mRNA_P-lacustris_contig1062.569.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1062.569.1
Unique NamemRNA_P-lacustris_contig1062.569.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1062.569.1 vs. uniprot
Match: D8LFB8_ECTSI (Protein SDA1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFB8_ECTSI)

HSP 1 Score: 697 bits (1799), Expect = 3.230e-238
Identity = 402/497 (80.89%), Postives = 423/497 (85.11%), Query Frame = 1 
Query:    1 DKALRVMLYDHIVNDIKSINEKGSNPKLNKSIQNLVFTMLKDDSEIAAKKSLDIMVVLYRKRVWVDARTVNVIASALLADTPKLACTALNFFLNIDTIMADDDDDEGKAENALGQVNLHAHSKKTAKRARDVHKQVKVNKKKNKAALSDESSGGLFPAINLLHDPQGTVEKVFRRLRQSKQRFEVKLLMMNFISRAVGAHRLLLLPFYSHLQRYVASQQREVTHILAYLVQACHDLVPPDEVMPVIKAVAYNFVTERCPGEVMALGINSIREVARRIPALLEEEGMDVLVLDLAAYSKHVDKSVVVAARGFINFVRETYPSLLKSRDRGREHDISARPAKYGASSVAEGVDGADLLTLHEQGLMPLDDDTDNVDGDEGDD-------QEAPQLVTLAEVGSGDEEEMWEXXXXXXXXXXXXXXGSRPSKRARVPDKGTAESREENMNEMEVGLEEGK-RKGGVKFASEVKRSDGPGPN----VGPSPRARQRRRIKS 1455
            DK LRVMLYDHIVNDIKSINEKG NPKLNK+IQNLVFTMLKDDSEIAAKKSLDIMVVLYRKRVWVDARTVNVIA+ALLADTPKLACTALNFFLNIDT+MADDDD+EGKAE A  QVN H HSKKTAKRAR V KQVK NKKKNKAALSDES+GGLFPAINLLHDPQGTVEKVFRRLRQSKQRFEVKLLMMNFISR VGAHRLLLLPFYSHLQRYVASQQREVTHILAYLVQACHDLVPPDEVMPVIKAVAYNFVTERCPGEVMALGINSIREVARRIPALLEEEGMDVLV+DLAAYSKH DKSVVVAARGFINFVRETYPSLLKSRDRGREHDI+ARPAKYG+ SV+EGVDGADLLTLHEQGLMPL+ D                  +E PQLV++ E G   E E  E XXXXXXXXXXXXX  RPSKRARV DKG          + + G EEG+ RK GV F SE K +DGPGPN     GP+ +   R+R+ S
Sbjct:  135 DKMLRVMLYDHIVNDIKSINEKGRNPKLNKTIQNLVFTMLKDDSEIAAKKSLDIMVVLYRKRVWVDARTVNVIATALLADTPKLACTALNFFLNIDTMMADDDDEEGKAETAQAQVNTHEHSKKTAKRARSVQKQVKTNKKKNKAALSDESNGGLFPAINLLHDPQGTVEKVFRRLRQSKQRFEVKLLMMNFISRVVGAHRLLLLPFYSHLQRYVASQQREVTHILAYLVQACHDLVPPDEVMPVIKAVAYNFVTERCPGEVMALGINSIREVARRIPALLEEEGMDVLVVDLAAYSKHADKSVVVAARGFINFVRETYPSLLKSRDRGREHDITARPAKYGSRSVSEGVDGADLLTLHEQGLMPLEKDDXXXXXXXXXXXXXXXXXEEVPQLVSMPEDGM--EVEGVEEXXXXXXXXXXXXXXXRPSKRARVSDKG---------GKGKKGEEEGQGRKKGVNFTSETKVADGPGPNGPVDPGPTTKVPLRQRVDS 620
[Close]
BLAST of mRNA_P-lacustris_contig1062.569.1 vs. uniprot
Match: A0A835Z7A4_9STRA (Protein SDA1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7A4_9STRA)

HSP 1 Score: 452 bits (1163), Expect = 3.730e-144
Identity = 230/365 (63.01%), Postives = 292/365 (80.00%), Query Frame = 1 
Query:    1 DKALRVMLYDHIVNDIKSINEKGSNPKLNKSIQNLVFTMLKDDSEIAAKKSLDIMVVLYRKRVWVDARTVNVIASALLADTPKLACTALNFFLNIDTIMADDDD-DEGKAENALGQVNLHAHSKKTAKRARDVHKQVKVNKKKNKAALSDESSGGLFPAINLLHDPQGTVEKVFRRLRQSKQRFEVKLLMMNFISRAVGAHRLLLLPFYSHLQRYVASQQREVTHILAYLVQACHDLVPPDEVMPVIKAVAYNFVTERCPGEVMALGINSIREVARRIPALLEEEGMDVLVLDLAAYSKHVDKSVVVAARGFINFVRETYPSLLKSRDRGREHDISARPAKYGASSVAEGVDGADLLTLHEQGLM 1092
            DK+LR +L+DH V+DI++IN K  N K+N+++Q  ++TML+D+SE AAKKSLD+MV LY++RVW DARTVNVIA+AL +   KL  TALNFFL+ID  M +++D DE + + A  +V +H H+KKT+  AR + KQVK  KKK  A   DE   GLFPAINLL+DPQGT EKVF+RLR S +RFEVKLLMMNFISR + AH+LL+LPFYS LQRY+ S QREVTHILAYLVQACH LVPPD+++P+IKA+A+N VTERC G+VMA+GINSI+E+ RR+PA L E+GMD    D+AAY+K  DKSVV+AARGF N VRE +P LL++RDRG+ HDISA+PA+YG   V EGVDGA+LLTL + G++
Sbjct:  135 DKSLRQLLFDHTVSDIRAINLKARNEKMNRTLQAFMYTMLQDESETAAKKSLDVMVELYKRRVWTDARTVNVIAAALDSSVTKLVTTALNFFLSIDAKMEEEEDADEAEGKRAP-EVEMHQHAKKTSAIARKIKKQVKERKKKLNAV--DEEKAGLFPAINLLNDPQGTAEKVFKRLRGSSERFEVKLLMMNFISRIISAHQLLMLPFYSFLQRYIQSHQREVTHILAYLVQACHPLVPPDDILPIIKAIAHNMVTERCSGDVMAVGINSIKEIIRRVPATLSEDGMDAFAQDIAAYAKSRDKSVVIAARGFTNLVREVHPRLLRARDRGKHHDISAQPAQYGEQKVLEGVDGAELLTLADAGIL 496
[Close]
BLAST of mRNA_P-lacustris_contig1062.569.1 vs. uniprot
Match: A0A7S3M8Q0_9STRA (Protein SDA1 (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8Q0_9STRA)

HSP 1 Score: 378 bits (970), Expect = 1.090e-117
Identity = 186/371 (50.13%), Postives = 271/371 (73.05%), Query Frame = 1 
Query:    1 DKALRVMLYDHIVNDIKSINEKGSNPKLNKSIQNLVFTMLKDDSEIAAKKSLDIMVVLYRKRVWVDARTVNVIASALLADTPKLACTALNFFLNIDTIMADDDDDE-GKAENALGQVNLHAHSKKTAKRARDVHKQVKVNKKKNKAALSDESSGG-LFPAINLLHDPQGTVEKVFRRLRQSKQRFEVKLLMMNFISRAVGAHRLLLLPFYSHLQRYVASQQREVTHILAYLVQACHDLVPPDEVMPVIKAVAYNFVTERCPGEVMALGINSIREVARRIPALLEEEGMDVLVLDLAAYSKHVDKSVVVAARGFINFVRETYPSLLKSRDRGREHDISARPAKYGASSVAEGVDGADLLTLHEQGLMPLDDD 1107
            DK LR  L ++I NDIK+IN +  N KLN+SIQ  +F+++++D+ I A+K+++I+  LYR+++W DARTVN+I  A L+ + ++   A+NFFL I+  M +D+++E    +     VN H+HSKKT KRAR V KQ++ N K  + +  + S+   LFPAI +LHDPQ   EK+F++LRQS +RFEVKLL+MNF+SR +G H+LLLL FYS LQRY+ S Q+++T ILAYL+Q CH+L+PP++++P++KA+AYNF+TERC  E +A+GIN++RE+  R PALL E GM   V DLA Y +   KSV++AA G +N VRE YP+LLK  DRG+ H+ +A+P +YG   VA+GV+G +LL  +E+G + L+ D
Sbjct:  131 DKTLRSSLVEYIFNDIKTINHQKQNDKLNRSIQAFLFSVVEEDTTITARKTVEILCELYRRKIWTDARTVNMIGKACLSPSTRVTVAAVNFFLGIENKMHEDEEEEKASGDKTPADVNYHSHSKKTKKRARVVQKQIEHNAKLRRDSQKESSTTTPLFPAIQMLHDPQSLAEKLFKKLRQSGERFEVKLLLMNFVSRLIGCHKLLLLSFYSFLQRYLTSHQQDITLILAYLIQGCHELIPPEDLLPIVKAIAYNFITERCTNESIAVGINAVREIIARSPALLREPGMGDFVQDLAMYGRKTHKSVMIAAHGMVNLVRELYPTLLKKGDRGKHHNPNAQPFEYGQRPVADGVEGVELLEAYERGEIELNSD 501
[Close]
BLAST of mRNA_P-lacustris_contig1062.569.1 vs. uniprot
Match: A0A5D6XJK4_9STRA (Protein SDA1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJK4_9STRA)

HSP 1 Score: 371 bits (953), Expect = 1.120e-112
Identity = 184/356 (51.69%), Postives = 266/356 (74.72%), Query Frame = 1 
Query:    1 DKALRVMLYDHIVNDIKSINEKGSNPKLNKSIQNLVFTMLKDDSEIAAKKSLDIMVVLYRKRVWVDARTVNVIASALLADTPKLACTALNFFLNIDTIMADDDDDEGKAENALGQVNLHAHSKKTAKRARDVHKQVKVNKKKNKAALSDESSGGLFPAINLLHDPQGTVEKVFRRLRQSKQRFEVKLLMMNFISRAVGAHRLLLLPFYSHLQRYVASQQREVTHILAYLVQACHDLVPPDEVMPVIKAVAYNFVTERCPGEVMALGINSIREVARRIPALLEEEGMDVLVLDLAAYSKHVDKSVVVAARGFINFVRETYPSLLKSRDRGREHDISARPAKYGASSVAEGVDGADLL 1068
            DK LR +LY HIV+DI+ +N    N K+NK++QN +F ML+D++E AA KSL ++V L++++VW D R+VNVI +A  +   KL   A+NFFL ID  + +D++++ K +  L +V+ H+HSKKT KR R+  + +K NK+  K  +  +++   FPAI +L+DPQG VEK F+ L+   +RFEVKLLMMNFISR +G H+L+LLPFY  LQRY+ S Q+ VT +LAYLVQ+CH+ +PP+E++P++K++A+NF+TERC  EV+A+GIN++REV RR+P +LE EGMDVL+ DL  YSK  DKS V+AARG +N +RE +P+LLK ++RG+ HD +A+P ++G    AEGVDG +LL
Sbjct:  133 DKRLRELLYKHIVSDIRQLNAVSKNEKVNKALQNFLFEMLQDENEQAALKSLQVLVDLFKRKVWHDQRSVNVIVTACTSKNAKLLVMAINFFLGIDEDILEDEENQKKEKKQLVEVDYHSHSKKTRKRHRETVEALKKNKRARKREVEFQAT---FPAIEMLNDPQGVVEKQFKMLKACTERFEVKLLMMNFISRVIGFHKLVLLPFYPLLQRYLQSHQQNVTQVLAYLVQSCHEDIPPEELLPLVKSIAHNFITERCSSEVIAVGINAVREVFRRVPLVLECEGMDVLIADLIMYSKSRDKSAVMAARGVLNLIREIHPTLLKRKERGKFHDGTAKPKQFGELVAAEGVDGVELL 485
[Close]
BLAST of mRNA_P-lacustris_contig1062.569.1 vs. uniprot
Match: A0A7S2CST8_9STRA (Protein SDA1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CST8_9STRA)

HSP 1 Score: 359 bits (922), Expect = 1.690e-109
Identity = 190/381 (49.87%), Postives = 265/381 (69.55%), Query Frame = 1 
Query:    1 DKALRVMLYDHIVNDIKSINEKGSNPK-LNKSIQNLVFTMLK-DDSEIAAKKSLDIMVVLYRKRVWVDARTVNVIASALLADTPKLACTALNFFLNIDTIMADDDDDEGKAENALGQVNLHAHSKKTAKRARDVHKQVKVNKKKNKAALSDESSGGLFPAINLLHDPQGTVEKVFRRLRQSKQRFEVKLLMMNFISRAVGAHRLLLLPFYSHLQRYVASQQREVTHILAYLVQACHDLVPPDEVMPVIKAVAYNFVTERCPGEVMALGINSIREVARRIPALLEEEGMDVLVLDLAAYSKHVDKSVVVAARGFINFVRETYPSLLKSRDRGREHDISARPAKYGASSVAEGVDGADLLTLHEQGLMPLDDDTDNVDGDEGD 1137
            DK LR ++  HI+NDI+  N  G N    NK +Q L+F+M++ +DSE+ AKKSLD++V LYR+R+W D  TVN IA+   +   K+  TALNFFL I++ MADDDD+     NAL +V  H HS+KT  RA    +Q K  +KK +  L +++   LFPA+ LL+DPQG  E +FR+LR S +RFEVKLL MN +SR +G+H+LLLL FYS  QRY+ S Q+ VT +L+YLVQA H LVPP +++PVIK +A NF+ +RCP EV+A+GIN +RE+  RIP++L E  MD  V D++ Y+ + +KSV +A R F+N +RE YP+LLK ++RG++H   A+P  YG S V+ GV+GADLL  +E+G + L D++    GDE D
Sbjct:   50 DKTLRALMCTHIINDIRKRNTSGGNKNNFNKKVQALLFSMIRQEDSEMRAKKSLDVVVELYRRRIWTDGATVNTIAAGCTSKHTKIMVTALNFFLGIESKMADDDDETAVDTNAL-EVKEHRHSRKTLSRAHRTERQTKWKEKKIRD-LDNKAPQALFPALQLLNDPQGLAEGLFRKLRGSNERFEVKLLAMNMVSRLIGSHQLLLLSFYSFTQRYLTSHQKHVTQVLSYLVQASHPLVPPSDMVPVIKTIANNFIADRCPEEVIAVGINGVREILSRIPSILTEPDMDDFVQDISLYAHNKNKSVTMAGRSFVNLIREEYPALLKRKERGKDHVKDAKPLAYGQSHVSTGVEGADLLEAYERGELELSDES----GDEED 424
[Close]
BLAST of mRNA_P-lacustris_contig1062.569.1 vs. uniprot
Match: A0A7S3Y5R9_HETAK (Protein SDA1 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5R9_HETAK)

HSP 1 Score: 355 bits (911), Expect = 3.590e-109
Identity = 200/385 (51.95%), Postives = 261/385 (67.79%), Query Frame = 1 
Query:    1 DKALRVMLYDHIVNDIKSINEKGSNPKLNKSIQNLVFTML-KDDSEIAAKKSLDIMVVLYRKRVWVDARTVNVIASALLADTPKLACTALNFFLNIDTIMADDDDDEGKAENALGQVNLHAHSKKTAKRARDVHKQVKVNKKKNKAALSDESSGG----LFPAINLLHDPQGTVEKVFRRLRQSKQRFEVKLLMMNFISRAVGAHRLLLLPFYSHLQRYVASQQREVTHILAYLVQACHDLVPPDEVMPVIKAVAYNFVTERCPGEVMALGINSIREVARRIPALL-------EEEG----------MDVLVLDLAAYSKHVDKSVVVAARGFINFVRETYPSLLKSRDRGREHDISARPAKYGASSVAEGVDGADLLTLHEQGL 1089
            DK LR +L+DHIV D+K +N K  +  LN+ +Q  ++ M+  + SEIAAKKSL+++V LYR+RVW DARTVN IA  + +   KL   ++NFFL ID  +ADDD      E    QV  H HSKKTAKRAR V KQ   N+++    L+ E+  G    LFPAINLLHDPQG  E+ F  L+++ QRFEV+LL MNFISR +  HRLLLLPFY++LQRYV  +Q  VT ILAYLVQ CH+LVPPDEV+  ++AVA++FV++R   +++A+G+N+IR +  R+PALL       EEEG          +   V DLA Y+K  DKSVVVAARGF+N V+E +P+LL++RDRGR+H   ARP  YG    AEGVDG +LL   E+ L
Sbjct:  111 DKNLRQLLFDHIVADVKMVNLKKKDEALNRQLQGFLYKMVGAEASEIAAKKSLEVLVELYRRRVWTDARTVNAIAQGVASPVAKLMVLSMNFFLGIDRKIADDDAAGSLYEPE--QVQTHQHSKKTAKRARHVEKQKAGNRRRR---LAKEAGKGAPEPLFPAINLLHDPQGLAERAFASLKKADQRFEVRLLQMNFISRVLAHHRLLLLPFYTYLQRYVTGKQEHVTQILAYLVQGCHELVPPDEVLACVRAVAHHFVSDRSNNDMVAVGLNTIRAIVARVPALLAVEDGGGEEEGEGAGGAGRGDLAAFVQDLAGYAKARDKSVVVAARGFVNLVKELHPALLRTRDRGRDHVKGARPLAYGEVRAAEGVDGVELLQEEEERL 490
[Close]
BLAST of mRNA_P-lacustris_contig1062.569.1 vs. uniprot
Match: H3GAV2_PHYRM (Protein SDA1 n=18 Tax=Peronosporaceae TaxID=4777 RepID=H3GAV2_PHYRM)

HSP 1 Score: 360 bits (925), Expect = 7.160e-109
Identity = 184/356 (51.69%), Postives = 261/356 (73.31%), Query Frame = 1 
Query:    1 DKALRVMLYDHIVNDIKSINEKGSNPKLNKSIQNLVFTMLKDDSEIAAKKSLDIMVVLYRKRVWVDARTVNVIASALLADTPKLACTALNFFLNIDTIMADDDDDEGKAENALGQVNLHAHSKKTAKRARDVHKQVKVNKKKNKAALSDESSGGLFPAINLLHDPQGTVEKVFRRLRQSKQRFEVKLLMMNFISRAVGAHRLLLLPFYSHLQRYVASQQREVTHILAYLVQACHDLVPPDEVMPVIKAVAYNFVTERCPGEVMALGINSIREVARRIPALLEEEGMDVLVLDLAAYSKHVDKSVVVAARGFINFVRETYPSLLKSRDRGREHDISARPAKYGASSVAEGVDGADLL 1068
            DK LR +LY HIV+DI+ +N    N K+NK++QN +F ML+D+SE AA KSL +++ L+++++W D R+VNVIA+A  +   KL   AL+FFL ID  + +D++ + K + AL  V+ H+HSKKT KR RD  + +  NKK  K  L   ++   FPAI LL+DPQG  E+  + L+   +RFEVKLLMMNFI R +G H+L++LPFY  LQRY+ S Q+ VT ILAYLVQ+CHD +PP+E+ P++K++A+NFVTERC  EV+A+GINS+RE+ RRIP LLE EGMDVLV DL  Y++  DK++V+AARG +N +R+ +P+LLK + RG+ H+ +A+P ++G    +EGVDGA+LL
Sbjct:  132 DKRLRELLYKHIVSDIRQLNATSRNVKVNKALQNFLFEMLQDESEHAAIKSLQVLMDLFKRKIWHDQRSVNVIATACTSKNTKLLVMALSFFLGIDEDILEDEEKQKKEKKALVAVDFHSHSKKTKKRQRDTLQALSKNKKARKRELDFMAT---FPAIELLNDPQGVAERQLKLLKSCTERFEVKLLMMNFIGRVLGFHKLVVLPFYPLLQRYLQSHQQNVTAILAYLVQSCHDEIPPEELHPIVKSIAHNFVTERCSSEVIAVGINSMRELFRRIPLLLECEGMDVLVSDLVQYNRARDKTIVMAARGVLNLIRDIHPALLKRKQRGKFHNEAAKPHRFGELVASEGVDGAELL 484
[Close]
BLAST of mRNA_P-lacustris_contig1062.569.1 vs. uniprot
Match: M4BF97_HYAAE (Protein SDA1 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BF97_HYAAE)

HSP 1 Score: 360 bits (924), Expect = 9.750e-109
Identity = 193/399 (48.37%), Postives = 277/399 (69.42%), Query Frame = 1 
Query:    1 DKALRVMLYDHIVNDIKSINEKGSNPKLNKSIQNLVFTMLKDDSEIAAKKSLDIMVVLYRKRVWVDARTVNVIASALLADTPKLACTALNFFLNIDTIMADDDDDEGKAENALGQVNLHAHSKKTAKRARDVHKQVKVNKKKNKAALSDESSGGLFPAINLLHDPQGTVEKVFRRLRQSKQRFEVKLLMMNFISRAVGAHRLLLLPFYSHLQRYVASQQREVTHILAYLVQACHDLVPPDEVMPVIKAVAYNFVTERCPGEVMALGINSIREVARRIPALLEEEGMDVLVLDLAAYSKHVDKSVVVAARGFINFVRETYPSLLKSRDRGREHDISARPAKYGASSVAEGVDGADLLTLHEQGLMPLDDDTDNVDGDEGDDQEAPQLVTLAEVGSGDEEE 1197
            DK LR +LY HIV+D++ +N    N K+NK++QN +F ML+D+SE AA KSL +++ L+++++W D R+VNVIA A  +   KL   AL+FFL ID  + +D++ + K + AL  V+ HAHSKKT KR RD  + +  NK+  K  L+  ++   FPAI LL+DPQG  E+  + L++  +RFEVKLLMMNFI R VG H+L+LLPFY  +QRY+ S Q+ VT ILAYLVQ+CHD +PP+E++P++K++A+NF+TERC  EV+A+GINS+RE+ RRIP LLE +G+DVLV DL  Y++  DK++V+AARG +N +RE +P LLK +DRG+ +  +A+P ++G    +EGVDGADLL   E             DGDE   Q+  ++ + A    G E+E
Sbjct:  132 DKRLRELLYKHIVSDLRQLNATSRNVKVNKALQNFLFEMLQDESEHAAIKSLQVLMELFKRKIWHDQRSVNVIAMACTSKNTKLLVMALSFFLGIDDDILEDEELQKKEKKALVAVDFHAHSKKTKKRQRDTLQALYKNKRARKRELTFMTT---FPAIELLNDPQGVAERQLKLLKRCTERFEVKLLMMNFIGRVVGFHKLVLLPFYPLVQRYLQSHQQSVTAILAYLVQSCHDEIPPEELLPIVKSIAHNFITERCSSEVIAVGINSLRELFRRIPLLLECDGIDVLVTDLIQYNRARDKTIVMAARGVLNLIREIHPVLLKRKDRGKFYSEAAKPHRFGELVASEGVDGADLLAEAEA--------AGRFDGDEN--QDGWEVASAASDVDGSEDE 517
[Close]
BLAST of mRNA_P-lacustris_contig1062.569.1 vs. uniprot
Match: F0WX60_9STRA (Protein SDA1 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WX60_9STRA)

HSP 1 Score: 352 bits (903), Expect = 1.190e-105
Identity = 195/407 (47.91%), Postives = 279/407 (68.55%), Query Frame = 1 
Query:    1 DKALRVMLYDHIVNDIKSINEKGSNPKLNKSIQNLVFTMLKDDSEIAAKKSLDIMVVLYRKRVWVDARTVNVIASALLADTPKLACTALNFFLNIDTIMADDDDDEGKAE---NALGQVNLHAHSKKTAKRARDVHKQV-KVNK-KKNKAALSDESSGGLFPAINLLHDPQGTVEKVFRRLRQSKQRFEVKLLMMNFISRAVGAHRLLLLPFYSHLQRYVASQQREVTHILAYLVQACHDLVPPDEVMPVIKAVAYNFVTERCPGEVMALGINSIREVARRIPALLEEEGMDVLVLDLAAYSKHVDKSVVVAARGFINFVRETYPSLLKSRDRGREHDISARPAKYGASSVAEGVDGADLLTLHEQG--LMPLDDDTDNVDGDEGDDQEAPQLVTLAEVGSGDEEEM 1200
            DK LR +++ +I+ +I+ +N K SN K+N++IQN ++ M++D+ E AA KSL IM+ LY+K VW D +TVNVI +A  +   KLA  A+ FFL ++ +    D++E KA+   ++  +V+ H+HSKKT KR R+    + KV + +K KA +    +   FPAI LL+DPQG +EK FR L+ S  RFEV+LLMMNFISR VG ++L+++PFYS +QRY+ S Q+ VT ILAYLVQACHD +PPDEV+ V+K++A NF+TERC  EV+A+GIN++RE+ RR+P LLE E M+V   DL  YSK  DK VV+AARG +N +RE +P+LL+ +DRG+ HD +ARP  +G S+  E VDGA+LL   E       ++D  +   G  G D ++   +   +V SGDEE+ 
Sbjct:  133 DKRLRDLVHKYILAEIRKLNAKSSNVKVNRAIQNFLYEMIQDEHEQAAIKSLQIMIELYQKHVWHDTKTVNVIVTACTSKNTKLAVMAMKFFLGMEFV----DEEEPKADPTGDSTAKVDYHSHSKKTKKRLRETKNAISKVRRARKEKAGIK---TNVCFPAIELLNDPQGIIEKQFRMLKNSIHRFEVRLLMMNFISRIVGHYKLIIIPFYSLVQRYLQSHQQNVTSILAYLVQACHDDIPPDEVLQVVKSIATNFITERCSSEVIAVGINALREIFRRVPLLLECEDMEVFTSDLIMYSKAKDKGVVMAARGVLNLIRECHPTLLRRKDRGKHHDRAARPRPFGESTAVESVDGAELLAAAEASGRFSNVEDSLEVKSGKNGSDSDSESWL---DVESGDEEDQ 529
[Close]
BLAST of mRNA_P-lacustris_contig1062.569.1 vs. uniprot
Match: A0A485LNP1_9STRA (Protein SDA1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNP1_9STRA)

HSP 1 Score: 351 bits (901), Expect = 2.450e-105
Identity = 179/358 (50.00%), Postives = 254/358 (70.95%), Query Frame = 1 
Query:    1 DKALRVMLYDHIVNDIKSINEKGS--NPKLNKSIQNLVFTMLKDDSEIAAKKSLDIMVVLYRKRVWVDARTVNVIASALLADTPKLACTALNFFLNIDTIMADDDDDEGKAENALGQVNLHAHSKKTAKRARDVHKQVKVNKKKNKAALSDESSGGLFPAINLLHDPQGTVEKVFRRLRQSKQRFEVKLLMMNFISRAVGAHRLLLLPFYSHLQRYVASQQREVTHILAYLVQACHDLVPPDEVMPVIKAVAYNFVTERCPGEVMALGINSIREVARRIPALLEEEGMDVLVLDLAAYSKHVDKSVVVAARGFINFVRETYPSLLKSRDRGREHDISARPAKYGASSVAEGVDGADLL 1068
            DK LR +LY HIV DIK ++  G   N K+ + +Q+ +F+M+ D++EIAA KSL ++V LYRKR+W DARTVN IA+A  + T ++  TA+ FFL IDT + +DD+ E        +VN H +SKKT  R +    Q+  N+K  K  L  +   G FPAI+LL+DPQG  E+  R L+ S +RFEV++LMM+FI R +G H+L++L FY  LQRY+ + Q++VT+ILAYLVQACHD +PP+E+MPV+K +A +F+ ERC  EV+A+GINS+RE+  R+P ++EE+GMD L+ DL  ++K  DK+ V+AARG +N +RE +PSLLK +DRG+ H+ +ARP  +G     EGVDGA+LL
Sbjct:  129 DKRLRELLYSHIVYDIKKMHTDGGGRNEKVMRGLQSFMFSMVSDENEIAAIKSLHVLVSLYRKRIWCDARTVNCIATACTSKTTRVMVTAIQFFLGIDTDILEDDEAEKVKVKTQVEVNYHQYSKKTKARHKATRAQLVKNRKARKRDLEHD---GTFPAIDLLNDPQGVAERQLRMLKSSNERFEVRMLMMDFIGRLIGQHKLIVLAFYPLLQRYLTAHQQKVTNILAYLVQACHDDIPPEEIMPVVKTIANSFIVERCASEVIAVGINSVREIFARVPLVMEEDGMDALLQDLIMFNKSRDKTCVIAARGVLNLIREIHPSLLKRKDRGKFHNETARPKAFGEVRALEGVDGAELL 483
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1062.569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFB8_ECTSI3.230e-23880.89Protein SDA1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A835Z7A4_9STRA3.730e-14463.01Protein SDA1 n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S3M8Q0_9STRA1.090e-11750.13Protein SDA1 (Fragment) n=1 Tax=Spumella elongata ... [more]
A0A5D6XJK4_9STRA1.120e-11251.69Protein SDA1 n=1 Tax=Pythium brassicum TaxID=14850... [more]
A0A7S2CST8_9STRA1.690e-10949.87Protein SDA1 n=1 Tax=Dictyocha speculum TaxID=3568... [more]
A0A7S3Y5R9_HETAK3.590e-10951.95Protein SDA1 (Fragment) n=1 Tax=Heterosigma akashi... [more]
H3GAV2_PHYRM7.160e-10951.69Protein SDA1 n=18 Tax=Peronosporaceae TaxID=4777 R... [more]
M4BF97_HYAAE9.750e-10948.37Protein SDA1 n=1 Tax=Hyaloperonospora arabidopsidi... [more]
F0WX60_9STRA1.190e-10547.91Protein SDA1 n=1 Tax=Albugo laibachii Nc14 TaxID=8... [more]
A0A485LNP1_9STRA2.450e-10550.00Protein SDA1 n=1 Tax=Aphanomyces stellatus TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1062contigP-lacustris_contig1062:12818..22049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score690.3
Seed ortholog evalue6.7e-196
Seed eggNOG ortholog2880.D8LFB8
Preferred nameSDAD1
KEGG koko:K14856
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000055,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007089,GO:0007346,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0010564,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0022613,GO:0030029,GO:0030036,GO:0031503,GO:0031974,GO:0031981,GO:0033036,GO:0033750,GO:0034097,GO:0034613,GO:0042221,GO:0042254,GO:0042273,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045931,GO:0046907,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071345,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0090068,GO:1900087,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:1990823,GO:1990830,GO:2000045
EggNOG free text desc.ribosomal large subunit export from nucleus
EggNOG OGsKOG2229@1,KOG2229@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons14
Model size2720
Cds size1473
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1062.569.1prot_P-lacustris_contig1062.569.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1062 12836..18626 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815333.2051034-UTR-P-lacustris_contig1062:12817..128351622815333.2051034-UTR-P-lacustris_contig1062:12817..12835Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 12818..12835 +
1693493482.604162-UTR-P-lacustris_contig1062:12817..128351693493482.604162-UTR-P-lacustris_contig1062:12817..12835Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 12818..12835 +
1622815333.3428974-UTR-P-lacustris_contig1062:18626..186771622815333.3428974-UTR-P-lacustris_contig1062:18626..18677Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 18627..18677 +
1693493482.71329-UTR-P-lacustris_contig1062:18626..186771693493482.71329-UTR-P-lacustris_contig1062:18626..18677Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 18627..18677 +
1622815333.355294-UTR-P-lacustris_contig1062:18984..191351622815333.355294-UTR-P-lacustris_contig1062:18984..19135Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 18985..19135 +
1693493482.723956-UTR-P-lacustris_contig1062:18984..191351693493482.723956-UTR-P-lacustris_contig1062:18984..19135Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 18985..19135 +
1622815333.3653479-UTR-P-lacustris_contig1062:20719..208701622815333.3653479-UTR-P-lacustris_contig1062:20719..20870Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 20720..20870 +
1693493482.732907-UTR-P-lacustris_contig1062:20719..208701693493482.732907-UTR-P-lacustris_contig1062:20719..20870Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 20720..20870 +
1622815333.3758311-UTR-P-lacustris_contig1062:21132..213341622815333.3758311-UTR-P-lacustris_contig1062:21132..21334Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 21133..21334 +
1693493482.7443457-UTR-P-lacustris_contig1062:21132..213341693493482.7443457-UTR-P-lacustris_contig1062:21132..21334Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 21133..21334 +
1622815333.3867078-UTR-P-lacustris_contig1062:21375..220491622815333.3867078-UTR-P-lacustris_contig1062:21375..22049Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 21376..22049 +
1693493482.7526553-UTR-P-lacustris_contig1062:21375..220491693493482.7526553-UTR-P-lacustris_contig1062:21375..22049Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 21376..22049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815333.217581-CDS-P-lacustris_contig1062:12835..128981622815333.217581-CDS-P-lacustris_contig1062:12835..12898Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 12836..12898 +
1693493482.6140146-CDS-P-lacustris_contig1062:12835..128981693493482.6140146-CDS-P-lacustris_contig1062:12835..12898Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 12836..12898 +
1622815333.2318077-CDS-P-lacustris_contig1062:13612..137261622815333.2318077-CDS-P-lacustris_contig1062:13612..13726Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 13613..13726 +
1693493482.6221018-CDS-P-lacustris_contig1062:13612..137261693493482.6221018-CDS-P-lacustris_contig1062:13612..13726Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 13613..13726 +
1622815333.245927-CDS-P-lacustris_contig1062:14138..142881622815333.245927-CDS-P-lacustris_contig1062:14138..14288Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 14139..14288 +
1693493482.630485-CDS-P-lacustris_contig1062:14138..142881693493482.630485-CDS-P-lacustris_contig1062:14138..14288Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 14139..14288 +
1622815333.2601414-CDS-P-lacustris_contig1062:14617..148241622815333.2601414-CDS-P-lacustris_contig1062:14617..14824Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 14618..14824 +
1693493482.639845-CDS-P-lacustris_contig1062:14617..148241693493482.639845-CDS-P-lacustris_contig1062:14617..14824Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 14618..14824 +
1622815333.2700572-CDS-P-lacustris_contig1062:15481..156521622815333.2700572-CDS-P-lacustris_contig1062:15481..15652Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 15482..15652 +
1693493482.6512783-CDS-P-lacustris_contig1062:15481..156521693493482.6512783-CDS-P-lacustris_contig1062:15481..15652Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 15482..15652 +
1622815333.280992-CDS-P-lacustris_contig1062:16608..167581622815333.280992-CDS-P-lacustris_contig1062:16608..16758Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 16609..16758 +
1693493482.6592278-CDS-P-lacustris_contig1062:16608..167581693493482.6592278-CDS-P-lacustris_contig1062:16608..16758Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 16609..16758 +
1622815333.2909768-CDS-P-lacustris_contig1062:16998..171441622815333.2909768-CDS-P-lacustris_contig1062:16998..17144Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 16999..17144 +
1693493482.6709132-CDS-P-lacustris_contig1062:16998..171441693493482.6709132-CDS-P-lacustris_contig1062:16998..17144Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 16999..17144 +
1622815333.3032997-CDS-P-lacustris_contig1062:17772..179271622815333.3032997-CDS-P-lacustris_contig1062:17772..17927Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 17773..17927 +
1693493482.6794882-CDS-P-lacustris_contig1062:17772..179271693493482.6794882-CDS-P-lacustris_contig1062:17772..17927Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 17773..17927 +
1622815333.3150513-CDS-P-lacustris_contig1062:17984..182551622815333.3150513-CDS-P-lacustris_contig1062:17984..18255Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 17985..18255 +
1693493482.692621-CDS-P-lacustris_contig1062:17984..182551693493482.692621-CDS-P-lacustris_contig1062:17984..18255Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 17985..18255 +
1622815333.3248856-CDS-P-lacustris_contig1062:18580..186261622815333.3248856-CDS-P-lacustris_contig1062:18580..18626Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 18581..18626 +
1693493482.702903-CDS-P-lacustris_contig1062:18580..186261693493482.702903-CDS-P-lacustris_contig1062:18580..18626Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 18581..18626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1062.569.1

>prot_P-lacustris_contig1062.569.1 ID=prot_P-lacustris_contig1062.569.1|Name=mRNA_P-lacustris_contig1062.569.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=491bp
MLYDHIVNDIKSINEKGSNPKLNKSIQNLVFTMLKDDSEIAAKKSLDIMV
VLYRKRVWVDARTVNVIASALLADTPKLACTALNFFLNIDTIMADDDDDE
GKAENALGQVNLHAHSKKTAKRARDVHKQVKVNKKKNKAALSDESSGGLF
PAINLLHDPQGTVEKVFRRLRQSKQRFEVKLLMMNFISRAVGAHRLLLLP
FYSHLQRYVASQQREVTHILAYLVQACHDLVPPDEVMPVIKAVAYNFVTE
RCPGEVMALGINSIREVARRIPALLEEEGMDVLVLDLAAYSKHVDKSVVV
AARGFINFVRETYPSLLKSRDRGREHDISARPAKYGASSVAEGVDGADLL
TLHEQGLMPLDDDTDNVDGDEGDDQEAPQLVTLAEVGSGDEEEMWEEVEE
EEVEEEEEEEGSRPSKRARVPDKGTAESREENMNEMEVGLEEGKRKGGVK
FASEVKRSDGPGPNVGPSPRARQRRRIKSRCPSVWTARGS*
back to top

mRNA from alignment at P-lacustris_contig1062:12818..22049+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1062.569.1 ID=mRNA_P-lacustris_contig1062.569.1|Name=mRNA_P-lacustris_contig1062.569.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=9232bp|location=Sequence derived from alignment at P-lacustris_contig1062:12818..22049+ (Pleurocladia lacustris SAG_25_93)
GACAAAGCGTTGCGTGTGATGCTGTACGATCACATCGTGAACGATATCAA
GTCTATCAACGAGAAGGGTAGCAACCCTAAGGTGCGTGTATGCGTGTGGG
TGTGCGTATGTGTCTTCAGGCAGCATCGACGACGCTAACCGGCTGACCAA
TGACAAGATGACGTCACGGTCTCGCGAAAACGCGCATCGTCCGCGGCATG
TGCGTGCTCATGCTCGTGTGCCTGCGTCTGGGTGTGTTTCTTTTCTTTAC
GATTTGCGCCGGCTGCACCGCAAACCGGCTGTACAGTACCAGTGGTAAGA
AGAGGCGTCCGGGTCCGCGCTTCGAAGCGGAAAGGTCCGCGTGCCAATGG
TCGCACGTCGCGTTTCGTTTGTTGAGTTGGCTCTGCAGTTTGTTCGATTC
GGACGTCTCCTGTTGATCTTGTCAAATAGGCTTGTCGATTGACTCTGTCC
GTTAGGCTCTGTCAACTCGGCTTCTCAAAGGAGGCTTGTCACGTACACGT
GTCGATCGTATGATATGTACACGAGCAGGCGCACCGCGCCGCGCCGTGAC
TTAGCAGAGTCAGTACTAGCGCTACGTTTCCGCTTGCTTGTCTTATGTTG
TGTTATGTAGCCGGCTCACCTTCTTAGAGGTTGATTGGTGCACATGCAAG
CAAGGTGTCCACTAGTACAAAACAGCACAACTAAGAGAGTACGCGTGACC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCATTCTCCTCAC
TCCTTACGTTGTCCATTTGTGTGAAACGAAATAAAACAAAAATAGCTCAA
CAAATCGATCCAGAACCTCGTGTTCACGATGCTGAAGGACGACAGCGAGA
TCGCCGCCAAGAAGTCTCTGGACATAATGGTGGTTCTCTACCGCAAGAGG
GTCTGGGTGGTGAGAGAGAGAAAAAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGGCGGGGGGAGGGTCGGATGGGGGTCAGGAGGAAGGGAGCGAGAG
AGGGGTCTAGGATGGGGTTAGGAGAAGGAGAGTAGAGGCTGAAGTTTGTA
GTGCTTCGAAGTGCAAAGCAGTTACGATAAAGACAAGCAGCGAGGGCGTG
ACGCCCGTTCGAGTGCAACAACAGATGCTGAAACTCTCAGCTTCTCGTCG
GCTGTTTTTCCACCCCCACCCAACCCACCCTTCCCGTCCTTGCACTTCGC
GCTCCTATTGTGTGTGTATTTGATGGCAACCTTAACGTTTTCGTTTTTAT
CTGATGCCATCGTTCGGCGGCACACGCGACCGCCCGGTCGTATCTCGGGA
AAAAACAAACAAACGAAACAGGACGCGCGGACGGTCAACGTGATCGCGTC
GGCCCTGCTGGCTGACACGCCCAAGCTGGCCTGCACCGCCCTGAACTTCT
TCCTCAACATTGACACCATCATGGCAGACGACGACGACGACGAGGGCAAG
GCGGAGAATGCCCTTGGCCAGGTGCTTTTTTGATCGCGGGCTAGGTTTAG
GTTCTATTTTCTGTGCCGCCGCCAAGAGCTGTCAATCATGCAAGCACGGC
TAAAGCAAGCAACGGACGGTGTACACAGCAGTAAAGCTCTCTCGTACCAC
GAGCATGCATGTCTGCATACCCTAAAAGTTTGGGTAGCCCATATATGCCA
TATGCCCTATGCCCTATGCCCCCTCGCCTACTTCCCCTTGTCGGAATCGC
GCCTTGTCTTTTCTGTCCGTCCATCCTAACAACAACCCGTCGTCCATCGA
AACCGGCACGTGCCCTCTTCTTCCAAAAACTCGAAACAAAACTTCCACAG
GTCAACTTACACGCGCACTCAAAGAAGACGGCGAAGCGGGCGCGCGACGT
TCACAAGCAGGTGAAGGTCAACAAGAAGAAGAACAAGGCCGCTCTCTCGG
ACGAGTCCAGCGGCGGCCTTTTCCCTGCGATCAATCTGTTGCACGACCCG
CAGGGAACGGTGGAGAAGGTCTTCCGGCGCCTCCGGCAGTCCAAGCAGCG
CTTTGAGGTACGGCGGTCTTTGTTTATTGACTGCGAGTCGGGCTATTCTT
GCTGCAGAACAGAGCAGAATTATTATTGAACCGCCACTATTTGTCGAGAG
GGAGAGAGAGAGGGAGAGACCGTCTCGGTGTACGTTTCCATGTACAGTAC
CGATGTCGGGTTACGGTATGCCTAGGACTGCCTGTTTCGTTTCCTTTCAT
GTCTTCTTTCTTGTCGAATGTCGGGAAATGTGACATGTTTCTCCCTGAGG
GCAACATTTTGTGGACTCCTTCTCGTGAGTGTTCCTTTTCCGTGCTGTGT
CTTTTTTTTTTTTTGCCTTCCATTCTGTCGACGTGTGGGCGGTGTTGCGT
GGTGTGAGATGTCCTGGAGCGGGAAGGGGAGCGGGAAACCTCCTCCTTCG
CGCAATCCCAAACCGGCTCTTGGAGACGCGATCCGTGCCTCTGTTGTTTT
TGCATGAGACAGATGTGTTTTTTGGGGGCGGGGTCTTGTGTGTGCGTGTG
TGTGCCTACCTACTTCTGCGATTGTTCCGTCGTGGAAGGGATGAGAGATC
TCATGGTTCTCTGACCAAGTTTGGAGAAGAGTAGGTGAGGCGAAGAGGCC
TTCCCTCCACCCAACCCCCAACCCCGCTACCTCACTTCCCCGCGCGCTGC
CCTGTCCACGGCAGGTGAAGCTTCTCATGATGAACTTCATCTCGAGGGCA
GTGGGGGCACACCGCTTGCTTCTCCTGCCGTTTTACAGTCACCTCCAGCG
GTACGTGGCCTCGCAGCAGCGAGAGGTGACGCACATCCTGGCCTACCTGG
TGCAGGCTTGCCACGACCTGGTGCCGCCCGACGAGGTGAGGTGTTATTTT
TGTTATTATTGTTATTATTGTTATTATTGTTATTATTGTTAATATTGTTA
TTGTTGGTGGTGGTCGGTGCGTTGATGAGTGAAAGTTGTGCTATTGTATG
TGTTTTGTTTCGACTCGAGACGTTTTTTCGAGGAATGGAGCGTTGGCGAG
AATTGTCGAACTCGGAAGTATTTTGTGTGACACAGCAGTTGGGTTCAGCC
TTCATCGTGCGCTAGTCTTGCAGCCGTTCCGATCGATTTAGTGACAGGCT
TGGCATGACATGTTCCACAGCACGTTCACGGACCTACACTTCTCTCATGT
GGATGGATGTTTTGATTGTCCTCTCCTCCTGCGTGAAGAGGTGAGCTACA
GACCGCATTCAACAGATTTTTCTTTTTCTCATGAGACTGAACACAAAAAA
ACGCCGTGACGCAACGGGATCAAAACTAACCGAGTTGGCTTTCTTAGCCA
GCATTGATGTCGATGGACGCACTCGACGGTCGACACCCCGACACGAAGCT
TCATGGACCTGGGTGGTCGCCCCGCCCCGTAGCTCAGTTGGTGAACCGCG
CGCCTTCTGACGGCTAGGTCGTGGGTTCGAATCCTCGGTTAAGTCACACG
ATCTGGGGATTTTTCCCACAACGCACCTAGCAGTGCAGAGCGACTAGCGT
CGTGGGTGCACAAAATAAATTCGACTTCACGGTCGACGAGGGAAGGGACG
GCTGAACCCTTCCCGCGATAAGAAAAACAAATTCAGGCAAAAAAGTACCG
CAAAAGAAAAGAAAAAGAAGGTGGAGAAAAATAAAAACAAAACTCCTGTC
TGTGTGGCCCCGGGTGGTACATTCACGTCTGATGTGTCCAGTTCTGAGTA
TTTGGGATGACAACACACACATCCATTTAGGTTGTAGCGTTGCGTTTTTT
TTTCAACTTGGCGGTTGGCGTTCGACCTGCATGTACGACAGGTGATGCCG
GTGATCAAGGCCGTGGCTTACAACTTCGTGACCGAGCGCTGTCCCGGGGA
GGTGATGGCGTTGGGTATCAACTCCATTCGCGAGGTGGCGAGGAGGATAC
CGGCCCTTCTGGAGGAGGAAGGGATGGACGTGCTGGTGCTGGTGAGAATG
ATCATCAATTTGGTGTAGCTGCTGCTAGTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTTTGGTGGTGACGGTGGTGCTGACGCTTGTGTGCTGTGT
TTTGGCGGTTTTCACGATAAAATAATGATACCGAAGTGAAGGACTGAAAA
CGCAACTAACGAAGCAAAACAAGACATCAACACCCACGACTCCAGGGAAA
ACCGTCTTCCCCTCCACCTCCCAAACACCAGGACTTGGCCGCGTACAGCA
AGCACGTCGACAAGAGCGTGGTCGTGGCCGCAAGAGGCTTCATCAACTTC
GTCCGCGAGACGTACCCGAGCCTGCTTAAGTCCAGAGACCGCGGGAGGGA
GCACGACATATCCGCCAGGCCCGCCAAGTAGGAGACAAGAGGTTCATGTG
GAATACAGGCACACCCTCGCCCCCTGAACCGCTCCTACCCTTTAAAAGAG
CATCAAACACTGCGATATGACCGTGATTGAAGAGGGCGACTGGACCCGCA
TTGAAGTTGTTGTTTGTGTGTGTGTGTGTGTGTTCGTGTCTCGTTTTGCT
TCGGGAGTGAGGTAAGGAGGGCCGTTGGATGCAGAAGTTGGATCTCAACG
GACTCTCGCCTCTCGCAACCCCCGCCCCCTCCTTGCAGGCGCACCTTCCG
CTCGTTGCAAGGGACGGTTTGGTTGGTGGCCTTCGATTCTTATTCTTTCA
TCGTCCACATCCGTCATTCAGTCATTCAGTCATTCACCATCATCAACCTC
TTCGCTGGATGATCCATCGAACGCGCGTGTCTAGAACCGAACCAACATAT
CCCATATCACCGGCATTTTTGTTGAAGATCCCGTTCTCGTATATTACACC
ACCGCGATGACATCAGTCATGAACCATTCATCAGGGTACGGGCTCGTTTC
GGTCGATTCCGCTCCTCGCTGATCGCTGATCGATGCCTTCTCTCTCCTGT
CGTGGGATGTTGCTCCCCGACCATGTCATTCATCGATCATCGATGGTCGA
TCAAGGTACGGGGCTAGCTCGGTGGCTGAGGGCGTGGACGGGGCGGACCT
GCTCACCCTTCACGAGCAAGGCCTCATGCCTCTCGACGACGACACGGACA
ACGTCGACGGGGACGAAGGGGACGATCAGGAGGCGCCGCAACTGGTAACG
CTGGCCGAAGGTGACAAGATGGAGGAGGAGGGAGCAGGGGGGGAGGAGGA
TGATGGAGGAGAAGAAGTCGGAAGTGGAGACGAAGAAGAAATGTGGGAGG
AAGTGGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGGCAGTAGG
CCGAGCAAGCGGGCAAGGGTGCCCGACAAGGGGACGGCGGAAAGCAGGGA
GGAAAACATGAATGAAATGGAGGTAGGATTGGAGGAGGGGAAGAGGAAGG
GGGGCGTCAAGTTCGCCAGCGAAGTCAAGCGATCGGACGGCCCCGGCCCG
AACGTGGGGCCGTCGCCCCGGGCCCGACAACGAAGAAGGTGATTCCTCTC
TTTGAGAACACTCAATGAGAACCAGGAGAAGACGGAGATGACGGAGATGA
CAAGCCTGTCTTCTCGTTCATTTCTTTTGTTTTGTCCTCGTGTTTTGTCC
TCGAACGATCGATCGATGCTAGTGTGTTCGCAACGACCATCCTCTCACCG
ACTTATTATGCTGCTTCGCCCGACCCGCCGCCGCTTCGCTTGGTATGTCT
TTCCTGCTGCCCTACCTTTCGCGATATTCCTCCCATCTCCCGTCCCGCTT
GCCACGTCCCGTGCCGCCGAATCCGCTGTCTCTGACCATTGTGTTTCGCC
CGTGGCACGACAGAATCAAGTCCCGTTGCCCCTCCGTGTGGACAGCACGA
GGGTCTTGAGCGCCGAGGACTTCGAGAAGATAAAGAGGCTCAAGCAGCAG
GCCGCCGCGGGTGAGCAGCAACCGCGGCTTTTTTTGTTCTGGTTTTGCGG
CAAGCTCTCTTGGATTTCGGTTTGTTTGCTGTTGTGGTGTGCGTACCGAG
GGTCGGCTCTAATCTTGTCCACACGCTTTCTAACGGTACGTTCCACAACA
TGATGCTTTCTGTTGATGTGGGACAGCCTTGCGCGTCTCCTGACGTTCGT
AGTACGATTCTGCGCCACCGTCCCCAAGACCCAACCACACAGGTGCCCCT
TTTCCACTATGCACCCTGTTGCTCTCGCGTGCCTGGCATGACATATGACA
TGTACACCTGAAAACAGCCGCGAAGCGGGGAATGCACAAGCGCAAGCACA
ACATCGGCGGCAGCGACTCGGAAGACAGCGACGACGGGGGCGGGGAGAAG
AGCTTTGCCGTCGACCCGAGCGCGCTCGAGGGTTACCGGAAACGCAGGCG
CGCGACGCTCGAGGAGAGGTGAGTGATTGAAAGCATCTCAGAACGGAACT
AACAGGCTGGCGGGGCAAGGGAGGAACTTTGAAGGAACAGAGCAAGGGGA
GAGAAAAAAATGTACGAGAGGGAGGGAGGGGTACGCTTTCCTTGGTTCTG
TCCGCCAGAGGGGTCTTTTTCCTTTGTTGGGAAATGAAGAAATGAAGATG
GAGTATGGTTTTTGTGGAGAAGCGCATTGTTTTGTCATGGGGTGTCTTGG
TACAGTACTGCTGCTTGAACGGCGTGACGCGACACCCTCAAGATATGTCC
AGACGGCTCGAGGCAACGGAGAGGTCTTTGATCCCATCCTGATGATCAAC
CGTGCTGCTTTCTTGAAGGGTGGCATGTGCGCCGCGCGAGAAGTTTCAAA
AATATCGTGCTGCTCTGTCAGCCGCACCAATGTGCGGCGTGATGTTTACG
ATCTTGGTGTGTCCATTGCTGTTTTTTGTTACAGCGCTGCTGCTGCTGCT
GCTGTCGGCGTTCGTGTTAGGCCGTTTCTTATAGACACGGATTCTTGAAA
CGGAAAAGTTCGACAGTCTCGGGGCACATTGTCATTGGTCAGCCGGTTAG
CGCGGTCGACCCATACTACTGAAACACACACACACACACACACACACACA
CACACGTACGTCTAACTCCCGGCAGTGCGTGCTTTAGCGCCAGCCCTTGT
ATGCCTGCTGGGCGTCACCTGTGGCCTAGGCAACGCAATTGTTCTGACCG
CGGGTTGCGTGGTTCATCAACAAAAAAAACAAAACGGACTCTGCATCACC
ACCGAGCTATCGCTACACACAATACCCATGCCCCCCACAACTTGCCACAC
CCACAGATATCACGATGGATCACACGCTCGAAGTAGTTTGGTTGCGATCG
GTGCACCAGAGGCCGAGAACCGGGTGACCGTGTGCTGTTTGTGTTGCTGT
CGCTGCCCACAGGCCATAGGCGCTGTGTCAAAAAAAACTAAACGGATTAC
TTCTGCATCACCACCAAGCTCTCGCCACACACAATACCCATGCCCCCCAC
AACTGCCGCACCCACAGATATCATAATGGATCACACTCTCGAGTAGTTTG
GTTGCGATCGGTGCACCAGAGGCCGAAAACCGGGTGACGGTGTGTGCTGT
TTGTGTTGCTGTTGCTGCCCAACAGGCCACAGGCGCTGTGTCGAAAAATA
CTAAACGGATTACTTCTGCATCACCACCAAGCTCTCGCCACACACAATAC
CCATGCCCTCCACAACTGCCACACCCACAGATATCACGATGAATAACACG
CTCGAAGTAGTTTGGTTGCGATCGGCGACCCAGGGGCCGAGAACCGGGTG
ACGGTGTGTGCTGTTTGTGCTGCTCGAAGCTGACGTCGGGCCAATGGCAC
CTAAAAATAAATCTGACTTGAAAATTCGATTGCTATAAGACGGCAGCTTG
TCCGCCCAGGCGAAAGAAAACTGAAAACGGATTTTGCCCTTTTTCGTTTC
AAGAATCCGTCTCTATAAGAAACCGTCATACATGTTTTTTTTCATGATTT
TGTTTTTTCCTCATGTATCTTTTGTTTTTTCTACGGAACTCTTTCCTCAT
AGGCTGGAAGGCGTCATCCGGGGCAGGGAGAAGTTCCAGTCAAACACACA
CGGCGGAGGGTTGACCAACTCAGAAAAGGAGCGCAAGAAAAACTTTCTCA
TGGTCCGAAAGGGACGAGCGGTCAAGCACAAGACCAAGATGGGCGCGAAG
CAGGTGGGTGGCAATCGCAGAGAGGGGTGACAATGAAAATGGTTGGGGGA
GGGGGGGTCAAGTATCCTACGAGAGGGAAAGTGAAGCTACGAAAATGAGC
TACAGAAAAGGGCGGTTACCTAAATGAAATGAGAGAGAGAGCGAAAGCGC
GACGGGAGAGAGATCTCCAACGTTTATCCTTGGTTGTTCCACTCTCCGCT
CCCCTCAAAACACACCCTGGCCCGGAATCCATCCCCGACCCCCGTTTCCA
ATCTCGATTCCGCAGGTGATGGCCATGAAGAACAGGGGAGGCAAGGTCCA
GATGAAGCGCGACAAGCGAAAGAAGAGGCGGACGTGATCGATTGATTTCT
GTCTCGTCCTCGTCCTCGTCCTGGCTCTCGCTTGTGTGGTTCTCGCCATT
CTGGGTCCTTTCCACTCCCAACTTTTGCATTCGTCGTGCTCTGTTTGTGA
TTGAGGGACGCTACATGGCGAGGTTGTCGGCTTGTGTCAACGCTGAAGTC
GATTCAAGAGGGTCAAGCCCCCCCCGTCCTCATCGGCATGATGTATCATG
TCGCGGCCTGAAAGGTGAAGCCGGTCTGCCGCTGTTCTTTCCGCGGCGCG
TGCTTTTCGCCCTTGTTGTTTTCGTTTTGTTTTCGTTTTGTGTGTGCCTG
TCTGCTGTGCGTGCCTTGAGGCGATCGCTGGAAAGGTTTTTGGTTCGGCA
ATAGCAATGACGATTTCAATGGTTCTGTTGCCAACAGAGCGAGGCGCCCG
TCACACGGACGGCTTGGCATTGTGTAGCAGCCAAGAGCCAACCGGATATT
GTTCGTTCTTGCGGGGGGTAGGGGAGGGAGGGGAGTAGCAACGACGCGGA
ATGGGTCTTGGGACGTGCGTGGCGAACCTGGTTCGGTGGCGCACCATGTA
TTCGCGAGGGAGAATGTTGGCGTACGACATGATTTGATTTTATGTCAAAT
TTTGTAACGAGAGCGTCCTACTTTATTTCTATGCGTCCTGCTGTGAACTT
GTATGGCAGATGTTTTTCGTCCGTCATGCGCTTGCTTGTGTGTTGTATTT
GAATGTTGCCCCAGCGCACGCTGGAGAACGACAGACCGCCGTGGCGATGT
GCTTGCGGGAATGTGCGATCCATACGAACTACTTTTAGACCAAGAGTTCG
TTGTATTCGAAGCGTGTACAAAGGTCAAATCT
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1062:12818..22049+

>mRNA_P-lacustris_contig1062.569.1 ID=mRNA_P-lacustris_contig1062.569.1|Name=mRNA_P-lacustris_contig1062.569.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2946bp|location=Sequence derived from alignment at P-lacustris_contig1062:12818..22049+ (Pleurocladia lacustris SAG_25_93)
ATGCTGTACGATCACATCGTGAACGATATCAAGTCTATCAACGAGAAGGG
TAGCAACCCTAAGATGCTGTACGATCACATCGTGAACGATATCAAGTCTA
TCAACGAGAAGGGTAGCAACCCTAAGCTCAACAAATCGATCCAGAACCTC
GTGTTCACGATGCTGAAGGACGACAGCGAGATCGCCGCCAAGAAGTCTCT
GGACATAATGGTGGTTCTCTACCGCAAGAGGGTCTGGGTGCTCAACAAAT
CGATCCAGAACCTCGTGTTCACGATGCTGAAGGACGACAGCGAGATCGCC
GCCAAGAAGTCTCTGGACATAATGGTGGTTCTCTACCGCAAGAGGGTCTG
GGTGGACGCGCGGACGGTCAACGTGATCGCGTCGGCCCTGCTGGCTGACA
CGCCCAAGCTGGCCTGCACCGCCCTGAACTTCTTCCTCAACATTGACACC
ATCATGGCAGACGACGACGACGACGAGGGCAAGGCGGAGAATGCCCTTGG
CCAGGACGCGCGGACGGTCAACGTGATCGCGTCGGCCCTGCTGGCTGACA
CGCCCAAGCTGGCCTGCACCGCCCTGAACTTCTTCCTCAACATTGACACC
ATCATGGCAGACGACGACGACGACGAGGGCAAGGCGGAGAATGCCCTTGG
CCAGGTCAACTTACACGCGCACTCAAAGAAGACGGCGAAGCGGGCGCGCG
ACGTTCACAAGCAGGTGAAGGTCAACAAGAAGAAGAACAAGGCCGCTCTC
TCGGACGAGTCCAGCGGCGGCCTTTTCCCTGCGATCAATCTGTTGCACGA
CCCGCAGGGAACGGTGGAGAAGGTCTTCCGGCGCCTCCGGCAGTCCAAGC
AGCGCTTTGAGGTCAACTTACACGCGCACTCAAAGAAGACGGCGAAGCGG
GCGCGCGACGTTCACAAGCAGGTGAAGGTCAACAAGAAGAAGAACAAGGC
CGCTCTCTCGGACGAGTCCAGCGGCGGCCTTTTCCCTGCGATCAATCTGT
TGCACGACCCGCAGGGAACGGTGGAGAAGGTCTTCCGGCGCCTCCGGCAG
TCCAAGCAGCGCTTTGAGGTGAAGCTTCTCATGATGAACTTCATCTCGAG
GGCAGTGGGGGCACACCGCTTGCTTCTCCTGCCGTTTTACAGTCACCTCC
AGCGGTACGTGGCCTCGCAGCAGCGAGAGGTGACGCACATCCTGGCCTAC
CTGGTGCAGGCTTGCCACGACCTGGTGCCGCCCGACGAGGTGAAGCTTCT
CATGATGAACTTCATCTCGAGGGCAGTGGGGGCACACCGCTTGCTTCTCC
TGCCGTTTTACAGTCACCTCCAGCGGTACGTGGCCTCGCAGCAGCGAGAG
GTGACGCACATCCTGGCCTACCTGGTGCAGGCTTGCCACGACCTGGTGCC
GCCCGACGAGGTGATGCCGGTGATCAAGGCCGTGGCTTACAACTTCGTGA
CCGAGCGCTGTCCCGGGGAGGTGATGGCGTTGGGTATCAACTCCATTCGC
GAGGTGGCGAGGAGGATACCGGCCCTTCTGGAGGAGGAAGGGATGGACGT
GCTGGTGCTGGTGATGCCGGTGATCAAGGCCGTGGCTTACAACTTCGTGA
CCGAGCGCTGTCCCGGGGAGGTGATGGCGTTGGGTATCAACTCCATTCGC
GAGGTGGCGAGGAGGATACCGGCCCTTCTGGAGGAGGAAGGGATGGACGT
GCTGGTGCTGGACTTGGCCGCGTACAGCAAGCACGTCGACAAGAGCGTGG
TCGTGGCCGCAAGAGGCTTCATCAACTTCGTCCGCGAGACGTACCCGAGC
CTGCTTAAGTCCAGAGACCGCGGGAGGGAGCACGACATATCCGCCAGGCC
CGCCAAGACTTGGCCGCGTACAGCAAGCACGTCGACAAGAGCGTGGTCGT
GGCCGCAAGAGGCTTCATCAACTTCGTCCGCGAGACGTACCCGAGCCTGC
TTAAGTCCAGAGACCGCGGGAGGGAGCACGACATATCCGCCAGGCCCGCC
AAGTACGGGGCTAGCTCGGTGGCTGAGGGCGTGGACGGGGCGGACCTGCT
CACCCTTCACGAGCAAGGCCTCATGCCTCTCGACGACGACACGGACAACG
TCGACGGGGACGAAGGGGACGATCAGGAGGCGCCGCAACTGGTAACGCTG
GCCGAAGGTACGGGGCTAGCTCGGTGGCTGAGGGCGTGGACGGGGCGGAC
CTGCTCACCCTTCACGAGCAAGGCCTCATGCCTCTCGACGACGACACGGA
CAACGTCGACGGGGACGAAGGGGACGATCAGGAGGCGCCGCAACTGGTAA
CGCTGGCCGAAGTCGGAAGTGGAGACGAAGAAGAAATGTGGGAGGAAGTG
GAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGGCAGTAGGCCGAG
CAAGCGGGCAAGGGTGCCCGACAAGGGGACGGCGGAAAGCAGGGAGGAAA
ACATGAATGAAATGGAGGTAGGATTGGAGGAGGGGAAGAGGAAGGGGGGC
GTCAAGTTCGCCAGCGAAGTCAAGCGATCGGACGGCCCCGGCCCGAACGT
GGGGCCGTCGCCCCGGGCCCGACAACGAAGAAGTCGGAAGTGGAGACGAA
GAAGAAATGTGGGAGGAAGTGGAGGAGGAGGAGGTGGAGGAGGAGGAGGA
GGAGGAGGGCAGTAGGCCGAGCAAGCGGGCAAGGGTGCCCGACAAGGGGA
CGGCGGAAAGCAGGGAGGAAAACATGAATGAAATGGAGGTAGGATTGGAG
GAGGGGAAGAGGAAGGGGGGCGTCAAGTTCGCCAGCGAAGTCAAGCGATC
GGACGGCCCCGGCCCGAACGTGGGGCCGTCGCCCCGGGCCCGACAACGAA
GAAGAATCAAGTCCCGTTGCCCCTCCGTGTGGACAGCACGAGGGTCTTGA
AATCAAGTCCCGTTGCCCCTCCGTGTGGACAGCACGAGGGTCTTGA
back to top