mRNA_P-lacustris_contig1068.603.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1068.603.1
Unique NamemRNA_P-lacustris_contig1068.603.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1068.603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1068contigP-lacustris_contig1068:15618..16389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size772
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1068.603.1prot_P-lacustris_contig1068.603.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1068 15721..16125 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815341.2274845-UTR-P-lacustris_contig1068:15617..157201622815341.2274845-UTR-P-lacustris_contig1068:15617..15720Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1068 15618..15720 +
1693493487.403019-UTR-P-lacustris_contig1068:15617..157201693493487.403019-UTR-P-lacustris_contig1068:15617..15720Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1068 15618..15720 +
1622815341.2553737-UTR-P-lacustris_contig1068:16125..163891622815341.2553737-UTR-P-lacustris_contig1068:16125..16389Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1068 16126..16389 +
1693493487.4198143-UTR-P-lacustris_contig1068:16125..163891693493487.4198143-UTR-P-lacustris_contig1068:16125..16389Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1068 16126..16389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815341.2412953-CDS-P-lacustris_contig1068:15720..161251622815341.2412953-CDS-P-lacustris_contig1068:15720..16125Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1068 15721..16125 +
1693493487.41172-CDS-P-lacustris_contig1068:15720..161251693493487.41172-CDS-P-lacustris_contig1068:15720..16125Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1068 15721..16125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1068.603.1

>prot_P-lacustris_contig1068.603.1 ID=prot_P-lacustris_contig1068.603.1|Name=mRNA_P-lacustris_contig1068.603.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=135bp
MCPCVSLVLSHQMHKSHECTAVCTSMQEPSHAMNENYYARNQVMRCTRTT
MLCDHARNTTPRQNADRQQARRATAATQAIAAKPCKFLKYASHQEHTHEA
KPSSGRCMRLKSRMKCDVSDMIEQTSKAELISVN*
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mRNA from alignment at P-lacustris_contig1068:15618..16389+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1068.603.1 ID=mRNA_P-lacustris_contig1068.603.1|Name=mRNA_P-lacustris_contig1068.603.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=772bp|location=Sequence derived from alignment at P-lacustris_contig1068:15618..16389+ (Pleurocladia lacustris SAG_25_93)
CACAAGCTGTTTTTTTTGCAAATCCGGTTTTCGCACCAAATGCACAAATC
ACACGAATGTGCTGCTGTATGCTGCACAATATCCAAATGTTCAATGAGAC
TGCATGTGCCCTTGCGTATCGCTGGTGCTTTCGCACCAAATGCACAAATC
ACACGAATGTACTGCTGTATGCACATCCATGCAAGAACCAAGTCATGCGA
TGAACGAGAACTACTATGCTAGAAACCAAGTCATGCGATGTACGAGAACT
ACTATGCTATGCGACCATGCGAGAAACACTACGCCGCGCCAAAACGCGGA
TCGCCAGCAAGCCAGACGTGCCACCGCTGCCACGCAGGCGATCGCGGCGA
AGCCATGCAAATTCTTGAAATATGCTAGCCACCAAGAACACACACATGAG
GCCAAACCTTCCTCTGGCCGGTGCATGCGATTGAAAAGCCGAATGAAGTG
TGATGTGAGCGATATGATTGAGCAAACAAGCAAGGCAGAGTTGATTAGCG
TGAACTGAATGATGTGTGCGCAAGAAAGAGCTCTGAAGGCTCCTGGTTCC
TGTGCTCGAGCATGCTGGAACAACTTGGTCCATGCGAATCCTGCATAATG
CTGTACACTCCGGTACTGCGCCAGCTCGGACACGCGCAGACATGCGTTTT
GGACCATGCCTATTTTTTGTCGGTTTGCTTCTCTGGGAATAACAACTTGG
TCCATTGAGGCTCGTGTCGAGCTGCGGTAACTTAACCGCAGTACCATCAT
GGACACGAGTCAGCAGCCCGGC
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Coding sequence (CDS) from alignment at P-lacustris_contig1068:15618..16389+

>mRNA_P-lacustris_contig1068.603.1 ID=mRNA_P-lacustris_contig1068.603.1|Name=mRNA_P-lacustris_contig1068.603.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=810bp|location=Sequence derived from alignment at P-lacustris_contig1068:15618..16389+ (Pleurocladia lacustris SAG_25_93)
ATGTGCCCTTGCGTATCGCTGGTGCTTTCGCACCAAATGCACAAATCACA
CGAATGTACTGCTGTATGCACATCCATGCAAGAACCAAGTCATGCGATGA
ACGAGAACTACTATGCTAGAAACCAAGTCATGCGATGTACGAGAACTACT
ATGCTATGCGACCATGCGAGAAACACTACGCCGCGCCAAAACGCGGATCG
CCAGCAAGCCAGACGTGCCACCGCTGCCACGCAGGCGATCGCGGCGAAGC
CATGCAAATTCTTGAAATATGCTAGCCACCAAGAACACACACATGAGGCC
AAACCTTCCTCTGGCCGGTGCATGCGATTGAAAAGCCGAATGAAGTGTGA
TGTGAGCGATATGATTGAGCAAACAAGCAAGGCAGAGTTGATTAGCGTGA
ACTGAATGTGCCCTTGCGTATCGCTGGTGCTTTCGCACCAAATGCACAAA
TCACACGAATGTACTGCTGTATGCACATCCATGCAAGAACCAAGTCATGC
GATGAACGAGAACTACTATGCTAGAAACCAAGTCATGCGATGTACGAGAA
CTACTATGCTATGCGACCATGCGAGAAACACTACGCCGCGCCAAAACGCG
GATCGCCAGCAAGCCAGACGTGCCACCGCTGCCACGCAGGCGATCGCGGC
GAAGCCATGCAAATTCTTGAAATATGCTAGCCACCAAGAACACACACATG
AGGCCAAACCTTCCTCTGGCCGGTGCATGCGATTGAAAAGCCGAATGAAG
TGTGATGTGAGCGATATGATTGAGCAAACAAGCAAGGCAGAGTTGATTAG
CGTGAACTGA
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