mRNA_P-lacustris_contig1062.573.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1062.573.1
Unique NamemRNA_P-lacustris_contig1062.573.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1062.573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1062contigP-lacustris_contig1062:67194..67542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1062.573.1prot_P-lacustris_contig1062.573.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1062 67194..67449 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815332.9380739-CDS-P-lacustris_contig1062:67193..673621622815332.9380739-CDS-P-lacustris_contig1062:67193..67362Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 67194..67362 -
1693493482.4397159-CDS-P-lacustris_contig1062:67193..673621693493482.4397159-CDS-P-lacustris_contig1062:67193..67362Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 67194..67362 -
1622815332.9498284-CDS-P-lacustris_contig1062:67393..674491622815332.9498284-CDS-P-lacustris_contig1062:67393..67449Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 67394..67449 -
1693493482.455757-CDS-P-lacustris_contig1062:67393..674491693493482.455757-CDS-P-lacustris_contig1062:67393..67449Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 67394..67449 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815332.9630299-UTR-P-lacustris_contig1062:67449..675421622815332.9630299-UTR-P-lacustris_contig1062:67449..67542Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 67450..67542 -
1693493482.4671597-UTR-P-lacustris_contig1062:67449..675421693493482.4671597-UTR-P-lacustris_contig1062:67449..67542Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 67450..67542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1062.573.1

>prot_P-lacustris_contig1062.573.1 ID=prot_P-lacustris_contig1062.573.1|Name=mRNA_P-lacustris_contig1062.573.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=75bp
MARGYPRQSASTDGYGANSHNKFLIQKPAQRQRATAATSSSNTPHAYAQG
LNTMKRLRRQRQKGPARVIAVEVMA
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mRNA from alignment at P-lacustris_contig1062:67194..67542-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1062.573.1 ID=mRNA_P-lacustris_contig1062.573.1|Name=mRNA_P-lacustris_contig1062.573.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=349bp|location=Sequence derived from alignment at P-lacustris_contig1062:67194..67542- (Pleurocladia lacustris SAG_25_93)
TGTAGCCTGAAAAGAGAGGGTCCTCAAAAAAACAAAACAAGACAACAGGT
GAGTTGAAGCCTGTGCAGTAGTGCTCTTCTACAATTGGTGCGGATGGCTC
GTGGGTACCCGCGACAGAGTGCCAGTACCGATGGATATGGAGCCAATTCG
CAGCAGCAGCAGCACAGTTGTGAGACACAGACATAACAAATTCCTCATAC
AAAAACCAGCTCAGCGGCAGAGAGCAACAGCAGCAACCAGCAGCAGCAAC
ACTCCACATGCTTATGCTCAAGGATTGAACACCATGAAACGGCTAAGGAG
GCAGAGACAAAAGGGTCCCGCTAGGGTCATTGCGGTCGAGGTCATGGCT
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Coding sequence (CDS) from alignment at P-lacustris_contig1062:67194..67542-

>mRNA_P-lacustris_contig1062.573.1 ID=mRNA_P-lacustris_contig1062.573.1|Name=mRNA_P-lacustris_contig1062.573.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=450bp|location=Sequence derived from alignment at P-lacustris_contig1062:67194..67542- (Pleurocladia lacustris SAG_25_93)
ATGGCTCGTGGGTACCCGCGACAGAGTGCCAGTACCGATGGATATGGAGC
CAATTCATGGCTCGTGGGTACCCGCGACAGAGTGCCAGTACCGATGGATA
TGGAGCCAATTCACATAACAAATTCCTCATACAAAAACCAGCTCAGCGGC
AGAGAGCAACAGCAGCAACCAGCAGCAGCAACACTCCACATGCTTATGCT
CAAGGATTGAACACCATGAAACGGCTAAGGAGGCAGAGACAAAAGGGTCC
CGCTAGGGTCATTGCGGTCGAGGTCATGGCTACATAACAAATTCCTCATA
CAAAAACCAGCTCAGCGGCAGAGAGCAACAGCAGCAACCAGCAGCAGCAA
CACTCCACATGCTTATGCTCAAGGATTGAACACCATGAAACGGCTAAGGA
GGCAGAGACAAAAGGGTCCCGCTAGGGTCATTGCGGTCGAGGTCATGGCT
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