mRNA_P-lacustris_contig1067.600.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1067.600.1
Unique NamemRNA_P-lacustris_contig1067.600.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 432 bits (1110), Expect = 2.440e-144
Identity = 216/257 (84.05%), Postives = 227/257 (88.33%), Query Frame = 1
Query:    1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGSGRFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDEES-DCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGDDDMSMSYSF 768
            MART FVALAC MLGAA ALEV+TPS DL+VVADRTYTVEWTGA SGRFEIDLY+CGSMCM+DSCGDWVTALCPYGE+GCPDNEGDYDIVMPEPM  ES SGYKVRVMDV DE+S DCSDAFYLMAS +AP    E GY LTVTSP  GD AEAGEEYTVE FDYDNGVGSKVDRFSIDLYMA+GDGDCGTYVTSICDKPSIGCKDSMGDYDVEIP DT +G+Y IRVGRFEDE LY CSG FTI+G DD SMSY F
Sbjct:    1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVE-FDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDESMSYDF 256          
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 377 bits (969), Expect = 5.280e-123
Identity = 195/268 (72.76%), Postives = 214/268 (79.85%), Query Frame = 1
Query:    1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGS-GRFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDEE-SDCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGDDD----------MSMSYSF 768
            M RT FVALACGMLGAA AL+V TPS+ L V+ADRTYTVEWTG  S  RFEIDLYYCGSMCM+D CGDWVTALCPYGEDGCPDNEGDYDIVMPEPM   SGSGYKVRV D+ DEE +DCSD FYL+AS EAP+   EDG +L VTSP +GD+A    EYTVE FDYDNGVGS VDRF+IDLY A+G+GDCGTYV SICDKP+IGCKDSMGDYDVEIP DT +GEY IRV RFED++LY CSG FTI   DD           S+SY F
Sbjct:    1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVE-FDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDSDXXXXXEDAFSLSYRF 267          
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 370 bits (951), Expect = 1.900e-120
Identity = 186/258 (72.09%), Postives = 211/258 (81.78%), Query Frame = 1
Query:    1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGSG-RFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDEES-DCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGDDDMSMSYSF 768
            M RT FVALACGMLG A+ALEV+TP+   +VV+ R YTVEW+G GS  RFEIDLYYC SMCM+D CG+WVTALCPYGEDGCPDNEGDYDIVMPEPM   SGSGYKVRV DVDDE+S DCSD FYLMA  +AP+     G  +TVTSP+TGD AEAGEEYTVE FDYDNG+GS V RF+IDLY A G GDCGT++ ++CDKP+IGCKDSMGDYDVEIPED  +G Y+IRVG FEDE++Y CS  F I+G DD SMSY F
Sbjct:    2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVE-FDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSSMSYRF 258          
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 349 bits (896), Expect = 5.670e-112
Identity = 174/239 (72.80%), Postives = 199/239 (83.26%), Query Frame = 1
Query:   37 MLGAATALEVITPSEDLVVVADRTYTVEWTGAGSG-RFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDEES-DCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGDDD 747
            MLGAA+ALEV+TP+E  +VVA R YTVEWTG GS  R+EIDLYYCGSMCM+D CGDWVTALCPYGEDGCPDNEGDYDIVMPEPM   SGSGYKVRV DVDD++S DCSD FYLMA  EAP+     G  +TVTSP++GD AEAGEEYTVE FDYDNG+GS V RF+IDLY A G GDCGT++ ++CDKP+IGCKDSMGDYDVEIPED  +G Y+IRVG FED+++Y CS  F I+G DD
Sbjct:    1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVE-FDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADD 238          
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 335 bits (859), Expect = 8.960e-107
Identity = 171/257 (66.54%), Postives = 199/257 (77.43%), Query Frame = 1
Query:    1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGSGRFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDE-ESDCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGDDDMSMSYSF 768
            MARTAF A+A GML AA ALEV++P   + V+ADR YTVEWTG  +GRFEIDLYYC S CMDD CGDWVTALCPYG DGCPD+ GDYDI+MPEPM   S SGYKV V + +DE +  CSD F L+AS +AP   GE GYSLTVTSP+ GD A AGE YTVE +DY+NG GS  DRF++DLY+  G GDCGTYVT++CD+PSIGC DS GDYDVEIP DTP+G YSIRVG F+DE +YDCS  F +   DDM++S  F
Sbjct:    1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEA-GEMGYSLTVTSPSDGDTAMAGEVYTVE-WDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSDDMTISMRF 254          
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 6.030e-104
Identity = 174/255 (68.24%), Postives = 196/255 (76.86%), Query Frame = 1
Query:    1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGSGRFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDEES-DCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYM-AEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGD-DDMSM 756
            MARTAF ALA GMLGAA ALEV++P+  + V+ADRTYTVEWTG    RFEIDLYYCGS CM+D CGDWVTALCPYG DGCPD +GDYDIVMPEPM   S SGYKV V D +DE S  CS  F L+AS +AP   GE GYSLTVTSP+ GD A AG  YTVE +DY+NG+GS  DRF+IDLY    G GDCGTYV ++CDKPSIGC DS GDYDVEIP DTP+G YS+RVG F D+ ++DCS  F IV D  DMSM
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAA-GEVGYSLTVTSPSDGDTAMAGGVYTVE-WDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMSM 252          
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 3.120e-103
Identity = 171/255 (67.06%), Postives = 196/255 (76.86%), Query Frame = 1
Query:    1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGSGRFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDEES-DCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGDDDMSMSY 762
            MARTAF ALA GMLGAA ALEV++P+   +VVAD  YTVEWTGA SGR++IDLYYCGS+CM+D CGDWVTALCPYG+DGCPD +GDYD+VMPEPM   S SGYKV V D  DE    CS  F L+AS EAP       Y ++VTSP+ GD A AG EYTVE FDYDNG+GS V+RF+IDLY + G GDCGTYVT+ICDKPSIGCKDS GDYDV IP  T SG YSIRVG FED+ +Y CS  F IVG + MS+ +
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGAY-VSVTSPSDGDTAMAGGEYTVE-FDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGESMSVRF 252          
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 320 bits (821), Expect = 2.760e-101
Identity = 168/236 (71.19%), Postives = 188/236 (79.66%), Query Frame = 1
Query:    1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGS-GRFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDEE-SDCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDS----MGDYDVEIPEDTPSGEYSIRVGRF 690
            MART FVALACGMLGAA AL+V TPS+ L V+ADRTYTVEWTG  S  RFEIDLYYCGSMCM+D CGDWVTALCPYGEDGCPDNEGDYDIVMPEPM   SGSGYKVRV D+ DEE +DCSD FYL+AS EAP+   EDG +L VTSP +GD+A    EYTVE FDYDNGVGS+VDRF+IDLY A+GDGDCGTYV SICDKP+IGCKDS     G + V+       G +S+ V R+
Sbjct:    2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVE-FDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLVLRY 236          
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 3.030e-83
Identity = 152/257 (59.14%), Postives = 172/257 (66.93%), Query Frame = 1
Query:    1 MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGSGRFEIDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDDE-ESDCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGDDDMSMSYSF 768
            MARTAF ALA GMLGA  ALEV +P+   ++VA  + TVEWTG  SGRF+IDLYYCGS+CM+D CGDWVTALCPYG+DGCPD +GDYD+VMPEPM   S SGYKV V D  DE +  CS  F L+AS  A                                FD+DNG GS V+RFSIDLYM+ G GDCGTYVTSICDK SIGCKDS GDYDV IP DT SG YSIRVG FED  ++ CS  F I+G +  SMS  F
Sbjct:    1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVAS--AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGES-SMSVRF 253          
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 5.140e-78
Identity = 135/187 (72.19%), Postives = 150/187 (80.21%), Query Frame = 1
Query:  181 MDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESGSGYKVRVMDVDD-EESDCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDVAEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVG 738
            ++D CG+WVTALCPYG +GCPDNEGDYDIVMPEPM   SGSGYKVRV DVD  +++DCSD FYLMAS EAP   G D   L VTSP+ GD A+AG EYTVE FDYDNGVGS+VDRF IDLY   G GDCGT+V ++CDK +IGCKDSMGDYDVEIPE    G YSIRVGRFED+ALY CSG F IVG
Sbjct:   12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVE-FDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVG 197          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1067.600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FYL2_ECTSI2.440e-14484.05EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
A0A6H5JRG9_9PHAE5.280e-12372.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFT9_9PHAE1.900e-12072.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI46_ECTSI5.670e-11272.80EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JY62_9PHAE8.960e-10766.54GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7G3F0_ECTSI6.030e-10468.24EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI3.120e-10367.06Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7FH21_ECTSI2.760e-10171.19Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KP11_9PHAE3.030e-8359.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEJ8_9PHAE5.140e-7872.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1067contigP-lacustris_contig1067:59040..62997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size2242
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1067.600.1prot_P-lacustris_contig1067.600.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1067 59040..61526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815341.0687377-CDS-P-lacustris_contig1067:59039..591431622815341.0687377-CDS-P-lacustris_contig1067:59039..59143Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1067 59040..59143 +
1693493487.3221526-CDS-P-lacustris_contig1067:59039..591431693493487.3221526-CDS-P-lacustris_contig1067:59039..59143Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1067 59040..59143 +
1622815341.0805717-CDS-P-lacustris_contig1067:59367..594491622815341.0805717-CDS-P-lacustris_contig1067:59367..59449Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1067 59368..59449 +
1693493487.3317719-CDS-P-lacustris_contig1067:59367..594491693493487.3317719-CDS-P-lacustris_contig1067:59367..59449Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1067 59368..59449 +
1622815341.091084-CDS-P-lacustris_contig1067:60205..604991622815341.091084-CDS-P-lacustris_contig1067:60205..60499Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1067 60206..60499 +
1693493487.3428352-CDS-P-lacustris_contig1067:60205..604991693493487.3428352-CDS-P-lacustris_contig1067:60205..60499Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1067 60206..60499 +
1622815341.1009858-CDS-P-lacustris_contig1067:60960..610991622815341.1009858-CDS-P-lacustris_contig1067:60960..61099Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1067 60961..61099 +
1693493487.3508015-CDS-P-lacustris_contig1067:60960..610991693493487.3508015-CDS-P-lacustris_contig1067:60960..61099Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1067 60961..61099 +
1622815341.11048-CDS-P-lacustris_contig1067:61374..615261622815341.11048-CDS-P-lacustris_contig1067:61374..61526Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1067 61375..61526 +
1693493487.3584461-CDS-P-lacustris_contig1067:61374..615261693493487.3584461-CDS-P-lacustris_contig1067:61374..61526Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1067 61375..61526 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815341.1203163-UTR-P-lacustris_contig1067:61526..629971622815341.1203163-UTR-P-lacustris_contig1067:61526..62997Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1067 61527..62997 +
1693493487.368051-UTR-P-lacustris_contig1067:61526..629971693493487.368051-UTR-P-lacustris_contig1067:61526..62997Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1067 61527..62997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1067.600.1

>prot_P-lacustris_contig1067.600.1 ID=prot_P-lacustris_contig1067.600.1|Name=mRNA_P-lacustris_contig1067.600.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=257bp
MARTAFVALACGMLGAATALEVITPSEDLVVVADRTYTVEWTGAGSGRFE
IDLYYCGSMCMDDSCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMGMESG
SGYKVRVMDVDDEESDCSDAFYLMASGEAPTTPGEDGYSLTVTSPTTGDV
AEAGEEYTVEQFDYDNGVGSKVDRFSIDLYMAEGDGDCGTYVTSICDKPS
IGCKDSMGDYDVEIPEDTPSGEYSIRVGRFEDEALYDCSGIFTIVGDDDM
SMSYSF*
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mRNA from alignment at P-lacustris_contig1067:59040..62997+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1067.600.1 ID=mRNA_P-lacustris_contig1067.600.1|Name=mRNA_P-lacustris_contig1067.600.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3958bp|location=Sequence derived from alignment at P-lacustris_contig1067:59040..62997+ (Pleurocladia lacustris SAG_25_93)
ATGGCTCGCACTGCTTTTGTCGCTCTGGCCTGCGGTATGCTCGGCGCTGC CACCGCCCTCGAAGTGATAACGCCCTCGGAAGACCTCGTGGTCGTGGCAG ACAGGTAAAGCGAGAGAACTTGCCCGCCTGCACGGCTTACCGTGCCACGT CCTTGGATCGTGAATCCTTCTCTACCCCGGCCTTGTTTTTTGCTGTGTCG GTCCTTGCTTTCCCGATAACTTCGAATCGCTTCTGATTCGTTTATTGTGT GCCGTCGAATTCCGTTGAACCGGACCCGCCTAACATCCCTTTTGCCACGT GGCCTGTCTCATGTGATCTCCTCGCCAGGACCTACACTGTGGAATGGACT GGGGCGGGCTCCGGACGCTTCGAGATCGACCTCTACTACTGCGGCTCGAT GTGCATGGATGTAAGGATCTTCGACCCTGTTTGAGAAAACATCTTCTCTT TCCGTTTTTTTAGTCGCACGGTAACCCATCTCAATCTTCTCATAAGTCAA AGCAGCAGACTGAAATTCTGCTGGGGAGTAGTTGATTATATCGCGAACAA CTTGTTTTCCAGTGATCCTCGGCACATAGAACGAAAACTCTCTGTGGGGA ACGGGCTGAACAGCAACTCTGGTTGGCCAGTGTCTGTAATCTGAAATCTG CGGTGGTGTCGATCCACGTGTAGGCCACGTCAGCAAATGCATCAGGTGGC TATGAATGAAATTTGTGGACCAAGTAAGAAACAGCAGGGATAGATGATTT GGGGTATGGACGTATCTGTAGGCATTCCCGATGTAGCCGCGCCTCCGAAC GGCTTCTCTCTCCTCTGTGTGGTTTCGGTTTTACGGAGCTCTATTATGAG TTACAGCTGCTCGTTCGCTTGGTTATTTGTCTCTTTTTTCAGTCGAGTTC GGCGTGATGTGTTCATCGTCGCGGAAAAGAGATGAACGTTCGCAAAGCAG AAATCAGTCGAGAAATGCATTCAAGGAAACAGGCCAAGTCCAATCGTAAC CACATGCCTGTACACCGAAGGCGTCCAAATAGTTGGGTTTCTCTAGCGCG AGGTCAGTTGCCGTAAATCTGGCCTGCTTCTATCGTGGGCATGTTTTCCG CGCTCGGAACACAAAAGGTAATTCTGATTTTCGCCATGTGATAATTCGCT CTTGTAACCCGATCAGGACTCTTGCGGTGACTGGGTGACGGCCCTGTGCC CTTACGGCGAGGACGGATGCCCCGACAACGAGGGCGACTACGACATCGTC ATGCCGGAGCCGATGGGCATGGAGTCTGGCTCCGGCTACAAGGTTCGCGT GATGGACGTGGATGACGAGGAGTCGGACTGCTCCGACGCATTCTACCTCA TGGCTTCGGGAGAGGCACCAACCACCCCCGGAGAAGACGGATACTCTCTC ACCGTCACTTCGCCCACCACGGGTGATGTCGCCGAGGCTGGCGAGGAGTA CACCGTCGAGGTGAGGGAGATGGCATCGGGCAATATTTTCCGTTTTCTTC TCGCACATGAATGTCGATAAGCTGTATGATCATTTCGTTTTACATCGTAC AGCAGTACCGTGACCTACACCGCGGCCTCTTGGACGGCCTTTCAAAATGC TGGTAGAAATCATGGTATGCTGTTGTGCTTGAGTGTTGCCTCGGAACCAG CCGGACCCGGCGACTCAAGGGTTGTAGATCGAGATGCAAAAGGCAGGCAG TGACACCAAGACAATCTACGGCAACCGCATAAGGCTTGTGGAGGGCCCCA CGAAATGGAGCCATAAAGTGTGACTCTGGCTGGTTAAATACCTCTCATTA TCGCCGAAAGCTGTAACGAAAGGCCGCTGCTGTAGCGTCCTCAAAATAGG ATGAAAAAAAACTCATTTTGCCATGCGCTTACTCAATATATTACCTGCTG TTGCGTCTGCGCTCGACTGAGCAGTTCGACTACGACAACGGCGTTGGCTC CAAGGTGGACCGATTCTCGATCGACCTGTACATGGCGGAGGGAGACGGTG ACTGCGGCACCTACGTGACCTCCATCTGCGACAAGCCGTCCATCGGCTGC AAGGACTCGAGTGAGTAATAATGATCATCACGCACATGTCGCAATGTGCG TACGGGCGAACCCATCCTCATACCCACCCCATTGAGTGGTGCTTCGGTGC CCAAATGAATCGCATCTACCGCAACATGTCCTAATCCGAAGAAGCAAGTT GCCTACCCTCCTGACACACATTCTTTTCTTTTCGACATAACGGTTCGGAA TGATAGCATGTACGCAATGATAACGACAAATAACCATCACCTCCGACTCC CCACACCTGTGCTCGGTACGCTTTCCGAATTGTAGTGGGCGACTACGATG TGGAGATCCCCGAGGACACCCCGTCTGGCGAGTACTCGATCCGAGTCGGC CGCTTCGAAGACGAGGCGTTGTACGACTGCTCTGGCATCTTCACCATCGT CGGTGACGATGACATGAGCATGTCCTACTCCTTTTAAGTATGAAGGGAAG CTTTCGAGGCGTTTAGAGGCTCCCTGCTTGTTTCGAGTCAACACGAGAGC GGCTAGTCTCGCACGTCTTTCTAGTTCAAAATAGAGTTTTGTATGTTTGC TCGTTCATGCATTCGCGAGCAAGCCGATGGTACCATTCTTGTATTTGTGA TGGTTCGGGGGAATATTTCTTTGTCTCGGGCCCGTAGTTCTAGCAAGGCC GCGCTTGCGCTGCAGTTTTGATGTTTCATTTTCTATTGTATTGCCCCCTC CCCTCCCTTTGAGAGGGTAATCGGAGCGTCGTGGCAGTAACAAATTTGGT TTGTGCTACTAGCAGGAGCTGTGGCTGCTACAGGCGCCTCAACTTTAAAT ACGGTGTACGGTGCAGTAGTTGCTGTGTTGAGGAGTGATGTACGAAAGTA GACGTGAGGATACCTTTTTGAAACAACATTCGCGTGTCGGGGACATGTCG TCTGATGTGTTGGCATTCCGTCCAAAGGTTCGGAATCACCTGTCTTTTGG GACGGTCTATGGGTTGCGCTTGTGTGTTTTTAGGTTGCCCGAAGAATGAT GGTTTCGCGTTCCGAAATTTGAGGTAACAGCCGCCTCATGCAGGGGTGGC TGTGAAGCGTTCCTATCCTGAGTTTCGATGCGATTCTCGCAGCACACTTT TCGGGCTGAGAGGTTTTCTGGTTGTTGGATGTAAAAATAGGGAAACGTTA GCTCGTTCATGCTATCGCGAGCTAGTGGTACTTTTCCTGTCCTGGGACTC TTGTTTTGAATGCTTTACGCCCCCCAGCGCCACATGCGCTATATTTGTGG TGTACTTGTCTGTTGACCCCTCCCTTTGAGAGGGGAAAATCGGACGTCGT GGCATTAAACGGGTTTATTGGATAGCTCAGCTGGAGCTGTGTGTGCCAAG TGTGGGCTTCGCTAGGATGTGCGTCCAGCACGTGCTGTGGTACACAACGG ACGAATGCGTCAAAGTATGCGAGCCCTTGCTCGGAAAGAAGTTCAATACA TTCGTCCAGCCAATCAACAGCCGGCGCCGTTCTCCCCGTAGCTTGTCGCT TGGGGGTGGTTCATGCGCCGGTAGGGTATACCCACATTTTTTTATAAAAG TTTGGCTGTGGTTCCATGCCATTGCTAGCTTGCTAGCATGGCATGAAGAC TAGGCAGTATAGACTTTTTTTCATGCAACAGTTTTTTTTAGGTTTCTGCG CATGTAGCTAATATTTGCACACATACACGCCGCACACGGTGCACCCAAGG CGTGATGACGCTGCACGATCAGCTTCCTTCGCACAGGTTCAAGGTATCAC ATCGTTGTTACGCAGCAGCCCGCGGCCGCACTGCCTACATGGATTGTCAT AATTGGACAGGATTCGCTCCCCGCCACTCTTCCTTTCGGAAACGAGAGCT TTAAACACATTCAGCATTGACGGGGAGCGAGGGGCTAAAAATAATACGAC TCTTTGAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1067:59040..62997+

>mRNA_P-lacustris_contig1067.600.1 ID=mRNA_P-lacustris_contig1067.600.1|Name=mRNA_P-lacustris_contig1067.600.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1542bp|location=Sequence derived from alignment at P-lacustris_contig1067:59040..62997+ (Pleurocladia lacustris SAG_25_93)
ATGGCTCGCACTGCTTTTGTCGCTCTGGCCTGCGGTATGCTCGGCGCTGC
CACCGCCCTCGAAGTGATAACGCCCTCGGAAGACCTCGTGGTCGTGGCAG
ACAGATGGCTCGCACTGCTTTTGTCGCTCTGGCCTGCGGTATGCTCGGCG
CTGCCACCGCCCTCGAAGTGATAACGCCCTCGGAAGACCTCGTGGTCGTG
GCAGACAGGACCTACACTGTGGAATGGACTGGGGCGGGCTCCGGACGCTT
CGAGATCGACCTCTACTACTGCGGCTCGATGTGCATGGATGACCTACACT
GTGGAATGGACTGGGGCGGGCTCCGGACGCTTCGAGATCGACCTCTACTA
CTGCGGCTCGATGTGCATGGATGACTCTTGCGGTGACTGGGTGACGGCCC
TGTGCCCTTACGGCGAGGACGGATGCCCCGACAACGAGGGCGACTACGAC
ATCGTCATGCCGGAGCCGATGGGCATGGAGTCTGGCTCCGGCTACAAGGT
TCGCGTGATGGACGTGGATGACGAGGAGTCGGACTGCTCCGACGCATTCT
ACCTCATGGCTTCGGGAGAGGCACCAACCACCCCCGGAGAAGACGGATAC
TCTCTCACCGTCACTTCGCCCACCACGGGTGATGTCGCCGAGGCTGGCGA
GGAGTACACCGTCGAGGACTCTTGCGGTGACTGGGTGACGGCCCTGTGCC
CTTACGGCGAGGACGGATGCCCCGACAACGAGGGCGACTACGACATCGTC
ATGCCGGAGCCGATGGGCATGGAGTCTGGCTCCGGCTACAAGGTTCGCGT
GATGGACGTGGATGACGAGGAGTCGGACTGCTCCGACGCATTCTACCTCA
TGGCTTCGGGAGAGGCACCAACCACCCCCGGAGAAGACGGATACTCTCTC
ACCGTCACTTCGCCCACCACGGGTGATGTCGCCGAGGCTGGCGAGGAGTA
CACCGTCGAGCAGTTCGACTACGACAACGGCGTTGGCTCCAAGGTGGACC
GATTCTCGATCGACCTGTACATGGCGGAGGGAGACGGTGACTGCGGCACC
TACGTGACCTCCATCTGCGACAAGCCGTCCATCGGCTGCAAGGACTCGAC
AGTTCGACTACGACAACGGCGTTGGCTCCAAGGTGGACCGATTCTCGATC
GACCTGTACATGGCGGAGGGAGACGGTGACTGCGGCACCTACGTGACCTC
CATCTGCGACAAGCCGTCCATCGGCTGCAAGGACTCGATGGGCGACTACG
ATGTGGAGATCCCCGAGGACACCCCGTCTGGCGAGTACTCGATCCGAGTC
GGCCGCTTCGAAGACGAGGCGTTGTACGACTGCTCTGGCATCTTCACCAT
CGTCGGTGACGATGACATGAGCATGTCCTACTCCTTTTAATGGGCGACTA
CGATGTGGAGATCCCCGAGGACACCCCGTCTGGCGAGTACTCGATCCGAG
TCGGCCGCTTCGAAGACGAGGCGTTGTACGACTGCTCTGGCATCTTCACC
ATCGTCGGTGACGATGACATGAGCATGTCCTACTCCTTTTAA
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