mRNA_P-lacustris_contig1063.580.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1063.580.1
Unique NamemRNA_P-lacustris_contig1063.580.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1063.580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1063contigP-lacustris_contig1063:59788..60305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size495
Cds size396
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815334.0399473-UTR-P-lacustris_contig1063:59787..598451622815334.0399473-UTR-P-lacustris_contig1063:59787..59845Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1063 59788..59845 +
1693493483.2195978-UTR-P-lacustris_contig1063:59787..598451693493483.2195978-UTR-P-lacustris_contig1063:59787..59845Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1063 59788..59845 +
1622815334.0728514-UTR-P-lacustris_contig1063:60264..603051622815334.0728514-UTR-P-lacustris_contig1063:60264..60305Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1063 60265..60305 +
1693493483.2479546-UTR-P-lacustris_contig1063:60264..603051693493483.2479546-UTR-P-lacustris_contig1063:60264..60305Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1063 60265..60305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815334.0504103-CDS-P-lacustris_contig1063:59845..600141622815334.0504103-CDS-P-lacustris_contig1063:59845..60014Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1063 59846..60014 +
1693493483.2298462-CDS-P-lacustris_contig1063:59845..600141693493483.2298462-CDS-P-lacustris_contig1063:59845..60014Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1063 59846..60014 +
1622815334.061082-CDS-P-lacustris_contig1063:60037..602641622815334.061082-CDS-P-lacustris_contig1063:60037..60264Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1063 60038..60264 +
1693493483.2390084-CDS-P-lacustris_contig1063:60037..602641693493483.2390084-CDS-P-lacustris_contig1063:60037..60264Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1063 60038..60264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1063.580.1prot_P-lacustris_contig1063.580.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1063 59846..60264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1063.580.1

>prot_P-lacustris_contig1063.580.1 ID=prot_P-lacustris_contig1063.580.1|Name=mRNA_P-lacustris_contig1063.580.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=132bp
MASAVEKGVGVPTSDSFPFLSLLSTKAQTLHRNPTQSATTRRLRGTPESP
AAYSCATGKLVGMSRGSQAPLTTRIGGKRSSTLEQGFKLRSSRCMCVMGP
LLPSQTTASSYMRRLYHRSHRLRYFIALTFF*
back to top

mRNA from alignment at P-lacustris_contig1063:59788..60305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1063.580.1 ID=mRNA_P-lacustris_contig1063.580.1|Name=mRNA_P-lacustris_contig1063.580.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=518bp|location=Sequence derived from alignment at P-lacustris_contig1063:59788..60305+ (Pleurocladia lacustris SAG_25_93)
GCTGAATTTCCAGTTTCCTACCCAATCTTGTGACCCCGAAGTCTCGGTAT
ACCAGTAAATGGCAAGCGCTGTGGAAAAAGGGGTGGGCGTGCCCACAAGT
GACTCATTTCCTTTTTTATCATTGTTATCCACAAAAGCACAAACGTTACA
TCGAAACCCGACGCAAAGTGCTACAACACGGCGTCTCCGAGGCACACCGG
AGTCCCCAGCTGCGTATTCATGTGCAACGGGCAAGAAAGCCGCATACGCG
CTGGCAAGTTGGTCGGCATGAGCCGTGGCAGCCAGGCTCCTCTGACCACC
CGAATTGGCGGAAAACGCTCAAGTACTTTAGAACAAGGTTTTAAGCTGAG
AAGCAGCAGATGCATGTGTGTCATGGGTCCGCTGCTGCCGTCTCAAACGA
CTGCATCAAGCTATATGCGTCGTTTATACCATCGTTCACATCGCTTGCGC
TATTTCATAGCGCTCACTTTCTTCTGAGAAAGCGTACGTAGTTGAAGGCT
GCTGATGTCGCCGGTTCC
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1063:59788..60305+

>mRNA_P-lacustris_contig1063.580.1 ID=mRNA_P-lacustris_contig1063.580.1|Name=mRNA_P-lacustris_contig1063.580.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=792bp|location=Sequence derived from alignment at P-lacustris_contig1063:59788..60305+ (Pleurocladia lacustris SAG_25_93)
ATGGCAAGCGCTGTGGAAAAAGGGGTGGGCGTGCCCACAAGTGACTCATT
TCCTTTTTTATCATTGTTATCCACAAAAGCACAAACGTTACATCGAAACC
CGACGCAAAGTGCTACAACACGGCGTCTCCGAGGCACACCGGAGTCCCCA
GCTGCGTATTCATGTGCAAATGGCAAGCGCTGTGGAAAAAGGGGTGGGCG
TGCCCACAAGTGACTCATTTCCTTTTTTATCATTGTTATCCACAAAAGCA
CAAACGTTACATCGAAACCCGACGCAAAGTGCTACAACACGGCGTCTCCG
AGGCACACCGGAGTCCCCAGCTGCGTATTCATGTGCAACTGGCAAGTTGG
TCGGCATGAGCCGTGGCAGCCAGGCTCCTCTGACCACCCGAATTGGCGGA
AAACGCTCAAGTACTTTAGAACAAGGTTTTAAGCTGAGAAGCAGCAGATG
CATGTGTGTCATGGGTCCGCTGCTGCCGTCTCAAACGACTGCATCAAGCT
ATATGCGTCGTTTATACCATCGTTCACATCGCTTGCGCTATTTCATAGCG
CTCACTTTCTTCTGACTGGCAAGTTGGTCGGCATGAGCCGTGGCAGCCAG
GCTCCTCTGACCACCCGAATTGGCGGAAAACGCTCAAGTACTTTAGAACA
AGGTTTTAAGCTGAGAAGCAGCAGATGCATGTGTGTCATGGGTCCGCTGC
TGCCGTCTCAAACGACTGCATCAAGCTATATGCGTCGTTTATACCATCGT
TCACATCGCTTGCGCTATTTCATAGCGCTCACTTTCTTCTGA
back to top