mRNA_P-lacustris_contig1071.634.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1071.634.1
Unique NamemRNA_P-lacustris_contig1071.634.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1071.634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1071contigP-lacustris_contig1071:4259..4627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815345.9789312-CDS-P-lacustris_contig1071:4258..46271622815345.9789312-CDS-P-lacustris_contig1071:4258..4627Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1071 4259..4627 +
1693493490.4114153-CDS-P-lacustris_contig1071:4258..46271693493490.4114153-CDS-P-lacustris_contig1071:4258..4627Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1071 4259..4627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1071.634.1prot_P-lacustris_contig1071.634.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1071 4259..4627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1071.634.1

>prot_P-lacustris_contig1071.634.1 ID=prot_P-lacustris_contig1071.634.1|Name=mRNA_P-lacustris_contig1071.634.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=123bp
AEYHTPAPRRQVCTCRFFADIPTKISTKTSTQFVDFDIDYIDAMYTSIDW
MNRFRFTTLSKSLMAYRMRPKYICQNHTQAGFPAGLWAAHELHMINGLLL
GEWNVQFKFIRRLHLTTPETHV*
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mRNA from alignment at P-lacustris_contig1071:4259..4627+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1071.634.1 ID=mRNA_P-lacustris_contig1071.634.1|Name=mRNA_P-lacustris_contig1071.634.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=369bp|location=Sequence derived from alignment at P-lacustris_contig1071:4259..4627+ (Pleurocladia lacustris SAG_25_93)
GCGGAGTATCATACCCCCGCTCCCCGCCGACAAGTTTGCACGTGCCGATT
TTTTGCCGATATACCAACCAAAATATCGACAAAAACATCGACCCAATTTG
TCGATTTCGATATCGATTACATCGATGCCATGTACACCAGTATTGACTGG
ATGAATCGGTTTCGATTCACAACCCTATCGAAAAGCCTAATGGCATACCG
CATGCGACCCAAATATATATGCCAAAATCATACCCAAGCAGGATTTCCTG
CCGGTCTGTGGGCGGCACACGAACTCCACATGATCAACGGTCTGCTGTTG
GGTGAATGGAATGTGCAGTTCAAATTCATCAGGCGACTTCACTTAACGAC
GCCGGAAACTCACGTGTAG
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Coding sequence (CDS) from alignment at P-lacustris_contig1071:4259..4627+

>mRNA_P-lacustris_contig1071.634.1 ID=mRNA_P-lacustris_contig1071.634.1|Name=mRNA_P-lacustris_contig1071.634.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=738bp|location=Sequence derived from alignment at P-lacustris_contig1071:4259..4627+ (Pleurocladia lacustris SAG_25_93)
GCGGAGTATCATACCCCCGCTCCCCGCCGACAAGTTTGCACGTGCCGATT
TTTTGCCGATATACCAACCAAAATATCGACAAAAACATCGACCCAATTTG
TCGATTTCGATATCGATTACATCGATGCCATGTACACCAGTATTGACTGG
ATGAATCGGTTTCGATTCACAACCCTATCGAAAAGCCTAATGGCATACCG
CATGCGACCCAAATATATATGCCAAAATCATACCCAAGCAGGATTTCCTG
CCGGTCTGTGGGCGGCACACGAACTCCACATGATCAACGGTCTGCTGTTG
GGTGAATGGAATGTGCAGTTCAAATTCATCAGGCGACTTCACTTAACGAC
GCCGGAAACTCACGTGTAGGCGGAGTATCATACCCCCGCTCCCCGCCGAC
AAGTTTGCACGTGCCGATTTTTTGCCGATATACCAACCAAAATATCGACA
AAAACATCGACCCAATTTGTCGATTTCGATATCGATTACATCGATGCCAT
GTACACCAGTATTGACTGGATGAATCGGTTTCGATTCACAACCCTATCGA
AAAGCCTAATGGCATACCGCATGCGACCCAAATATATATGCCAAAATCAT
ACCCAAGCAGGATTTCCTGCCGGTCTGTGGGCGGCACACGAACTCCACAT
GATCAACGGTCTGCTGTTGGGTGAATGGAATGTGCAGTTCAAATTCATCA
GGCGACTTCACTTAACGACGCCGGAAACTCACGTGTAG
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