mRNA_P-lacustris_contig1063.581.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1063.581.1
Unique NamemRNA_P-lacustris_contig1063.581.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1063.581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1063contigP-lacustris_contig1063:67266..67549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size189
Cds size153
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1063.581.1prot_P-lacustris_contig1063.581.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1063 67266..67513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815334.1058972-CDS-P-lacustris_contig1063:67265..673661622815334.1058972-CDS-P-lacustris_contig1063:67265..67366Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1063 67266..67366 -
1693493483.2609-CDS-P-lacustris_contig1063:67265..673661693493483.2609-CDS-P-lacustris_contig1063:67265..67366Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1063 67266..67366 -
1622815334.1163435-CDS-P-lacustris_contig1063:67461..675131622815334.1163435-CDS-P-lacustris_contig1063:67461..67513Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1063 67462..67513 -
1693493483.2719738-CDS-P-lacustris_contig1063:67461..675131693493483.2719738-CDS-P-lacustris_contig1063:67461..67513Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1063 67462..67513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815334.1302493-UTR-P-lacustris_contig1063:67513..675491622815334.1302493-UTR-P-lacustris_contig1063:67513..67549Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1063 67514..67549 -
1693493483.282245-UTR-P-lacustris_contig1063:67513..675491693493483.282245-UTR-P-lacustris_contig1063:67513..67549Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1063 67514..67549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1063.581.1

>prot_P-lacustris_contig1063.581.1 ID=prot_P-lacustris_contig1063.581.1|Name=mRNA_P-lacustris_contig1063.581.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=51bp
MIGIVIVIGFVLLGREGDDAGTCLLSGHLLCGPLAVWSASCLVWGCVIAL
*
back to top

mRNA from alignment at P-lacustris_contig1063:67266..67549-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1063.581.1 ID=mRNA_P-lacustris_contig1063.581.1|Name=mRNA_P-lacustris_contig1063.581.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=284bp|location=Sequence derived from alignment at P-lacustris_contig1063:67266..67549- (Pleurocladia lacustris SAG_25_93)
AGCTGAAGGGCTAGAGTCTAACACTACATCCATAAGATGATCGGCATCGT
CATCGTCATCGGGTTTGTGCTCTTGGGCAGGGAAGGAGGTGCCCACAGCG
CGAGGGCTATCGTCATCGTCACCTATCCACAGGTCCGTGTCACTACCGGC
GCAGTCGTCACCTCCTCCGCACTCTTGAAGGAGATGATGCAGGGACATGT
CTGCTGTCTGGGCATCTGCTGTGTGGACCGCTGGCTGTGTGGTCTGCTTC
GTGCTTGGTGTGGGGCTGTGTGATTGCCCTCTGA
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1063:67266..67549-

>mRNA_P-lacustris_contig1063.581.1 ID=mRNA_P-lacustris_contig1063.581.1|Name=mRNA_P-lacustris_contig1063.581.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=306bp|location=Sequence derived from alignment at P-lacustris_contig1063:67266..67549- (Pleurocladia lacustris SAG_25_93)
ATGATCGGCATCGTCATCGTCATCGGGTTTGTGCTCTTGGGCAGGGAAGG
AGATGATCGGCATCGTCATCGTCATCGGGTTTGTGCTCTTGGGCAGGGAA
GGAGATGATGCAGGGACATGTCTGCTGTCTGGGCATCTGCTGTGTGGACC
GCTGGCTGTGTGGTCTGCTTCGTGCTTGGTGTGGGGCTGTGTGATTGCCC
TCTGAATGATGCAGGGACATGTCTGCTGTCTGGGCATCTGCTGTGTGGAC
CGCTGGCTGTGTGGTCTGCTTCGTGCTTGGTGTGGGGCTGTGTGATTGCC
CTCTGA
back to top