mRNA_P-lacustris_contig107.616.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig107.616.1
Unique NamemRNA_P-lacustris_contig107.616.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig107.616.1 vs. uniprot
Match: D8LDI0_ECTSI (Ci-SWI/SNF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI0_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 1.280e-61
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 1 
Query:  523 QVFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRG 864
            +VFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKV+RHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRG
Sbjct:  906 KVFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKVSRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRG 1019
[Close]
BLAST of mRNA_P-lacustris_contig107.616.1 vs. uniprot
Match: A0A6H5KHP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP7_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 3.790e-61
Identity = 111/114 (97.37%), Postives = 114/114 (100.00%), Query Frame = 1 
Query:  523 QVFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRG 864
            +VFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKV+RH+NPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRG
Sbjct:  940 KVFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKVSRHSNPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRG 1053
[Close]
BLAST of mRNA_P-lacustris_contig107.616.1 vs. uniprot
Match: A0A7S1XXH0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXH0_9STRA)

HSP 1 Score: 169 bits (428), Expect = 4.070e-43
Identity = 71/114 (62.28%), Postives = 97/114 (85.09%), Query Frame = 1 
Query:  520 HQVFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRR 861
            ++ FW+R  EL +HPK++E+IEKGE+RI R K IR+A+++KV RH +PW  +T++Y GGKGK++T EED FL+NMMHR+GYG WE IR+E+R+AWQFRFDW+FKSR+A E+QRR
Sbjct:  128 YRTFWERYEELPEHPKLLERIEKGERRIARMKSIRAALEAKVGRHPDPWRLMTLDYNGGKGKMYTLEEDVFLINMMHRHGYGEWERIRLEVRRAWQFRFDWYFKSRSAPEIQRR 241
[Close]
BLAST of mRNA_P-lacustris_contig107.616.1 vs. uniprot
Match: A0A835ZE29_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE29_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.340e-42
Identity = 81/113 (71.68%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:  526 VFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRG 864
            VF KRC EL+DH K+MEKIE+GE+RI RSK+I+ A++ KV RH +PW  L I+Y   KGK +TEEEDAFL+NMMHRYGYGNWEVIR +I+KAWQF FDWFFKSRNAAELQ+RG
Sbjct:  816 VFLKRCHELSDHAKVMEKIERGERRIQRSKEIKVALEKKVQRHQSPWQHLPISYGSTKGKTYTEEEDAFLINMMHRYGYGNWEVIRTQIKKAWQFHFDWFFKSRNAAELQKRG 928
[Close]
BLAST of mRNA_P-lacustris_contig107.616.1 vs. uniprot
Match: A0A7S4E930_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E930_9STRA)

HSP 1 Score: 164 bits (416), Expect = 5.140e-42
Identity = 90/184 (48.91%), Postives = 114/184 (61.96%), Query Frame = 1 
Query:  520 HQVFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGHAHPPRGEGKRRARDYRQRRQEAEELLVVGPDRFIKEKEAVRSGQREETTPAMTMRLTLGSESPLMLSA 1071
            H+VFW+R +ELAD  ++++KIEKGEKR+ RSK+IR A+  K+ R   P   L +NY   +GKV+TEEEDAFLLNMMH YGYGNWE IR+EIR AWQF FDWFFKSRNA+EL RR        E +    D R R + +    V   ++  K +   RS    E   A  M+     ESP  + A
Sbjct:   71 HKVFWERHKELADWERVIDKIEKGEKRLQRSKEIREALAEKIARSPKPHECLPLNYGASRGKVWTEEEDAFLLNMMHTYGYGNWERIRVEIRNAWQFNFDWFFKSRNASELGRRADLLIKLVEKENSDLDGRSRPKSSPRASVTASEKPKKSRSRKRSAPTTEDADAKRMKAV---ESPASMEA 251
[Close]
BLAST of mRNA_P-lacustris_contig107.616.1 vs. uniprot
Match: A0A6U0WH08_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0WH08_9STRA)

HSP 1 Score: 167 bits (423), Expect = 2.170e-38
Identity = 73/114 (64.04%), Postives = 92/114 (80.70%), Query Frame = 1 
Query:  520 HQVFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRR 861
            +  FW R  EL +HPKI+E+IEKGE+RI R K+I+ A+D KV RH +PW  ++INY G KGK++T EED FL+NMMHR+GYG WE IR+EIR+AWQFRFDW+FKSRN  E+QRR
Sbjct:  943 YTTFWTRYEELPEHPKILERIEKGERRIARLKEIKHALDVKVARHPDPWRLMSINYNGNKGKMYTLEEDVFLINMMHRHGYGEWERIRLEIRRAWQFRFDWYFKSRNVNEIQRR 1056
[Close]
BLAST of mRNA_P-lacustris_contig107.616.1 vs. uniprot
Match: F0YAG6_AURAN (Uncharacterized protein RUV1 n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAG6_AURAN)

HSP 1 Score: 166 bits (421), Expect = 3.150e-38
Identity = 74/114 (64.91%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:  520 HQVFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRR 861
            H  FWK+ +++AD  ++++K+EKGEKR+ RS++IRSA+  KV RH  PW  L INY   +GKV+TEEEDAFL+NMMH YGYGNWE IR+EIR AWQF FDWFFKSRNA EL RR
Sbjct:  825 HATFWKKHKDIADWERLVDKVEKGEKRLQRSQEIRSALADKVARHPKPWECLPINYGASRGKVWTEEEDAFLVNMMHTYGYGNWERIRVEIRNAWQFNFDWFFKSRNAQELNRR 938
[Close]
BLAST of mRNA_P-lacustris_contig107.616.1 vs. uniprot
Match: A0A8J2SZN3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZN3_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.500e-37
Identity = 90/184 (48.91%), Postives = 114/184 (61.96%), Query Frame = 1 
Query:  520 HQVFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGHAHPPRGEGKRRARDYRQRRQEAEELLVVGPDRFIKEKEAVRSGQREETTPAMTMRLTLGSESPLMLSA 1071
            H+VFW+R +ELAD  ++++KIEKGEKR+ RSK+IR A+  K+ R   P   L +NY   +GKV+TEEEDAFLLNMMH YGYGNWE IR+EIR AWQF FDWFFKSRNA+EL RR        E +    D R R + +    V   ++  K +   RS    E   A  M+     ESP  + A
Sbjct:  920 HKVFWERHKELADWERVIDKIEKGEKRLQRSKEIREALAEKIARSPKPHECLPLNYGASRGKVWTEEEDAFLLNMMHTYGYGNWERIRVEIRNAWQFNFDWFFKSRNASELGRRADLLIKLVEKENSDLDGRSRPKSSPRASVTASEKPKKSRSRKRSAPTTEDADAKRMKAV---ESPASMEA 1100
[Close]
BLAST of mRNA_P-lacustris_contig107.616.1 vs. uniprot
Match: A0A7S2BNI9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNI9_9STRA)

HSP 1 Score: 151 bits (382), Expect = 4.410e-34
Identity = 70/118 (59.32%), Postives = 97/118 (82.20%), Query Frame = 1 
Query:  526 VFWKRCR-ELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYY----GGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRG 864
            VFWK+   +L+D  KI+EKIEKGEK+I R+++IR A+++KV R+A P+  LT+++     G +GK+++EEEDA+L+ MMHR+GYG WE IR EIR+AWQF+FDWFFKSR+AA+LQRRG
Sbjct:  497 VFWKKASSQLSDWSKIIEKIEKGEKKIARNREIREALETKVNRYAQPFQQLTVSFAASSGGARGKIWSEEEDAYLVCMMHRHGYGQWERIRQEIRRAWQFKFDWFFKSRSAADLQRRG 614
[Close]
BLAST of mRNA_P-lacustris_contig107.616.1 vs. uniprot
Match: A0A2R5GCY8_9STRA (ISWI chromatin-remodeling complex ATPase CHR11 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCY8_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.490e-33
Identity = 66/114 (57.89%), Postives = 85/114 (74.56%), Query Frame = 1 
Query:  520 HQVFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRR 861
            H  FW+R +E++DH +I+++I+KGE+++ R   I  A+D KV R  NPW  LTINY   KGK F+EEED FL+ M+ R GYG W+ ++ EIRKAW FRFDWFFKSR AAELQRR
Sbjct:  993 HDTFWRRYKEISDHERIIDRIKKGEQKLARRAAITEALDKKVARTKNPWQALTINYGSNKGKTFSEEEDRFLVCMLQRLGYGAWDQLKQEIRKAWNFRFDWFFKSRTAAELQRR 1106
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig107.616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDI0_ECTSI1.280e-6198.25Ci-SWI/SNF n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KHP7_9PHAE3.790e-6197.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1XXH0_9STRA4.070e-4362.28Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835ZE29_9STRA1.340e-4271.68P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4E930_9STRA5.140e-4248.91Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6U0WH08_9STRA2.170e-3864.04Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0YAG6_AURAN3.150e-3864.91Uncharacterized protein RUV1 n=2 Tax=Aureococcus a... [more]
A0A8J2SZN3_9STRA1.500e-3748.91Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2BNI9_9STRA4.410e-3459.32Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2R5GCY8_9STRA3.490e-3357.89ISWI chromatin-remodeling complex ATPase CHR11 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig107contigP-lacustris_contig107:133980..138798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.4
Seed ortholog evalue7.9e-61
Seed eggNOG ortholog2880.D8LDI0
Preferred nameSMARCA5
KEGG koko:K11654,ko:K11727
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000166,GO:0000182,GO:0000183,GO:0000228,GO:0000733,GO:0000785,GO:0000790,GO:0000793,GO:0000819,GO:0000981,GO:0001067,GO:0001178,GO:0001410,GO:0001650,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003690,GO:0003697,GO:0003700,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005677,GO:0005694,GO:0005700,GO:0005730,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006363,GO:0006366,GO:0006369,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007338,GO:0007399,GO:0007417,GO:0007420,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008623,GO:0009058,GO:0009059,GO:0009373,GO:0009553,GO:0009561,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0014070,GO:0015616,GO:0016043,GO:0016070,GO:0016458,GO:0016462,GO:0016584,GO:0016587,GO:0016589,GO:0016590,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017053,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019237,GO:0019438,GO:0019953,GO:0019954,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030182,GO:0030435,GO:0030436,GO:0030447,GO:0030518,GO:0030522,GO:0030554,GO:0030575,GO:0030874,GO:0031010,GO:0031055,GO:0031213,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033993,GO:0034080,GO:0034097,GO:0034401,GO:0034508,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035039,GO:0035041,GO:0035063,GO:0035075,GO:0035076,GO:0035092,GO:0035639,GO:0035690,GO:0036094,GO:0036310,GO:0036314,GO:0036315,GO:0036436,GO:0036437,GO:0040007,GO:0040026,GO:0040028,GO:0040029,GO:0040034,GO:0042127,GO:0042221,GO:0042493,GO:0042623,GO:0042752,GO:0042766,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043401,GO:0043486,GO:0043565,GO:0043933,GO:0043934,GO:0043936,GO:0043954,GO:0044085,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045814,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0045996,GO:0046019,GO:0046020,GO:0046483,GO:0046688,GO:0048229,GO:0048232,GO:0048468,GO:0048506,GO:0048509,GO:0048510,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051704,GO:0051716,GO:0060194,GO:0060195,GO:0060255,GO:0060260,GO:0060303,GO:0060322,GO:0061062,GO:0061063,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070603,GO:0070615,GO:0070827,GO:0070828,GO:0070829,GO:0070868,GO:0070870,GO:0070887,GO:0070925,GO:0071103,GO:0071241,GO:0071248,GO:0071280,GO:0071310,GO:0071345,GO:0071383,GO:0071390,GO:0071396,GO:0071407,GO:0071444,GO:0071495,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090537,GO:0090568,GO:0097159,GO:0097305,GO:0097306,GO:0097367,GO:0097549,GO:0097617,GO:0097659,GO:0098813,GO:0140097,GO:0140110,GO:1900034,GO:1900036,GO:1900049,GO:1900050,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904949,GO:1905268,GO:1990823,GO:1990830,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000142,GO:2000177,GO:2001141,GO:2001251
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Exons4
Model size3351
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig107.616.1prot_P-lacustris_contig107.616.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig107 134427..136527 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815343.638451-UTR-P-lacustris_contig107:133979..1344261622815343.638451-UTR-P-lacustris_contig107:133979..134426Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig107 133980..134426 +
1693493488.9667459-UTR-P-lacustris_contig107:133979..1344261693493488.9667459-UTR-P-lacustris_contig107:133979..134426Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig107 133980..134426 +
1622815343.702146-UTR-P-lacustris_contig107:136527..1387981622815343.702146-UTR-P-lacustris_contig107:136527..138798Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig107 136528..138798 +
1693493489.0173948-UTR-P-lacustris_contig107:136527..1387981693493489.0173948-UTR-P-lacustris_contig107:136527..138798Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig107 136528..138798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815343.651707-CDS-P-lacustris_contig107:134426..1346781622815343.651707-CDS-P-lacustris_contig107:134426..134678Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig107 134427..134678 +
1693493488.976884-CDS-P-lacustris_contig107:134426..1346781693493488.976884-CDS-P-lacustris_contig107:134426..134678Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig107 134427..134678 +
1622815343.6697204-CDS-P-lacustris_contig107:134876..1349751622815343.6697204-CDS-P-lacustris_contig107:134876..134975Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig107 134877..134975 +
1693493488.9845505-CDS-P-lacustris_contig107:134876..1349751693493488.9845505-CDS-P-lacustris_contig107:134876..134975Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig107 134877..134975 +
1622815343.6808536-CDS-P-lacustris_contig107:135502..1356111622815343.6808536-CDS-P-lacustris_contig107:135502..135611Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig107 135503..135611 +
1693493488.994386-CDS-P-lacustris_contig107:135502..1356111693493488.994386-CDS-P-lacustris_contig107:135502..135611Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig107 135503..135611 +
1622815343.6925213-CDS-P-lacustris_contig107:136354..1365271622815343.6925213-CDS-P-lacustris_contig107:136354..136527Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig107 136355..136527 +
1693493489.0086484-CDS-P-lacustris_contig107:136354..1365271693493489.0086484-CDS-P-lacustris_contig107:136354..136527Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig107 136355..136527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig107.616.1

>prot_P-lacustris_contig107.616.1 ID=prot_P-lacustris_contig107.616.1|Name=mRNA_P-lacustris_contig107.616.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=211bp
MVTKKSFHAACNPGVWGVMSSHQRHQVFWKRCRELADHPKIMEKIEKGEK
RIFRSKQIRSAIDSKVTRHANPWSDLTINYYGGKGKVFTEEEDAFLLNMM
HRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGHAHPPRGEGKR
RARDYRQRRQEAEELLVVGPDRFIKEKEAVRSGQREETTPAMTMRLTLGS
ESPLMLSADG*
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mRNA from alignment at P-lacustris_contig107:133980..138798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig107.616.1 ID=mRNA_P-lacustris_contig107.616.1|Name=mRNA_P-lacustris_contig107.616.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4819bp|location=Sequence derived from alignment at P-lacustris_contig107:133980..138798+ (Pleurocladia lacustris SAG_25_93)
AAAACACACTGGTGAGTGTAGTTATTCCTGCACAGCTCCGGCTGTAGTTG
CGATCCAAAATTCGGGAGAGTAATTCAGGAATCTGTGAGGAATAGCCTAC
ACGTTGGCGTCATCGCCAGCCCGCTTGGAGTGGGGAAGGCATGGCGCTTT
TGCGCTGATATTTCGTTTTGCGGGTGGTATCTTCAGTATCTTCAGCTGTG
TGGCAGGGAAAACCAGACAAGTGGCAGCTGCCCTGTGGAACTTGGGCTGT
AGTTGCGATCCAAAATTCGGGAGGATAATTATGACTACTTCGATAGTGTA
TCTATGCTGTCTCCAAGCGCTGGTCGATTTAGTGCACCGGAAGGTGTGGC
GCTTTTTGCATGAAGATTGCCTCTCGTGCGGCTGCTCACTTGAATTTTGG
GCGAGGGGGCCAAAAAAGCAGACCCCCTCGAGGGGTCTGTGATTCACATG
GTCACAAAAAAATCGTTTCATGCCGCCTGCAACCCGGGTGTCTGGGGCGT
AATGTCGTCACATCAACGTCATCAGGTCTTCTGGAAGCGGTGCCGCGAAC
TGGCAGACCACCCCAAGATCATGGAGAAGATTGAAAAGGGCGAGAAGCGC
ATCTTCCGGTCCAAGCAGATCCGATCTGCCATCGACAGCAAGGTTACAAG
ACACGCGAACCCGTGGAGCGACCTCACCATCAACTACTACGGCGGAAAGG
TGACCTGTCCACCGATTGAAGACGTCATTCAAGCGTTGTTGTTTTTCTTG
TTGCTGTTGTGGTTTTGTTTTGGGGTCAGCGTTGCTAGTGCTGCTGCTAC
GGTTGCTAACCGATGCCGATGCTTTTGTATGTCCCTGCGCACTTTTGCCC
GCCTTCTGCGGGACCCCTTACCCCCCTTCAATTTTCTTTTGTTTCAGGGC
AAAGTGTTCACCGAAGAGGAGGATGCGTTCCTCCTGAACATGATGCATCG
GTACGGCTACGGCAACTGGGAGGTTATCCGCATGGAGATCCGTAAGGTGA
GGAAGAAAGGCCTGATTCTCTTGCTTTGTTTCTGTTTCGATTTTGAGCCG
TTGACACGATGTCTGGCGTCGACCCGGCCGGGATCTCAAGAGCTACGATA
GTTTCAAACACGTGTAAATCTCGCGCAGAGTTTACCTCCGTTTGTTCTTT
TTGTTTTTTGGTGGTACTGGTTATCCCAGAGTGAGGCTTGGTTTAAAACG
TATACAAGGGCCTCTTTTCTGTATTTCCTCGTGACCAGGACTTATATTTC
TCTCCTGACAAAGCAAAGCATCAAAAGACTGAAATCTCATCTCCTATGTT
ACTATTTACTATTTGTTTGTTGCGCTTGGTGGTGTTGTTGCTGCCTTTCC
TTTCCATGACTCGTTTTGCGTCCAATTTCTCCGTCTTTCTAGCTGGGATT
TTTTTGTAAGGTCCTCGATCATCTCTCTCAACCAATTCTTATCCCAACGC
CCTCGCTCCCCCGGGCTGCATTTTCGTGATGCTATCTATCGCGCGCTTGT
GTATTGTATACAATTATATACAGGCGTGGCAGTTCCGCTTCGACTGGTTC
TTCAAGAGCAGAAACGCGGCGGAACTACAGAGGAGGGGACACGCTCATCC
GCCTCGTGGAGAAGGAAAACGAAGAGCTAGAGGTGAATACATGCCATGCC
CTCACGACGTTGTGTTGCACGTTTTTTTACTGTTCTGTGTAGAACGGTTA
CGGGGTGCAACTGTTGTATTGGGTGTTTTGGTGTGTGTGTTTTTTACAAC
AGTTTTTGCACATGGTACAATGTGTACGGCTGTAAACAGCATCCAGCGCT
TGATTCCGTTGTGGCCGTACCAAAGGGCGGAAGAGCCGAGAGCCGCTACA
CCGTTTCGTTGTTGTTGTTCTTGTTTTGTTCTTGTTCTTGGTCTTGGTCT
TATCATACTCAGTATCCAAAACCGGTCCATCCTCTGCTCAGTACCTTCTA
TCGTCCGTACTGGTCTACCTGATTCGAACGCCTTCCGTTGTTACAGGCTG
ACCAGCCAAAAAGGGTATGTAAAATGAATGGTAAAAAACAAAATCGTTAC
GGAACGATGATTTTATCCCCCCTTGTCGTAACCCCCTCCTCGCAAGAGCA
TGTCGTGACTCTTTAGTCATGGTTTTTTCTACGTCTGCATATCATACTTG
TGTGTGCTGCAGCTGGTAACATTGGATCGTTGGGTTAACCGCTTCACTAA
TGGCATGCGTCCCCATTGTTTCCAAAGCATGTCTCCATCCCTCGCGTCAA
CAATGCCTTCATCAGTCGAGCAATTCATTGCATGCCTTGTTTTACGGACT
CGGATCCCCTCCTATCATGCCCTGCCTCGTCTCTCAAATTTGTGTTGTAT
GTGTGCTGGTCGATGACGATATCAGACTACCGGCAACGGCGGCAAGAAGC
GGAGGAGCTTCTCGTCGTCGGACCAGACCGCTTCATCAAAGAAAAAGAAG
CAGTCCGCTCCGGCCAGCGTGAAGAAACAACGCCGGCGATGACGATGAGG
CTAACGCTTGGCTCTGAAAGCCCCTTGATGTTGAGCGCCGATGGTTGACT
AGCCACGTCGATCAGGGAGGGTCACATCGTGAGGGGAACGGGGAGCCGCT
GGATGGCGGTTGCGATGGACCTGACTTTCTGTGATTTCGATCAAGAGCTA
GGACGGATGATATTTGGTTGTTGGTTGTTGGTTATTCCCAGGTTTGAGTG
TTTTTTCCCAATCGGGCTCTGCCGTTTTGTTTGATTCGGGCGAGGGCGCT
GTACCTCGAGCGATTCCGATCCGATCTCTTGAGTGATCACGTTCGGGCTG
CGTTTCTTTTTGATTCTACTTGACGGTTCTCTGACATCGGAATGATTGGC
GCTTGATGGTAGTGATGGTAGGAAGAGGTCGTTGCCGGTGGAGGTCGACG
GTTTCGACCGCTTCCATCGGATCGACGCCTTGCCGATGCCTTTCCTTTCG
AGTGGAACGCCTCCTTTCATTTTCGCTTGGATGTTTTGTCGTTTTAGTTC
TCGGTGGGATGTTATGTGTGCTACAGCGCCAGCAGCTCCGGCGGTGTCGG
TGGTGGAGGTGGCGGCGGGGGCGGGGGCAGGGCCAGCGCTACTAGCGGAG
ATCTGTCACTGAGCTTTCGGCAGTAGAATCATGTCATGGGTTAATCTCGT
CTTTATTTTGTCACCCCGCTTAGCTTCACTTTGGGAGTGCCGCACGGGGA
TTCAAGAGCAAAGGAGCTTCGGGGCGACCTGTCTGGCTTGCCCATGGCCT
AGTCATACGTGTAGAAGACAAGAGGTGGATGTGGATGTTGGCGTCAGATC
GCCGAAACGATGCGTCGCCGCAGAACAAGCCAGCTCAATTTCGACATTGC
TGATGTTGGGTACAGTAGTAGTGATAGTGCTGAGCGAGGCACAACATTTT
GGCGGATTGACTTGCACTCGGCATGGGTGGCGATTGTGGCTGCTGCTTTG
AACCAGTGAGCCTTGTACAGTGCCTGGAGAGCTAGCTCGTTGCAGCATTG
GCTTTACTCGGAGCGGAGTCTCCGTTTCTCGCTTACGATGTTTAACTTGG
CGTGATAGCGGGCGCCTTCAGCTTGTTGGTGTATCGTCGCTTTGTGTTGC
CGATAGCGTCCGCCGTTCAACGGTCACCGGTGACCGGGGACACCGTTTTC
TAGGATAGGGAAGAAAGAGGTGGGTAAGAATGTAGCAAAGAGTGTCATCG
GTCCACAATGAAGAAGGCTGCATTTGAAGCGAGATGCGTGGAGTTTCCGA
CGTCACTGCGTGTGTCTGAGTCGTCGATGCCGTTCTCGTCATTGTCATCG
CCGGCCCTCCTCGGCAACGAATTCATTAATTGGCGTTTCAGAGCGGCGCG
ACGGCGTGTTTGTGTAGATCTACGCCCGGGGGCTGGTTTGCCACAACTCA
CGGATGGCTACCCCGTGCAGTGTACAATCGAAAAGATCCCGGTCCCCCCT
ACATTATTTATTGCTTTCTTTGGGTTGACAGGTAGAAAATGAGAGGGAGC
GCACATAGGCCGCAGAGGAACACGTGTTTTGTTTGTGTAATTTTTGCCAG
GGGGTTGCGAATGGTAGCATCGAGGATGTTAGCCGGACATGATAGGTTGG
ATAGGTTCAGAGTCGCGTACTTTGTGGTTGTTCGTGTTGAGAGTGCCCGA
TGTGACTAGTTTTGCTTTTAATTGCAATAATAGTATTCTAGAAGTCGTTA
CTGACTGTTGTCATCCGCGTTGTTTTGAGCGATCGCGGTGGAGGGGAGTC
TTGAAGTGGTCGGAAGTGTCAGAAAGAGCTAGATGAAAAACGACTACAGA
TTGGTCGACATCCAGGTGCTTGCATGCGTGTGTGCTGATGGGGGATTCCG
GAACAACTTGCGCGCGCCAACAAGTCAAGGAGACCATGTACCAAAGCATG
CATGAACGGGAATTTTGAATTTTGTGCGCGAAACCCCGGATCGGAGATTT
TCAACCAGAACCGGAGATCATCAGCCCGAGAGGCAAAGAGCGTAGAAACT
CCAGGCGAGGGGTAGGACTGCCTCAAAAACGGTTTCAAAATGGGGCGAAG
ATGAAAAAATCGGGTGGGTGGTGCGTGTATTTGGATAGCTCGCTTCGTTG
GTATTTCACGCGATTGAGTATGGTATAGCATGGCACAAGGCAGAGCAGTC
GTGTACTCACTCGCAGAAATGATGGGAGACGTGCTGTGCGGCATTCTTTG
GCGTCATTGAGCAGCATTCATTTCCGTGAAAAAAAAAGTGAAGAAGACAG
AGACTACTGTACAAGTAGTTTGGTGCGGCTTTTTCCTGGTGGCGATAGAC
GCGATACAGCTGGCACGAT
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Coding sequence (CDS) from alignment at P-lacustris_contig107:133980..138798+

>mRNA_P-lacustris_contig107.616.1 ID=mRNA_P-lacustris_contig107.616.1|Name=mRNA_P-lacustris_contig107.616.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1266bp|location=Sequence derived from alignment at P-lacustris_contig107:133980..138798+ (Pleurocladia lacustris SAG_25_93)
ATGGTCACAAAAAAATCGTTTCATGCCGCCTGCAACCCGGGTGTCTGGGG
CGTAATGTCGTCACATCAACGTCATCAGGTCTTCTGGAAGCGGTGCCGCG
AACTGGCAGACCACCCCAAGATCATGGAGAAGATTGAAAAGGGCGAGAAG
CGCATCTTCCGGTCCAAGCAGATCCGATCTGCCATCGACAGCAAGGTTAC
AAGACACGCGAACCCGTGGAGCGACCTCACCATCAACTACTACGGCGGAA
AGATGGTCACAAAAAAATCGTTTCATGCCGCCTGCAACCCGGGTGTCTGG
GGCGTAATGTCGTCACATCAACGTCATCAGGTCTTCTGGAAGCGGTGCCG
CGAACTGGCAGACCACCCCAAGATCATGGAGAAGATTGAAAAGGGCGAGA
AGCGCATCTTCCGGTCCAAGCAGATCCGATCTGCCATCGACAGCAAGGTT
ACAAGACACGCGAACCCGTGGAGCGACCTCACCATCAACTACTACGGCGG
AAAGGGCAAAGTGTTCACCGAAGAGGAGGATGCGTTCCTCCTGAACATGA
TGCATCGGTACGGCTACGGCAACTGGGAGGTTATCCGCATGGAGATCCGT
AAGGGCAAAGTGTTCACCGAAGAGGAGGATGCGTTCCTCCTGAACATGAT
GCATCGGTACGGCTACGGCAACTGGGAGGTTATCCGCATGGAGATCCGTA
AGGCGTGGCAGTTCCGCTTCGACTGGTTCTTCAAGAGCAGAAACGCGGCG
GAACTACAGAGGAGGGGACACGCTCATCCGCCTCGTGGAGAAGGAAAACG
AAGAGCTAGAGGCGTGGCAGTTCCGCTTCGACTGGTTCTTCAAGAGCAGA
AACGCGGCGGAACTACAGAGGAGGGGACACGCTCATCCGCCTCGTGGAGA
AGGAAAACGAAGAGCTAGAGACTACCGGCAACGGCGGCAAGAAGCGGAGG
AGCTTCTCGTCGTCGGACCAGACCGCTTCATCAAAGAAAAAGAAGCAGTC
CGCTCCGGCCAGCGTGAAGAAACAACGCCGGCGATGACGATGAGGCTAAC
GCTTGGCTCTGAAAGCCCCTTGATGTTGAGCGCCGATGGTTGAACTACCG
GCAACGGCGGCAAGAAGCGGAGGAGCTTCTCGTCGTCGGACCAGACCGCT
TCATCAAAGAAAAAGAAGCAGTCCGCTCCGGCCAGCGTGAAGAAACAACG
CCGGCGATGACGATGAGGCTAACGCTTGGCTCTGAAAGCCCCTTGATGTT
GAGCGCCGATGGTTGA
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