMW   D+DEL+  +FSLKTA++ Y+ VE D D++T EERA +LTI   +    F R ++ CMNV +SAKV+ GT+VRA+++    +  RGE+PDLA  CY  LA  +N+F+DIFNG++GR+ F RR
Sbjct:  658 RSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLGMWCVTDQDELKFSQFSLKTAQRVYNDVEYDNDSMTPEERAATLTIFPGMPVGAFNRTNFTCMNVKLSAKVVSGTIVRAIREVRANQETRGESPDLALGCYEGLAVHLNDFVDIFNGDYGRTKFERR 853
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BLAST of mRNA_P-lacustris_contig1073.645.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 5.270e-55
Identity = 102/191 (53.40%), Postives = 128/191 (67.02%), Query Frame = 3 
Query:  315 VASLHPVHLRPTFNMSDPPHIIKKIANACWHSDLDNKERELGMWRFDKD-ELRLVRFSLKTAEKAYHHVENDGDTLTLEERAGSLTILRKLTASCFRRDSWNCMNVGMSAKVLGGTVVRALQQRERERVKRGETPDLASECYAELATKMNNFMDIFNG-----------------------NFGRSDFARR 815
            VA  HPVHL P FNMSDPPHI+KKIAN CWHSD D+K+REL MW  D++    LVRFSL TAE+ Y+ VENDG+TL+ EE+  S+T  RK+  SCF R+SWNCMNV  SAKVL GT+V  +++ +R+ +  G+  DL  +CYA LA KM+ F+DIFNG                       NFGRS++ARR
Sbjct:  370 VAFPHPVHLGPIFNMSDPPHILKKIANTCWHSDQDSKKRELAMWCGDEEGNTDLVRFSLATAERVYNQVENDGNTLSQEEKVASITTFRKVVPSCFNRNSWNCMNVSYSAKVLSGTIVCMIEKVQRDLLTMGKPLDLELDCYAALAAKMDAFIDIFNGKLYIIFVLAYCLVFLKQQMWWSGNFGRSEYARR 560
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BLAST of mRNA_P-lacustris_contig1073.645.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 6.380e-54
Identity = 96/186 (51.61%), Postives = 129/186 (69.35%), Query Frame = 3 
Query:  231 RSYQNRAATIDFKDFQRGPNEEAFSDVKVASLHPVHLRPTFNMSDPPHIIKKIANACWHSDLDNKERELGMWRF-DKDELRLVRFSLKTAEKAYHHVENDGDTLTLEERAGSLTILRKLTASCFRRDSWNCMNVGMSAKVLGGTVVRALQQRERERVKRGETPDLASECYAELATKMNNFMDIFNG 785
            RS+Q  AA + F  + +GP E +F+  KV  LHPVHL   FNMSDP HI+KKI NA WHSD+  K+R+LGMW   D+DEL+  +FSLKTA++ Y+ VE D D++T EER  +LTI   +    F R ++ CMNV +SAKV+ GT+VRA+++    +  RGE+PDLA  CY  LA  +N+F+DIFNG
Sbjct:  749 RSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLGMWCVTDQDELKFSQFSLKTAQRVYNDVEYDNDSMTPEERPATLTIFPGMPVGAFNRTNFTCMNVKLSAKVVSGTIVRAIREVRANQETRGESPDLALGCYEGLAVHLNDFVDIFNG 934
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BLAST of mRNA_P-lacustris_contig1073.645.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.310e-51
Identity = 97/189 (51.32%), Postives = 128/189 (67.72%), Query Frame = 3 
Query:  228 SRSYQNRAATIDFKDFQRGPNEEAFSDVKVASLHPVHLRPTFNMSDPPHIIKKIANACWHSDLDNKERELGMWRF-DKDELRLVRFSLKTAEKAYHHVENDGDTLTLEERAGSLTILRKLTASCFRRDSWNCMNVGMSAKVLGGTVVRALQQRERERVKRGETPDLASECYAELATKMNNFMDIFNGNF 791
            SRS+Q  AA   F  + +GP E +F+  KV  LHPVHL   FNMSDP HI+KKI NA WHSD+  K+R+LGMW   D+DEL+  +FSLKTA++ Y+ VE D +++T EERA +LTI   +  S F R ++ CMNV +SAKV+ GT+VRA+++    R  RGE PDLA  CY      +N+F+DIFN  F
Sbjct:  555 SRSFQTHAAISGFCRWIKGPQEGSFTSFKVGILHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLGMWCVTDQDELKFSQFSLKTAQRVYNDVEYDNNSITPEERAATLTIFPGMPVSAFNRTNFTCMNVKLSAKVVSGTIVRAIREVRANRETRGEPPDLALGCYEG---HLNDFVDIFNAAF 740
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BLAST of mRNA_P-lacustris_contig1073.645.1 vs. uniprot
Match: D8LK65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK65_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 2.600e-26
Identity = 62/147 (42.18%), Postives = 86/147 (58.50%), Query Frame = 3 
Query:  216 GFAASRSYQNRAATIDFKDFQRGPN--EEAFSDVKVASLHPVHLRPTFNMSDPPHIIKKIANACWHSDLDNKERELGMWRFDK--DELRLVRFSLKTAEKAYHHVENDGDTLTLEERAGSLTILRKLTASCFRRDSWNCMNVGMSAK 644
            G A  RS+Q   A I F ++ RG +  E+   D KVA  HP H  P FNMSDP H++KK+ NA WHSD+ +K+R+L    +++  ++   V FSLKT EK +   E  G   ++ E+A  L    K     F R+S NCM+VG+SAK
Sbjct:  115 GAAEHRSFQKYLAEIAFSEWARGDSAFEKRMGDFKVAFKHPSHGGPVFNMSDPVHLLKKVVNALWHSDIPSKQRDLKKLWYNEAAEDYEWVSFSLKTLEKVWKEEEAGGGVRSVAEQAAHLIRFLKFDPEMFTRNSHNCMSVGLSAK 261
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BLAST of mRNA_P-lacustris_contig1073.645.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 5.240e-16
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 3 
Query:  231 RSYQNRAATIDFKDFQRGPNEEAFSDVKVASLHPVHLRPTFNMSDPPHIIKKIANACWHSDLDNKERELGMW 446
            RS+Q RAAT++F  F +G +EE+FS+  VA  H VHL P FN+SDPPH++KKIAN  WHSDL    R+ G +
Sbjct:  317 RSFQLRAATVEFSAFAQGDDEESFSNFPVALRHSVHLGPMFNVSDPPHLVKKIANTLWHSDLTGAIRDDGTY 388
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1073.645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FZI2_ECTSI6.760e-5852.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JR14_9PHAE5.270e-5553.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF4_9PHAE6.380e-5451.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5M0_9PHAE1.310e-5151.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK65_ECTSI2.600e-2642.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRH8_9PHAE5.240e-1655.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1073contigP-lacustris_contig1073:41937..43300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size905
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1073.645.1prot_P-lacustris_contig1073.645.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1073 42293..43276 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815348.6418936-UTR-P-lacustris_contig1073:41936..422921622815348.6418936-UTR-P-lacustris_contig1073:41936..42292Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1073 41937..42292 +
1693493491.8680732-UTR-P-lacustris_contig1073:41936..422921693493491.8680732-UTR-P-lacustris_contig1073:41936..42292Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1073 41937..42292 +
1622815348.6942544-UTR-P-lacustris_contig1073:43276..433001622815348.6942544-UTR-P-lacustris_contig1073:43276..43300Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1073 43277..43300 +
1693493491.9157047-UTR-P-lacustris_contig1073:43276..433001693493491.9157047-UTR-P-lacustris_contig1073:43276..43300Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1073 43277..43300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815348.6543498-CDS-P-lacustris_contig1073:42292..425801622815348.6543498-CDS-P-lacustris_contig1073:42292..42580Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1073 42293..42580 +
1693493491.8844163-CDS-P-lacustris_contig1073:42292..425801693493491.8844163-CDS-P-lacustris_contig1073:42292..42580Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1073 42293..42580 +
1622815348.670751-CDS-P-lacustris_contig1073:42877..430161622815348.670751-CDS-P-lacustris_contig1073:42877..43016Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1073 42878..43016 +
1693493491.8956017-CDS-P-lacustris_contig1073:42877..430161693493491.8956017-CDS-P-lacustris_contig1073:42877..43016Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1073 42878..43016 +
1622815348.6810596-CDS-P-lacustris_contig1073:43178..432761622815348.6810596-CDS-P-lacustris_contig1073:43178..43276Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1073 43179..43276 +
1693493491.9057808-CDS-P-lacustris_contig1073:43178..432761693493491.9057808-CDS-P-lacustris_contig1073:43178..43276Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1073 43179..43276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1073.645.1

>prot_P-lacustris_contig1073.645.1 ID=prot_P-lacustris_contig1073.645.1|Name=mRNA_P-lacustris_contig1073.645.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=175bp
MSDPPHIIKKIANACWHSDLDNKERELGMWRFDKDELRLVRFSLKTAEKA
YHHVENDGDTLTLEERAGSLTILRKLTASCFRRDSWNCMNVGMSAKVLGG
TVVRALQQRERERVKRGETPDLASECYAELATKMNNFMDIFNGNFGRSDF
ARRKASTSTKATSHRQMIRSWRSS*
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mRNA from alignment at P-lacustris_contig1073:41937..43300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1073.645.1 ID=mRNA_P-lacustris_contig1073.645.1|Name=mRNA_P-lacustris_contig1073.645.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1364bp|location=Sequence derived from alignment at P-lacustris_contig1073:41937..43300+ (Pleurocladia lacustris SAG_25_93)
CACACGTTTATGACTCTCTCGGTTGATTTGCTTTCTCGAGGCCAACCGCA
CCCATTCCTCACCTACGGGCGGACGATGATTTGTAGTCTGATGGAAAAGC
CGCCGCACGAAAACTCCGCGCTGACGCCACGACTGGGTTGGCCCCTCCGC
CATCCACCTGACATACAAACCCCATCCCTTCGCACTCTTGGCCCTCCCCT
CGCTCCCCGTCCCATGGTTTCGCCGCTAGCCGTTCCTACCAGAACCGCGC
CGCCACAATCGACTTCAAGGACTTCCAAAGAGGACCGAACGAGGAGGCCT
TTTCGGACGTCAAGGTCGCGTCCCTGCATCCTGTCCACCTTCGACCAACG
TTCAACATGAGCGACCCTCCCCACATTATTAAGAAGATAGCCAACGCGTG
CTGGCACAGTGACCTGGACAACAAAGAACGAGAACTGGGGATGTGGCGCT
TCGACAAGGACGAATTGCGGTTGGTCCGTTTCTCGCTGAAGACCGCAGAG
AAGGCGTACCACCACGTCGAGAACGACGGCGACACCCTGACACTCGAGGA
ACGAGCGGGCTCCCTTACGATCCTCCGCAAGCTCACGGCGAGCTGCTTCC
GCAGGGACAGCTGGAACTGCATGAATGTGGGAATGTCTGCCAAGGTGATT
AACCGCTCTTTCGTGCGTAGTCCTAGAACATGTGTGTGATTTGGCGATAA
ATATACGGCGCGTGATCCGTAGTAGGTACGTGAATGCGGTGTCGTCCACA
TTGCCCTTGCAATGAGGTCCCCCCTGGCGTGGAGTTAGTTGCAGCGGACA
CTCGAAACCCGAATGCATGACACCCAATGGAGACGGCCACCATTGGTCTG
TGTGGAAAATAATTTGGTGTGACTCAAGGCGCGTCCTACCTTCCCACCTC
CTATCCTAAGCCATTGCATGTTCTGCCCATCGATGCTCCAGGTACTAGGG
GGGACGGTGGTCCGTGCACTCCAGCAGAGGGAGCGCGAACGCGTGAAGAG
GGGAGAAACCCCTGATCTGGCGTCGGAGTGCTACGCTGAACTTGCCACGA
AGATGAACAACTTTATGGATATCTTCAACGGCAAGTGCAACGGCTTAGTC
TCGAGTAGGTACAGAGATTTGTGGTGTGATCACATCTTGTGAAGCAACGT
CATCATCGCGACAAGGGCACCCAGTAGGCGTCGTCTATTCTCCTTCCACA
AGCTTCGCTCCACTAAACGACAACGAACCAAAACATGCACAGGTAACTTC
GGCCGGTCGGACTTCGCGCGCCGGAAGGCGTCGACAAGCACAAAGGCTAC
ATCACATCGGCAGATGATCCGAAGCTGGAGGAGCTCATGAACATCATGCG
TTTTTTCGACGATT
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Coding sequence (CDS) from alignment at P-lacustris_contig1073:41937..43300+

>mRNA_P-lacustris_contig1073.645.1 ID=mRNA_P-lacustris_contig1073.645.1|Name=mRNA_P-lacustris_contig1073.645.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1050bp|location=Sequence derived from alignment at P-lacustris_contig1073:41937..43300+ (Pleurocladia lacustris SAG_25_93)
ATGAGCGACCCTCCCCACATTATTAAGAAGATAGCCAACGCGTGCTGGCA
CAGTGACCTGGACAACAAAGAACGAGAACTGGGGATGTGGCGCTTCGACA
AGGACGAATTGCGGTTGGTCCGTTTCTCGCTGAAGACCGCAGAGAAGGCG
TACCACCACGTCGAGAACGACGGCGACACCCTGACACTCGAGGAACGAGC
GGGCTCCCTTACGATCCTCCGCAAGCTCACGGCGAGCTGCTTCCGCAGGG
ACAGCTGGAACTGCATGAATGTGGGAATGTCTGCCAAGATGAGCGACCCT
CCCCACATTATTAAGAAGATAGCCAACGCGTGCTGGCACAGTGACCTGGA
CAACAAAGAACGAGAACTGGGGATGTGGCGCTTCGACAAGGACGAATTGC
GGTTGGTCCGTTTCTCGCTGAAGACCGCAGAGAAGGCGTACCACCACGTC
GAGAACGACGGCGACACCCTGACACTCGAGGAACGAGCGGGCTCCCTTAC
GATCCTCCGCAAGCTCACGGCGAGCTGCTTCCGCAGGGACAGCTGGAACT
GCATGAATGTGGGAATGTCTGCCAAGGTACTAGGGGGGACGGTGGTCCGT
GCACTCCAGCAGAGGGAGCGCGAACGCGTGAAGAGGGGAGAAACCCCTGA
TCTGGCGTCGGAGTGCTACGCTGAACTTGCCACGAAGATGAACAACTTTA
TGGATATCTTCAACGGTACTAGGGGGGACGGTGGTCCGTGCACTCCAGCA
GAGGGAGCGCGAACGCGTGAAGAGGGGAGAAACCCCTGATCTGGCGTCGG
AGTGCTACGCTGAACTTGCCACGAAGATGAACAACTTTATGGATATCTTC
AACGGTAACTTCGGCCGGTCGGACTTCGCGCGCCGGAAGGCGTCGACAAG
CACAAAGGCTACATCACATCGGCAGATGATCCGAAGCTGGAGGAGCTCAT
GAGTAACTTCGGCCGGTCGGACTTCGCGCGCCGGAAGGCGTCGACAAGCA
CAAAGGCTACATCACATCGGCAGATGATCCGAAGCTGGAGGAGCTCATGA
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