mRNA_P-lacustris_contig1064.588.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1064.588.1
Unique NamemRNA_P-lacustris_contig1064.588.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1064.588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1064contigP-lacustris_contig1064:63822..64314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size493
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815335.6664433-CDS-P-lacustris_contig1064:63821..643131622815335.6664433-CDS-P-lacustris_contig1064:63821..64313Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1064 63822..64313 +
1693493484.042285-CDS-P-lacustris_contig1064:63821..643131693493484.042285-CDS-P-lacustris_contig1064:63821..64313Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1064 63822..64313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1064.588.1prot_P-lacustris_contig1064.588.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1064 63822..64313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1064.588.1

>prot_P-lacustris_contig1064.588.1 ID=prot_P-lacustris_contig1064.588.1|Name=mRNA_P-lacustris_contig1064.588.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=164bp
KGCFSSFALSVAFFSEEASAEPVAAAGNGRAWVAHAVYALSVREWHRTWL
GRDASTCTKIIRGQTPPFTVSTATAVSSQPPTRENNRLSSNPAAVETQAN
FVSGLVSKSARRRWRMGRAFTSPITNCVQMCSKKSPSILKPFGFQCLLRL
KKKLYRILTPVFDP
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mRNA from alignment at P-lacustris_contig1064:63822..64314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1064.588.1 ID=mRNA_P-lacustris_contig1064.588.1|Name=mRNA_P-lacustris_contig1064.588.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=493bp|location=Sequence derived from alignment at P-lacustris_contig1064:63822..64314+ (Pleurocladia lacustris SAG_25_93)
AAAGGTTGTTTTTCCAGCTTCGCGCTTTCTGTCGCGTTTTTTTCTGAGGA
AGCTTCAGCGGAGCCTGTGGCCGCCGCCGGCAATGGGCGTGCATGGGTGG
CCCATGCTGTGTATGCGCTGAGTGTACGCGAATGGCATCGAACATGGTTG
GGCCGTGATGCATCCACGTGTACGAAAATTATTCGGGGGCAAACACCCCC
TTTCACAGTGTCCACTGCTACTGCTGTTTCTTCTCAACCGCCCACTAGAG
AAAACAACAGGCTATCGTCGAATCCTGCAGCAGTTGAGACACAAGCCAAC
TTTGTGTCGGGACTTGTGTCAAAATCGGCTCGCCGCCGCTGGCGCATGGG
GCGTGCATTTACCTCACCCATTACGAATTGTGTTCAAATGTGTTCAAAGA
AGAGTCCATCCATTCTGAAGCCCTTTGGGTTTCAGTGTCTGTTGCGCCTA
AAAAAAAAACTCTATAGAATCCTGACCCCAGTTTTTGACCCCA
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Coding sequence (CDS) from alignment at P-lacustris_contig1064:63822..64314+

>mRNA_P-lacustris_contig1064.588.1 ID=mRNA_P-lacustris_contig1064.588.1|Name=mRNA_P-lacustris_contig1064.588.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=984bp|location=Sequence derived from alignment at P-lacustris_contig1064:63822..64314+ (Pleurocladia lacustris SAG_25_93)
AAAGGTTGTTTTTCCAGCTTCGCGCTTTCTGTCGCGTTTTTTTCTGAGGA
AGCTTCAGCGGAGCCTGTGGCCGCCGCCGGCAATGGGCGTGCATGGGTGG
CCCATGCTGTGTATGCGCTGAGTGTACGCGAATGGCATCGAACATGGTTG
GGCCGTGATGCATCCACGTGTACGAAAATTATTCGGGGGCAAACACCCCC
TTTCACAGTGTCCACTGCTACTGCTGTTTCTTCTCAACCGCCCACTAGAG
AAAACAACAGGCTATCGTCGAATCCTGCAGCAGTTGAGACACAAGCCAAC
TTTGTGTCGGGACTTGTGTCAAAATCGGCTCGCCGCCGCTGGCGCATGGG
GCGTGCATTTACCTCACCCATTACGAATTGTGTTCAAATGTGTTCAAAGA
AGAGTCCATCCATTCTGAAGCCCTTTGGGTTTCAGTGTCTGTTGCGCCTA
AAAAAAAAACTCTATAGAATCCTGACCCCAGTTTTTGACCCCAAAGGTTG
TTTTTCCAGCTTCGCGCTTTCTGTCGCGTTTTTTTCTGAGGAAGCTTCAG
CGGAGCCTGTGGCCGCCGCCGGCAATGGGCGTGCATGGGTGGCCCATGCT
GTGTATGCGCTGAGTGTACGCGAATGGCATCGAACATGGTTGGGCCGTGA
TGCATCCACGTGTACGAAAATTATTCGGGGGCAAACACCCCCTTTCACAG
TGTCCACTGCTACTGCTGTTTCTTCTCAACCGCCCACTAGAGAAAACAAC
AGGCTATCGTCGAATCCTGCAGCAGTTGAGACACAAGCCAACTTTGTGTC
GGGACTTGTGTCAAAATCGGCTCGCCGCCGCTGGCGCATGGGGCGTGCAT
TTACCTCACCCATTACGAATTGTGTTCAAATGTGTTCAAAGAAGAGTCCA
TCCATTCTGAAGCCCTTTGGGTTTCAGTGTCTGTTGCGCCTAAAAAAAAA
ACTCTATAGAATCCTGACCCCAGTTTTTGACCCC
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