mRNA_P-lacustris_contig1067.600.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 432 bits (1110), Expect = 2.440e-144 Identity = 216/257 (84.05%), Postives = 227/257 (88.33%), Query Frame = 1
Query: 1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGSGRFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDEES-DCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGDDDMSMSYSF 768
MART FVALAC MLGAA ALEV+TPS DL+VVADRTYTVEWTGA SGRFEIDLY+CGSMCM+DSCGDWVTALCPYGE+GCPDNEGDYDIVMPEPM ES SGYKVRVMDV DE+S DCSDAFYLMAS +AP E GY LTVTSP GD AEAGEEYTVE FDYDNGVGSKVDRFSIDLYMA+GDGDCGTYVTSICDKPSIGCKDSMGDYDVEIP DT +G+Y IRVGRFEDE LY CSG FTI+G DD SMSY F
Sbjct: 1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVE-FDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDESMSYDF 256
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 377 bits (969), Expect = 5.280e-123 Identity = 195/268 (72.76%), Postives = 214/268 (79.85%), Query Frame = 1
Query: 1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGS-GRFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDEE-SDCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGDDD----------MSMSYSF 768
M RT FVALACGMLGAA AL+V TPS+ L V+ADRTYTVEWTG S RFEIDLYYCGSMCM+D CGDWVTALCPYGEDGCPDNEGDYDIVMPEPM SGSGYKVRV D+ DEE +DCSD FYL+AS EAP+ EDG +L VTSP +GD+A EYTVE FDYDNGVGS VDRF+IDLY A+G+GDCGTYV SICDKP+IGCKDSMGDYDVEIP DT +GEY IRV RFED++LY CSG FTI DD S+SY F
Sbjct: 1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVE-FDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDSDXXXXXEDAFSLSYRF 267
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 370 bits (951), Expect = 1.900e-120 Identity = 186/258 (72.09%), Postives = 211/258 (81.78%), Query Frame = 1
Query: 1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGSG-RFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDEES-DCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGDDDMSMSYSF 768
M RT FVALACGMLG A+ALEV+TP+ +VV+ R YTVEW+G GS RFEIDLYYC SMCM+D CG+WVTALCPYGEDGCPDNEGDYDIVMPEPM SGSGYKVRV DVDDE+S DCSD FYLMA +AP+ G +TVTSP+TGD AEAGEEYTVE FDYDNG+GS V RF+IDLY A G GDCGT++ ++CDKP+IGCKDSMGDYDVEIPED +G Y+IRVG FEDE++Y CS F I+G DD SMSY F
Sbjct: 2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVE-FDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSSMSYRF 258
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 349 bits (896), Expect = 5.670e-112 Identity = 174/239 (72.80%), Postives = 199/239 (83.26%), Query Frame = 1
Query: 37 MLGAATALEVITPSEDLVVVADRTYTVEWTGAGSG-RFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDEES-DCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGDDD 747
MLGAA+ALEV+TP+E +VVA R YTVEWTG GS R+EIDLYYCGSMCM+D CGDWVTALCPYGEDGCPDNEGDYDIVMPEPM SGSGYKVRV DVDD++S DCSD FYLMA EAP+ G +TVTSP++GD AEAGEEYTVE FDYDNG+GS V RF+IDLY A G GDCGT++ ++CDKP+IGCKDSMGDYDVEIPED +G Y+IRVG FED+++Y CS F I+G DD
Sbjct: 1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVE-FDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADD 238
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 335 bits (859), Expect = 8.960e-107 Identity = 171/257 (66.54%), Postives = 199/257 (77.43%), Query Frame = 1
Query: 1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGSGRFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDE-ESDCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGDDDMSMSYSF 768
MARTAF A+A GML AA ALEV++P + V+ADR YTVEWTG +GRFEIDLYYC S CMDD CGDWVTALCPYG DGCPD+ GDYDI+MPEPM S SGYKV V + +DE + CSD F L+AS +AP GE GYSLTVTSP+ GD A AGE YTVE +DY+NG GS DRF++DLY+ G GDCGTYVT++CD+PSIGC DS GDYDVEIP DTP+G YSIRVG F+DE +YDCS F + DDM++S F
Sbjct: 1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEA-GEMGYSLTVTSPSDGDTAMAGEVYTVE-WDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSDDMTISMRF 254
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 328 bits (840), Expect = 6.030e-104 Identity = 174/255 (68.24%), Postives = 196/255 (76.86%), Query Frame = 1
Query: 1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGSGRFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDEES-DCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYM-AEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGD-DDMSM 756
MARTAF ALA GMLGAA ALEV++P+ + V+ADRTYTVEWTG RFEIDLYYCGS CM+D CGDWVTALCPYG DGCPD +GDYDIVMPEPM S SGYKV V D +DE S CS F L+AS +AP GE GYSLTVTSP+ GD A AG YTVE +DY+NG+GS DRF+IDLY G GDCGTYV ++CDKPSIGC DS GDYDVEIP DTP+G YS+RVG F D+ ++DCS F IV D DMSM
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAA-GEVGYSLTVTSPSDGDTAMAGGVYTVE-WDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMSM 252
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 326 bits (835), Expect = 3.120e-103 Identity = 171/255 (67.06%), Postives = 196/255 (76.86%), Query Frame = 1
Query: 1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGSGRFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDEES-DCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGDDDMSMSY 762
MARTAF ALA GMLGAA ALEV++P+ +VVAD YTVEWTGA SGR++IDLYYCGS+CM+D CGDWVTALCPYG+DGCPD +GDYD+VMPEPM S SGYKV V D DE CS F L+AS EAP Y ++VTSP+ GD A AG EYTVE FDYDNG+GS V+RF+IDLY + G GDCGTYVT+ICDKPSIGCKDS GDYDV IP T SG YSIRVG FED+ +Y CS F IVG + MS+ +
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGAY-VSVTSPSDGDTAMAGGEYTVE-FDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGESMSVRF 252
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 320 bits (821), Expect = 2.760e-101 Identity = 168/236 (71.19%), Postives = 188/236 (79.66%), Query Frame = 1
Query: 1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGS-GRFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDEE-SDCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDS----MGDYDVEIPEDTPSGEYSIRVGRF 690
MART FVALACGMLGAA AL+V TPS+ L V+ADRTYTVEWTG S RFEIDLYYCGSMCM+D CGDWVTALCPYGEDGCPDNEGDYDIVMPEPM SGSGYKVRV D+ DEE +DCSD FYL+AS EAP+ EDG +L VTSP +GD+A EYTVE FDYDNGVGS+VDRF+IDLY A+GDGDCGTYV SICDKP+IGCKDS G + V+ G +S+ V R+
Sbjct: 2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVE-FDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLVLRY 236
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 274 bits (700), Expect = 3.030e-83 Identity = 152/257 (59.14%), Postives = 172/257 (66.93%), Query Frame = 1
Query: 1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGSGRFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDE-ESDCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGDDDMSMSYSF 768
MARTAF ALA GMLGA ALEV +P+ ++VA + TVEWTG SGRF+IDLYYCGS+CM+D CGDWVTALCPYG+DGCPD +GDYD+VMPEPM S SGYKV V D DE + CS F L+AS A FD+DNG GS V+RFSIDLYM+ G GDCGTYVTSICDK SIGCKDS GDYDV IP DT SG YSIRVG FED ++ CS F I+G + SMS F
Sbjct: 1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVAS--AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGES-SMSVRF 253
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 268 bits (686), Expect = 5.140e-78 Identity = 135/187 (72.19%), Postives = 150/187 (80.21%), Query Frame = 1
Query: 181 MDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDD-EESDCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVG 738
++D CG+WVTALCPYG +GCPDNEGDYDIVMPEPM SGSGYKVRV DVD +++DCSD FYLMAS EAP G D L VTSP+ GD A+AG EYTVE FDYDNGVGS+VDRF IDLY G GDCGT+V ++CDK +IGCKDSMGDYDVEIPE G YSIRVGRFED+ALY CSG F IVG
Sbjct: 12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVE-FDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVG 197 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1067.600.1 >prot_P-lacustris_contig1067.600.1 ID=prot_P-lacustris_contig1067.600.1|Name=mRNA_P-lacustris_contig1067.600.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=257bp MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGSGRFEback to top mRNA from alignment at P-lacustris_contig1067:59040..62997+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1067.600.1 ID=mRNA_P-lacustris_contig1067.600.1|Name=mRNA_P-lacustris_contig1067.600.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3958bp|location=Sequence derived from alignment at P-lacustris_contig1067:59040..62997+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1067:59040..62997+ >mRNA_P-lacustris_contig1067.600.1 ID=mRNA_P-lacustris_contig1067.600.1|Name=mRNA_P-lacustris_contig1067.600.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1542bp|location=Sequence derived from alignment at P-lacustris_contig1067:59040..62997+ (Pleurocladia lacustris SAG_25_93)back to top |