mRNA_P-lacustris_contig1069.608.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1069.608.1
Unique NamemRNA_P-lacustris_contig1069.608.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1069.608.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.730e-5
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   64 RSEKFCREHAQEGMVDLVHKKCAHRDCTKQPSFGVAGSK 180
            ++ +FC +H Q+ MV++V K+C H  CTKQPS+G AGSK
Sbjct:   20 KNAEFCSQHKQQDMVNVVSKRCGHPGCTKQPSYGRAGSK 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1069.608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5N3_9PHAE1.730e-553.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1069contigP-lacustris_contig1069:69118..70579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size564
Cds size564
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815341.7390423-CDS-P-lacustris_contig1069:69117..696081622815341.7390423-CDS-P-lacustris_contig1069:69117..69608Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1069 69118..69608 -
1693493487.7183654-CDS-P-lacustris_contig1069:69117..696081693493487.7183654-CDS-P-lacustris_contig1069:69117..69608Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1069 69118..69608 -
1622815341.7515216-CDS-P-lacustris_contig1069:70506..705791622815341.7515216-CDS-P-lacustris_contig1069:70506..70579Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1069 70507..70579 -
1693493487.728841-CDS-P-lacustris_contig1069:70506..705791693493487.728841-CDS-P-lacustris_contig1069:70506..70579Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1069 70507..70579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1069.608.1prot_P-lacustris_contig1069.608.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1069 69118..70579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1069.608.1

>prot_P-lacustris_contig1069.608.1 ID=prot_P-lacustris_contig1069.608.1|Name=mRNA_P-lacustris_contig1069.608.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=188bp
SARSAHTGTAPSTHRLASREPRSEKFCREHAQEGMVDLVHKKCAHRDCTK
QPSFGVAGSKKREFCREHAQEGMVDLKRGGGGTMHGPSNLAARPISSGVR
ATATRGGGNGSSGSIVHRPAGSRSVRGHTLFSTQTTRESGGCAIGRDRSG
GGSDASDVAGHSRASPAALELEAAVEERVVVAESHSSP
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mRNA from alignment at P-lacustris_contig1069:69118..70579-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1069.608.1 ID=mRNA_P-lacustris_contig1069.608.1|Name=mRNA_P-lacustris_contig1069.608.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1462bp|location=Sequence derived from alignment at P-lacustris_contig1069:69118..70579- (Pleurocladia lacustris SAG_25_93)
TCAGCAAGAAGTGCGCACACCGGGACTGCACCAAGCACCCATCGTTTGGC
GTCGCGGGAACCAAGAAGCGAGAGTTCTGTAGGGAGCATGCCCAGGAAGG
AATGGTCGATATCGTCAGCAACAAGTGCGTACACCCGGACTGCACCAAGA
AACCGTCGTTTGGCGTCGCGGGAACCAAGAAGCCAGAGTTCTGCAGGGAG
CATGCCCAGGAAGGAATGGTCGATAACAAAGAAGTCGTCACCAAGCGGCC
GTCGTTTGGCGTCGCGGGAAGCAAGTGCGAGAGTTCTGCAGGGAGCATGC
CCAGGAAGGAATGGTCGATATCGTCAGCAACAAGTGCGCTCACCAGGACT
GCACCAAGCGGCCGTCGTTTGGCGTCGCGGGAACCAAGAAGCCAGAGTTT
TGCAGGGAGCATGCCCAGGAAGAAATGGTCAACGTCGTCAACAAGAAATG
CGCACACCGGGACTGCACCAAGCACGCGACGTTTGGCGTCGACCTTCGTC
AGAGCATGCCCAGGAAGGAATGGTCGACCTCGTCAACAAGAAATGCGCAC
ACCGGGACTGCACCAAGCAACCGTCGTTTGGCGTCGCGGGAACCAAGAAG
CCAGAGTTCTGCCGGGAGCATGCCCAGGAAGGAATGGTCGATCTCGTCCA
CAACAAGTGCGCACACCGGGACTGCACCAAGCACCCATCGTTTGGCGTCG
CGGGAAGCAAGAAGCCAGAGTTCTGCGGGGAGCATGCCCAGGAAGGAATG
GTCGATCTCGTCAGCACACCGGGAAAGCACCGCACACCAAGGGACTGCAA
AGCGGCCGTCGTTTGGCGTCGCGGGAACCAAGAAGCCAGAGTTCTGCCGG
GAGCATGCCCAGGAAGGAATGGTCGATATCGTCAGCAAGAAGTGCGCACA
CCGGGACTGTTTGGCGTCACCTGGCAACCCATCGTTTGGCGTCGCGGGAA
CCATTTTGGCGTCGAAGCGAGAGTTCTGCCGGGAGCATGCCCAGGAAGGA
ATGGTCGATCTCGTCCACAAGAAGTGCGCACACCGGGACTGCACCAAGCA
ACCGTCGTTTGGCGTCGCGGGAAGCAAGAAGCGAGAGTTCTGCCGGGAGC
ATGCCCAGGAAGGAATGGTCGACCTGAAACGCGGTGGAGGGGGTACCATG
CACGGCCCCAGTAATTTAGCAGCCCGACCGATTAGCTCCGGGGTTCGAGC
GACAGCAACCCGAGGCGGCGGGAACGGCAGCAGCGGGAGTATCGTACATC
GTCCGGCAGGAAGCCGTAGCGTAAGGGGCCACACTCTTTTTTCGACCCAG
ACGACGAGAGAAAGCGGTGGTTGTGCGATTGGCCGAGACAGATCGGGGGG
CGGTAGCGACGCCAGCGATGTCGCCGGCCATTCTCGTGCTTCTCCAGCAG
CACTTGAACTCGAGGCGGCGGTCGAAGAGCGGGTTGTTGTCGCGGAAAGC
CACTCGTCTCCT
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Coding sequence (CDS) from alignment at P-lacustris_contig1069:69118..70579-

>mRNA_P-lacustris_contig1069.608.1 ID=mRNA_P-lacustris_contig1069.608.1|Name=mRNA_P-lacustris_contig1069.608.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1128bp|location=Sequence derived from alignment at P-lacustris_contig1069:69118..70579- (Pleurocladia lacustris SAG_25_93)
TCAGCAAGAAGTGCGCACACCGGGACTGCACCAAGCACCCATCGTTTGGC
GTCGCGGGAACCAAGAAGCGAGATCAGCAAGAAGTGCGCACACCGGGACT
GCACCAAGCACCCATCGTTTGGCGTCGCGGGAACCAAGAAGCGAGAAGTT
CTGCCGGGAGCATGCCCAGGAAGGAATGGTCGATCTCGTCCACAAGAAGT
GCGCACACCGGGACTGCACCAAGCAACCGTCGTTTGGCGTCGCGGGAAGC
AAGAAGCGAGAGTTCTGCCGGGAGCATGCCCAGGAAGGAATGGTCGACCT
GAAACGCGGTGGAGGGGGTACCATGCACGGCCCCAGTAATTTAGCAGCCC
GACCGATTAGCTCCGGGGTTCGAGCGACAGCAACCCGAGGCGGCGGGAAC
GGCAGCAGCGGGAGTATCGTACATCGTCCGGCAGGAAGCCGTAGCGTAAG
GGGCCACACTCTTTTTTCGACCCAGACGACGAGAGAAAGCGGTGGTTGTG
CGATTGGCCGAGACAGATCGGGGGGCGGTAGCGACGCCAGCGATGTCGCC
GGCCATTCTCGTGCTTCTCCAGCAGCACTTGAACTCGAGGCGGCGGTCGA
AGAGCGGGTTGTTGTCGCGGAAAGCCACTCGTCTCCTAGTTCTGCCGGGA
GCATGCCCAGGAAGGAATGGTCGATCTCGTCCACAAGAAGTGCGCACACC
GGGACTGCACCAAGCAACCGTCGTTTGGCGTCGCGGGAAGCAAGAAGCGA
GAGTTCTGCCGGGAGCATGCCCAGGAAGGAATGGTCGACCTGAAACGCGG
TGGAGGGGGTACCATGCACGGCCCCAGTAATTTAGCAGCCCGACCGATTA
GCTCCGGGGTTCGAGCGACAGCAACCCGAGGCGGCGGGAACGGCAGCAGC
GGGAGTATCGTACATCGTCCGGCAGGAAGCCGTAGCGTAAGGGGCCACAC
TCTTTTTTCGACCCAGACGACGAGAGAAAGCGGTGGTTGTGCGATTGGCC
GAGACAGATCGGGGGGCGGTAGCGACGCCAGCGATGTCGCCGGCCATTCT
CGTGCTTCTCCAGCAGCACTTGAACTCGAGGCGGCGGTCGAAGAGCGGGT
TGTTGTCGCGGAAAGCCACTCGTCTCCT
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