mRNA_P-lacustris_contig1070.629.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1070.629.1
Unique NamemRNA_P-lacustris_contig1070.629.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1070.629.1 vs. uniprot
Match: A0A6H5KAR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAR1_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 5.250e-79
Identity = 127/169 (75.15%), Postives = 136/169 (80.47%), Query Frame = 3 
Query:   30 LAAVTITSAELADDFNIPKGWKMQDRYHGFRYEAVVGRGC--QSYAEAAQAAADELACFGWVQRTSPDTIAGEGRCSKATGQLMQERLRQGP-GETCKIIHFEAKDYEDTKIKLHFSHFKILDEERLTCFRDAPHQCPEFSAK-NTNADGDGDVVEADSCGEGGCAATA 524
            LA   + SAEL DDFNIPKGW+MQDRYHGFRYEA V +GC   +YAEAAQAAADELACFGWVQRTSP T+AGE RCSKATG+ MQ RLRQGP G  C ++ FE KDY DTKIKLHFSHFKILDEER TCFRD PHQCPEFSAK N  AD  G V   +SC EGGCAATA
Sbjct:   11 LALAPVVSAELVDDFNIPKGWRMQDRYHGFRYEATVDQGCLFDAYAEAAQAAADELACFGWVQRTSPSTMAGESRCSKATGEKMQGRLRQGPPGNGCDVVGFETKDYADTKIKLHFSHFKILDEERKTCFRDTPHQCPEFSAKKNPEADDAGFVAGLESCSEGGCAATA 179
[Close]
BLAST of mRNA_P-lacustris_contig1070.629.1 vs. uniprot
Match: D7G306_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G306_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 6.550e-37
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 3 
Query:   30 LAAVTITSAELADDFNIPKGWKMQDRYHGFRYEAVVGRGCQ--SYAEAAQAAADELACFGWVQRTSPDTIAGEGRCSKATGQLM 275
            LA V + SAELADDFNIPKGW+MQDRYHGFRYEA V +GC+  +YAEAAQAAADELACFGWVQRTSP+T+AGE RCSKATG+ M
Sbjct:   11 LALVPVVSAELADDFNIPKGWRMQDRYHGFRYEATVDQGCRFDAYAEAAQAAADELACFGWVQRTSPNTMAGESRCSKATGEKM 94
[Close]
BLAST of mRNA_P-lacustris_contig1070.629.1 vs. uniprot
Match: A0A7S2WHN9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WHN9_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.320e-36
Identity = 73/145 (50.34%), Postives = 90/145 (62.07%), Query Frame = 3 
Query:   33 AAVTITSAELADDFNIPKGWKMQDRYHGFRYEAVVGRGCQSYAEAAQAAADELACFGWVQRTSPDTIAGEGRCSKATGQLMQERLRQGPGETCKIIHFEAKDYEDTKIKLHFSHFKILDEERLTCFRDAPHQCPEFSAKNTNADG 467
            AAV      L   F+ P GW+M DR+ GFRYEA        Y+EAA   A+ L CFGW Q T+  ++ GE RC+K+   +M+E L QG  E+ ++     KDYE+TKIKLHFSHFKIL EER TCFRD PHQC EF   N  + G
Sbjct:    6 AAVGAGEEPLDVAFDGPPGWRMVDRFAGFRYEAQGSVVSVGYSEAAAVKAEALGCFGWAQSTARGSVVGEARCAKSVAPVMKEWLEQGNPES-RVDSVTFKDYENTKIKLHFSHFKILPEERETCFRDPPHQCAEFQEPNGGSSG 149
[Close]
BLAST of mRNA_P-lacustris_contig1070.629.1 vs. uniprot
Match: A0A7S2FNY1_9STRA (Acylphosphatase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FNY1_9STRA)

HSP 1 Score: 133 bits (335), Expect = 7.830e-33
Identity = 65/127 (51.18%), Postives = 83/127 (65.35%), Query Frame = 3 
Query:   72 FNIPKGWKMQDRYHGFRYEA---VVGRGCQSYAEAAQAAADELACFGWVQRTSPDTIAGEGRCSKATGQLMQERLRQGPGETCKIIHFEAKDYEDTKIKLHFSHFKILDEERLTCFRDAPHQCPEFS 443
            F+ P GW+M DR+ GFRYE    V+G G   + +A    A +L CFGW Q T   T+ GE RC+K+    M+E L  GP ++ ++     KDYE+TKIKLHFSHFKIL +ER TCFRD PHQC EF+
Sbjct:   41 FDGPPGWRMVDRFAGFRYEVMGNVIGVG---FRQATSEKATQLGCFGWAQNTERGTVVGEVRCAKSVAPAMKEWLAAGPPKS-RVDEVTVKDYENTKIKLHFSHFKILPDERQTCFRDPPHQCAEFA 163
[Close]
BLAST of mRNA_P-lacustris_contig1070.629.1 vs. uniprot
Match: A0A836C8C1_9STRA (Acylphosphatase-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8C1_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.900e-32
Identity = 61/125 (48.80%), Postives = 81/125 (64.80%), Query Frame = 3 
Query:   69 DFNIPKGWKMQDRYHGFRYEAVVGRGCQSYAEAAQAAADELACFGWVQRTSPDTIAGEGRCSKATGQLMQERLRQGPGETCKIIHFEAKDYEDTKIKLHFSHFKILDEERLTCFRDAPHQCPEFS 443
            + N+P+GW+  DR++GFRYE         + +AA  AA+EL CFGW+Q +  +T+ GE RCSK  G  M E LR GP +  ++     K YEDTKIKLHF+ F  L +ER TCFR  PHQCPE++
Sbjct:   15 EVNVPRGWRKSDRFYGFRYEVRGLVQDVGFLQAAVHAAEELGCFGWIQNSKVNTVVGEARCSKLDGPKMVEFLRFGPDDA-RVTEVLVKPYEDTKIKLHFASFLALPDERKTCFRAIPHQCPEYA 138
[Close]
BLAST of mRNA_P-lacustris_contig1070.629.1 vs. uniprot
Match: A0A6U1NP13_9STRA (Acylphosphatase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NP13_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.980e-31
Identity = 65/154 (42.21%), Postives = 85/154 (55.19%), Query Frame = 3 
Query:   72 FNIPKGWKMQDRYHGFRYEAVVGRGCQSYAEAAQAAADELACFGWVQRTSPDTIAGEGRCSKATGQLMQERLRQGPGETCK-----------------------------IIHFEAKDYEDTKIKLHFSHFKILDEERLTCFRDAPHQCPEFSA 446
            ++ P+GW+M DR++GFR+E         + ++ Q AA+ L CFGWVQ T   T+ GEGRCSK  G L+   LR GP    +                             +   E K+YEDTKIKLHFSHFKIL + R+TCFRD PHQC EF++
Sbjct:   24 YSQPEGWRMVDRFYGFRFEVSGTVQDVGFRKSTQDAAEVLGCFGWVQNTDHGTVVGEGRCSKWNGPLLVGWLRAGPTAAAEAAAASEDENIAGSLVALANQLPRQAVGSLVTSVEVKEYEDTKIKLHFSHFKILPDTRVTCFRDPPHQCAEFAS 177
[Close]
BLAST of mRNA_P-lacustris_contig1070.629.1 vs. uniprot
Match: A0A7S3JVZ0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVZ0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.410e-28
Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = 3 
Query:   87 GWKMQDRYHGFRYEAVVGRGCQSYAEAAQAAADELACFGWVQRTSPDTIAGEGRCSKATGQLMQERLRQGPGETCKIIHFEAKDYEDTKIKLHFSHFKILDEERLTCFRD-APHQCPEF 440
            GW+M DR+ GFR+E         + EA +  ADELACFGW+Q +   T+ GE RC+KA G ++++ LR GP +   +      DY DTKIKLHFS+FKIL  +R+TCFR+  PHQC EF
Sbjct:   29 GWRMIDRFMGFRFEIQGQVQDIGFEEAVRDKADELACFGWIQESELGTMVGEARCAKAVGNILKDFLRMGP-DGADVEDANILDYPDTKIKLHFSYFKILTGDRVTCFREPGPHQCLEF 146
[Close]
BLAST of mRNA_P-lacustris_contig1070.629.1 vs. uniprot
Match: A0A7S4VH54_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VH54_9STRA)

HSP 1 Score: 115 bits (288), Expect = 5.990e-27
Identity = 56/122 (45.90%), Postives = 78/122 (63.93%), Query Frame = 3 
Query:   84 KGWKMQDRYHGFRYEAVVGRGCQSYAEAAQAAADELACFGWVQRTSPDTIAGEGRCSKATGQLMQERLRQGPGETCKIIHFEAKDYEDTKIKLHFSHFKILDEERLTCFRDAPHQCPEFSAK 449
            +GWKM DR+ GFRYE           E  +  AD+LACFGW + +  +T+ GE RC+K  G++M+  ++     T K+   + K+Y+DTKIKLHFSHFKI+ + R TCFRD PH+C +F  K
Sbjct:    9 EGWKMTDRFIGFRYEVYGNVKDIGIREKIKEKADKLACFGWARYSPQNTVVGEVRCNKNAGKVMKGWIKS---MTSKV---DLKEYDDTKIKLHFSHFKIIFDGRETCFRDEPHRCDQFKEK 124
[Close]
BLAST of mRNA_P-lacustris_contig1070.629.1 vs. uniprot
Match: A0A7S3ZVT6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVT6_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.760e-24
Identity = 55/116 (47.41%), Postives = 70/116 (60.34%), Query Frame = 3 
Query:   87 GWKMQDRYHGFRYEAVVGRGCQS-YAEAAQAAADELACFGWVQRTSPDTIAGEGRCSKATGQLMQERLRQGPGETCKIIHFEAKDYEDTKIKLHFSHFKILDEERLTCFRDAPHQC 431
            GW+M DR+ GFRYE       QS +  AA+  ADEL CFGW+Q +   T+ GE RC+K      +  LR+G   T ++   +  DY DTKIKLHFSHFK L  +R+TCF   PH C
Sbjct:   25 GWRMVDRFAGFRYEVKGPHVVQSGFHTAAEKLADELGCFGWIQDSEFRTVVGEARCAKTVADRFKAFLREGH-PTSEVEAVDIYDYPDTKIKLHFSHFKRLGSDRVTCFPAPPHAC 139
[Close]
BLAST of mRNA_P-lacustris_contig1070.629.1 vs. uniprot
Match: A0A5A8DMJ2_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DMJ2_CAFRO)

HSP 1 Score: 108 bits (269), Expect = 7.220e-24
Identity = 53/129 (41.09%), Postives = 74/129 (57.36%), Query Frame = 3 
Query:   75 NIPKGWKMQDRYHGFRYEAVVGRGCQSYAEAAQAAADELACFGWVQRTSPDTIAGEGRCSKATGQLMQERLRQGPGETCKIIHFEAKDYEDTKIKLHFSHFKILDEERLTCFRDAPHQCPEFSAKNTNA 461
            ++P GW+M+DR+ GFR+E        ++A   +  ADEL+ FGWVQ +   T+ GE R +K T   M+E L  GP E+        ++Y DTKI+ HFSHFK++D  R +CFR  PH C    A    A
Sbjct:   26 DVPAGWRMRDRFGGFRFECRGAFDRDAWALQVRDYADELSGFGWVQLSPVGTVVGEFRGTKQTAPWMREFLEAGPDESAAFA-CAVEEYPDTKIRFHFSHFKVMDPRRRSCFRKPPHACGPIDAAAAEA 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1070.629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KAR1_9PHAE5.250e-7975.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G306_ECTSI6.550e-3779.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WHN9_9STRA1.320e-3650.34Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FNY1_9STRA7.830e-3351.18Acylphosphatase n=1 Tax=Florenciella parvula TaxID... [more]
A0A836C8C1_9STRA1.900e-3248.80Acylphosphatase-like domain-containing protein n=2... [more]
A0A6U1NP13_9STRA3.980e-3142.21Acylphosphatase n=1 Tax=Fibrocapsa japonica TaxID=... [more]
A0A7S3JVZ0_9STRA1.410e-2849.58Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4VH54_9STRA5.990e-2745.90Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3ZVT6_9STRA2.760e-2447.41Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A5A8DMJ2_CAFRO7.220e-2441.09Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1070contigP-lacustris_contig1070:19134..26057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_004180.1
Exons5
Model size1665
Cds size462
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815345.360384-UTR-P-lacustris_contig1070:19133..192281622815345.360384-UTR-P-lacustris_contig1070:19133..19228Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1070 19134..19228 +
1693493490.0061913-UTR-P-lacustris_contig1070:19133..192281693493490.0061913-UTR-P-lacustris_contig1070:19133..19228Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1070 19134..19228 +
1622815345.4885743-UTR-P-lacustris_contig1070:24949..260571622815345.4885743-UTR-P-lacustris_contig1070:24949..26057Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1070 24950..26057 +
1693493490.0697148-UTR-P-lacustris_contig1070:24949..260571693493490.0697148-UTR-P-lacustris_contig1070:24949..26057Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1070 24950..26057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815345.3715687-CDS-P-lacustris_contig1070:19228..192341622815345.3715687-CDS-P-lacustris_contig1070:19228..19234Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1070 19229..19234 +
1693493490.0165617-CDS-P-lacustris_contig1070:19228..192341693493490.0165617-CDS-P-lacustris_contig1070:19228..19234Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1070 19229..19234 +
1622815345.3811443-CDS-P-lacustris_contig1070:20169..202321622815345.3811443-CDS-P-lacustris_contig1070:20169..20232Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1070 20170..20232 +
1693493490.026939-CDS-P-lacustris_contig1070:20169..202321693493490.026939-CDS-P-lacustris_contig1070:20169..20232Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1070 20170..20232 +
1622815345.3913481-CDS-P-lacustris_contig1070:21294..213941622815345.3913481-CDS-P-lacustris_contig1070:21294..21394Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1070 21295..21394 +
1693493490.0367925-CDS-P-lacustris_contig1070:21294..213941693493490.0367925-CDS-P-lacustris_contig1070:21294..21394Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1070 21295..21394 +
1622815345.4024034-CDS-P-lacustris_contig1070:22418..225401622815345.4024034-CDS-P-lacustris_contig1070:22418..22540Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1070 22419..22540 +
1693493490.046136-CDS-P-lacustris_contig1070:22418..225401693493490.046136-CDS-P-lacustris_contig1070:22418..22540Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1070 22419..22540 +
1622815345.4754047-CDS-P-lacustris_contig1070:24778..249491622815345.4754047-CDS-P-lacustris_contig1070:24778..24949Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1070 24779..24949 +
1693493490.0592835-CDS-P-lacustris_contig1070:24778..249491693493490.0592835-CDS-P-lacustris_contig1070:24778..24949Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1070 24779..24949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1070.629.1prot_P-lacustris_contig1070.629.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1070 19229..24949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1070.629.1

>prot_P-lacustris_contig1070.629.1 ID=prot_P-lacustris_contig1070.629.1|Name=mRNA_P-lacustris_contig1070.629.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=154bp
MQDRYHGFRYEAVVGRGCQSYAEAAQAAADELACFGWVQRTSPDTIAGEG
RCSKATGQLMQERLRQGPGETCKIIHFEAKDYEDTKIKLHFSHFKILDEE
RLTCFRDAPHQCPEFSAKNTNADGDGDVVEADSCGEGGCAATAVETAATA
TSL*
back to top

mRNA from alignment at P-lacustris_contig1070:19134..26057+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1070.629.1 ID=mRNA_P-lacustris_contig1070.629.1|Name=mRNA_P-lacustris_contig1070.629.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6924bp|location=Sequence derived from alignment at P-lacustris_contig1070:19134..26057+ (Pleurocladia lacustris SAG_25_93)
ATCGGCTTGTAGTGAGCCTCCTCTCGGCGCTGGCCGCTGTAACCATAACC
TCGGCAGAGCTTGCGGACGACTTTAACATCCCCAAGGGCTGGAAGATGCA
GGTGCGTGGGTGCGTGGGGCGTGTCTACGATCGGCTGTCTGATGCTGCTG
CGCTGCTGGGTTCGCTTGATTATTTTTGGTGTGCTACCGCTGTGCTCTTC
CGCTGTTGTTGGTGTGCGCTAGCCGGTAGACTTATGTAGCTCTCCTGGCA
ATGAGACGTCCCGATCTTTGCGACTAGCGCAATCAGGCAGACGCCTCGGA
GGTTGGATAAGATATGGGATTATTGCTGTACCATACCCACCTGTCCGAGC
TCGATTGCTCCGCACCAGAGAGGGGGACAGAGTGACGATGGGTTACTGGA
AGCCGAACATCCAGTCGCCAGAAAAGGCTCTCATCTCAACACTCAACTCT
CAGCCTGAACTGCGCGTTGGGAGTGGTGATGTGCATTCAGGTACAAAAGA
TTCTACGATGTACAGAGAGACCGGAGCGATAGAAAATCGTTCAAATAGAG
GGTGGTTTCTCATGCCACTCGCCTTCTCGGGTTGTAGTGTACTACAACTG
CAGTGTCTCGCAGGCTACAGTACGTACGCTATTGCACCTTCACCTGCTGG
TGTAGCTCCTGAGAGAATGAGCCAAATGGGTTAGACTACAATATATTTTG
ACGTCCTACCCGAGGGTACATTGTAGGGCATGTACGCGAGGAGGAGGGGG
GTGAGGACTGCGTTATCGCTGCATAGGCATAGCTTGGTATGCACACTTTC
TTCCATACCATACAAGGTAGTTGTTGCTGGAGCTGTCACTCGATCGATAT
CTCGACCTCGCACTTACTCTACGCTCTACCTTCCCCGCCCAGCCTCCTGT
CTCGCTCTCCCCTCTCTCTACTGCTGTGTGGGCGTTCCATATCTCCCTCC
TCCGTCCTGCCTCCCTTTTCCCTTATTCCAAACCCAATTGACACCCTCTC
ATAAAATGTATTTTTCGATGAAACGGCACTCTTCAGGATCGATATCACGG
CTTCCGATACGAGGCGGTGGTTGGTCGAGGCTGCCAGTCCTACGCTGAGG
TTCGTTTGAAATGCGTTACTCTTTTTCGTGCTATTTCATCGTTTCACGAG
ATTGATTGATTTCTCGATGCCTGCCCTGCCCTGCTATAAAACTGTCGTGA
ACCTTAACTGTGCTTGTACCACGCGGCGTCGTGACGGCCTCCTGCCCTTT
CGAGACTCATGTACCAGTGGCGGGACTGTCTGACATGTATTTTCTCTCTC
TCTCTCTCTTTTTTATTTTTTTGTATCTAACCGTCGCGCAGCTTCTACTT
TCTTTCCTTACCCTACGGACTTATCTTCTCTGTTTACCCCAGCAGCTCCG
ATTCGGGGTTGGGGTTCCTCGTGTACCTTATCTTGGGTTAAAGCGAATGG
CCACGCAATTCGTCCCTCTTTCCTTCGAAGAGTGCGGAGAGGGGATCCAC
GTATTGATGGATCAGGATGGCTTGCGCGTTCGAGACAGAAGCAACACTCT
TTGATCGCTTCGTTTGGTCCGCCTGTACTTGGGCCTGACCCTGACGCCGG
GCTGCTTTTGACTTTTGAACGAATAACGCACGCAACCTGTGGATGGTTTC
GTCTTGTGTTGTATTAGATGGGCTTGGGCTAGTTTTGCCTTTTCAAGCGT
CTTATTTCTGTGTCCTGAATGGCACATTTTGCAGTTGCTGTAGTTCTGCT
GGAAAGCCTAGCGTAACTCGACCAGGCACAAACGCAAACGGCATAGTAGT
ACGGCTTTGCGGCGCTATGGTGTGATCCGTCTTTTACTATGTGCGCTGGT
GTTGTTGGCGTTGTCGGTGGTAGAGGCGGTGGGTGGTGGTGTCATTGTCT
CCGCAGCAACTGGCCACCTGGACTTACAAATTAGCTGGTACGTGGTGCCT
AGCACCCTCATTTCGTGACCAGACTCTCACGATGAAGTCAAGACTAGCCA
ATATAAATTCATCTTTTTGTTTTAGCACGAAAACAACGAAACGACCTCAG
GGAAATGAAAAAAATGCCTCAGTAGAACAGGTCTTCCCACTGTTGTTTCC
GGCGATCAATTCCGTTGGCCAATCTCACAGCCTCTGTCCCCCTGTCCACA
TGTCTTCACAGGCTGCCCAAGCAGCGGCGGACGAGCTGGCCTGCTTCGGA
TGGGTGCAACGGACGTCGCCCGACACCATCGCGGGCGAAGGCCGCTGCTC
GAAAGCCACCGGTTAGTGATGAGCAGTTAGTGAACAGCCAGACCCGCCGG
CTGTAACTGAACGATGGTTTCTCTGCGAGATTCGAATACGTAGCCTCGCC
CCGACTGCTTGATAATGCTTGTCTCTCTCCCTTTCGTGTTGCAACGCTAC
CGTTAAAGCTACCGTTGGAGCTCAGGAGAAAGCTGTGCCCGGTTCACGTT
CCTTCATGTTTTCTAGCCTCCTTTCCGTGGGCTGTGGGTGGGGTGTGGCG
TATGAAGGAGGGGTGGAGCCTTAATCAACCTCCGCCGACCTTTGGTCACG
AGAAGGCGGCCCAGCTTGCTCCTCTTGATGGGGGTGGGGATGGGGGCTCC
GTGTTGGAAGCTAGTGCTCTCGCTGGCCAGGGGCGCGAAACACCAGAAAC
ACCATGCCATGCGACACACATGGCGGACCACCCGGACGTAGCCCATCCAA
TGGCAACTTGTCCTTACAAACACTTGTCGCCAAGACTAGAAGTAAGATTT
TGTCGTTGTGTTGTTGTGTGTGTCAGGCAACTACGATTTTTTTTTTTTTT
GCTATCGGAAGAACTTTGTTTCTTCCTGCCCCACAGTCGAGCCCCGGATC
TGGGGTCACACGTGAGGGTCATTCTATCGCGAGGAGGACTAGCTCTGCGC
TACTAGGTACGATAGTTGTGAGCGGGAACGTCGCTTCGGTCCTGCCTCCG
GTCTCCCTTGTATAGAGGCGTGCAGTGGTCTCGTGGCAGAATCGCCAAGG
AATGTTAACCGACCAAGCGTCCAGTGTCGTGTGGTACATCACCCATCGTG
GTAGACTTGATACGTAGCTCGCAGTTTGAGACGACCATCGCCTTTTTAAT
TGGCGATTGATCTCGTTGCTGTGGTTGCTGCTGACGATCACCTTACCGTC
ATCGGTGATGATCACCTCAATACTTGCCGCTTCGAACAAACAAGGCGGTA
AGCGACGAACCGTCGGTGTGCGACGATCTCTCCTTAGGGTGCGATGGTGA
GATACCCCCCGCTACCTGCCTGCCCCCTGAAACAGGTCAACTAATGCAAG
AACGCTTGCGCCAGGGTCCGGGGGAGACGTGCAAGATTATCCATTTCGAG
GCGAAAGACTACGAGGATACTAAGATCAAGCTGCATTTTTCTCACTTCAA
GATCCTTGTGAGTGTTGGGAGCGGGAGCTCGATATACGCACGTGTACTGA
TGGGCAGATACACAGGCAGACAGACGGGCGGACACAGAGAGTAAATTGAC
AGACTGACCAGACTCGCTCCTTGGGAAACCCATCGCTTCCTGAGAATGGT
CCTCCTTTCCAGGATTTTGAAGGGGTCAACCCCTGCACGACGGGTCAGGT
CAGGCTCGCCTGTCCTGTCATATCATATTTCTGAGGGCAGGCATGACCCG
TGGAAGGCCCTGCTTTTTTCCGGCTCTCGTCATGCAGCAGTTTTCGAATA
CATGTTGCACTCCTTCGCTACCCAATTCGGTCGGAATGGCTCCGTCGAAA
TGATCTGAACATGTCACATGCTCTTGAGCGATACTTCGATAGGCATAGAG
CATGCACCTCCTTCGCCAGCCAATCGAAATCAATCGAATCAATGGACGAA
ATACATGAAGCTGCCGATAAACGCCTCAATCCTGTTTGAGGGGACACCTG
ACTCGACTCAAGACAAAACCCCAGTCATTCCTATTTGTGTCCCATGTCTT
ATGTCCCATGTCCTCTGTCCTATACATTCTGGTGTCCTACATCCTGTGCA
CGGGTTGCCGAGGAAATGCGCATCTCGCTCCTTGACAGCTTCTTGCACCT
AGCCACCCGCGTTATGCGTTGTCATCAAGTATTTGCTGCACATGCAGAAT
ACTCCGGAGTATAAGAAAAGAACCAAACTGACCAAGATAACTGGAAAGAC
GACCTAGAACTAGTAGAGAACGGATGAAGCTTACCTTGTACCTTCGTTTT
GCCGATTTTGGCGTCGTCCATCGTCATTTTTTGTGTGTGCCAACGAGATC
GGCGTGTCCACTCTCCAATGCTCAGACCACAAGGGCTAGCAGTACCGAAA
ATATCATGATATCTTGTCGTTTCATCGATCGTTCCCCCTGTGCGGGCAAC
AGCTAGCCACAACCAATGTGATCATAGGGGAGGGGCACCAATCGCGACGC
CACGCATCGCCGTAGACCCTTCAGCGCACTGTCCCTGGGCAGCAAAGGTG
GAGCACGGCGGGTACACCAACGAGGCAGGGGCAGAGGCGGGGAGGGTACA
AGCATTTCGAAAATTCGCCGACTCGATGTTTGTTTGTTTTTTCCATCCCA
TATATTGGTTGCCTCGTTACCCTACCAGTGGCGTGGCTGGAGTACAGTTT
CCTCTGCAGGTGTCGATGGTTACTTTGCAGTAGTAAGCGATTCAATCGAT
TCGTGAATAAACAAAATTCGATTTCATTTCGACGAGGGAAAGGAACGGCT
GAACCCTTCTCTTTCTCTTCTCGCGATAAGGATTAAGTGAGGCATGTACC
GCAGGAGGGCTGGTCGGGGATCTCAGGGAGCGGAACCCTTCTGTGTGACC
CCGGCTGAGTGCTAACCCTACAATCATCAAATGTGTAAAAGAAAGGCATA
GCGTCCAGGATAGGTACATGGGATGAAAATATGTTCTCCGGGTGTGTATT
AATACATATGTATGTAGTAATGTATATACATATATATGTAGTAATATACT
CTGGGCGCTAGCCTTTCTTTCCACGTTTTTTCGATGATGGAGGGTGGCGC
GCCAGCCTGGATGCTTGCCCTTTGCAAAAAGATGGGAAAAACCATTTTTT
CCTTTTTTTCCAGCGGTCATCTCATTTTTGTACCGTCGCTCGCAACCTCG
CACTTATAGCTTTCTCTTTGGCCTTGCCTCTCTAGCTGAAGAGCTCCGAT
CCGGTCTCGCGCGAAACAAAGCCTGCGGTGTGCATGCGTGCCTTCATCCT
CTCGCGCCGGAGGGTTCAGCAATTCAGCAATTGTGGGCTCCCGTCAATAT
TATCTACATTTTGTTTTTGGCAGGCATAGTGCGGTTTTTTGTTGGTAGCA
CGCCTCTTTGCTTTTTTTGTCATGCTCGCTTTTTTTGGGTGATTTTTGTT
TTTTTCCCGTTCTCATCACTTCATCCCACCCCATCACATCACATCACATC
ATGTTACCCTCACTCGGACCATGATGCCGGATAACACTCACGCGGTGCTT
CGTCAACAGCCTCATGATTCGCTGCAAGCAGGTCCAATTTTGCTTTGAGT
AGCCCCCGCCGTCTGGTAAGGGATGCGTGGATTATGGCGAAAAGACCTGA
GAAAAGCAAGGAGCGGGTGAGAACGTTAGCCAACACCCCACGTCACCCCC
CACGCGCGCGCGcCCCTGCTGAACCATGAATTCCTCTCTCGGAAGGATGA
GGAAAGGTTGACGTGCTTCCGTGACGCCCCACACCAGTGCCCGGAATTTT
CTGCGAAAAATACTAATGCGGATGGTGATGGCGACGTCGTTGAAGCAGAT
TCCTGTGGCGAGGGTGGTTGCGCTGCCACTGCTGTCGAGACCGCTGCCAC
CGCTACTTCCCTGTAGGGTAGAATGGCGATTATGCTCGATTTGTACAAAC
AAAAAAGTACACAAAGAAAATATGGAAGGCGGGCAACGGCCGGCACACAC
ACACACGCGGAATGCTTCAAGCAACTGAGCATTGCCTCCTCATTTCATCC
GCTCTCTTACTTGTGAGGAGGAATGGACGAATAAGATGTGTGATGTCTTT
GTTAGTGTTGTTGCTGTTTTTGTTGTTGTCTTCACACATTAATTTAACAC
CGTTCCCATCTGTGGTGGGTACGTGCTAAGATGGGTGTTGGTCCAACTGA
TGCGGACACCTTCCGTGGTCACTTGCTAGGCATATAGCGGTAGAGTACCC
GAAAGAGGTATGTTGCGTCACATGCGATGACAACATCAGGGAGAAAAAAA
CGGAGGAGAGAAAACGGACCTAGAAAGGTATACATACAACGCTTTATAGT
TTTCTTGAGGAGCCACCAGCAAGTGTGGCGGTTCTGTCGTTTGGCTCCTG
CAGCAGCAGTGGAATATGCGAATTGTCCCACAGTGTTGTAGTTTTTTTTT
GCTTGCTTGCTTGCTTGCTTGCTTTTTCGTGTGATGTCCCTCCACTGTCC
CTGGTGGCATCTGGATTTTTTGGGGCCGGCCAGCGTGGCACACATGTTAG
CAGATCACTGCGGAAAATTTGACGCCGTGTGTACGATGGTCCATGTAAAA
GACGAGACAAATCTTGCATGTGTCCAACCCGAACAGACGTAGCTTTTTCA
TCCTACAACATGTGAAGTGTGAAGTACGTGGTGCGGTGGGTCCCTCCTTG
GATATGTGAGAACATACTTAGCAGGCCGACCGCTATCCGACGTTGTCAGG
CAAATCCATCCTTTGCTCGGCCTGCTGAACAGACCAAATGGTACGGCGGT
CGACCCCTCTCCTTCGTGCAGTCTACCGCGAGGCTTGCAGGTTGGCACAC
ACCCTACATGGACGGTCGACTGATTTTCAAGGCTCGATTCCTCCACAATC
AAGAGGTTGGCCCAGAAGCACGCCGAAACGCGGTGGTGTGGTGGTTGTGT
AAAGAAAATACGGAGTATGTCGTCGAGAGCTACCATTCCTTAGACTCGTA
TCGGCCCTTTTTTGCGTTTTCTCC
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1070:19134..26057+

>mRNA_P-lacustris_contig1070.629.1 ID=mRNA_P-lacustris_contig1070.629.1|Name=mRNA_P-lacustris_contig1070.629.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=924bp|location=Sequence derived from alignment at P-lacustris_contig1070:19134..26057+ (Pleurocladia lacustris SAG_25_93)
ATGCAGATGCAGGATCGATATCACGGCTTCCGATACGAGGCGGTGGTTGG
TCGAGGCTGCCAGTCCTACGCTGAGGATCGATATCACGGCTTCCGATACG
AGGCGGTGGTTGGTCGAGGCTGCCAGTCCTACGCTGAGGCTGCCCAAGCA
GCGGCGGACGAGCTGGCCTGCTTCGGATGGGTGCAACGGACGTCGCCCGA
CACCATCGCGGGCGAAGGCCGCTGCTCGAAAGCCACCGGCTGCCCAAGCA
GCGGCGGACGAGCTGGCCTGCTTCGGATGGGTGCAACGGACGTCGCCCGA
CACCATCGCGGGCGAAGGCCGCTGCTCGAAAGCCACCGGTCAACTAATGC
AAGAACGCTTGCGCCAGGGTCCGGGGGAGACGTGCAAGATTATCCATTTC
GAGGCGAAAGACTACGAGGATACTAAGATCAAGCTGCATTTTTCTCACTT
CAAGATCCTTGTCAACTAATGCAAGAACGCTTGCGCCAGGGTCCGGGGGA
GACGTGCAAGATTATCCATTTCGAGGCGAAAGACTACGAGGATACTAAGA
TCAAGCTGCATTTTTCTCACTTCAAGATCCTTGATGAGGAAAGGTTGACG
TGCTTCCGTGACGCCCCACACCAGTGCCCGGAATTTTCTGCGAAAAATAC
TAATGCGGATGGTGATGGCGACGTCGTTGAAGCAGATTCCTGTGGCGAGG
GTGGTTGCGCTGCCACTGCTGTCGAGACCGCTGCCACCGCTACTTCCCTG
TAGGATGAGGAAAGGTTGACGTGCTTCCGTGACGCCCCACACCAGTGCCC
GGAATTTTCTGCGAAAAATACTAATGCGGATGGTGATGGCGACGTCGTTG
AAGCAGATTCCTGTGGCGAGGGTGGTTGCGCTGCCACTGCTGTCGAGACC
GCTGCCACCGCTACTTCCCTGTAG
back to top