mRNA_P-lacustris_contig1062.567.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1062.567.1
Unique NamemRNA_P-lacustris_contig1062.567.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1062.567.1 vs. uniprot
Match: D8LFB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFB7_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 4.640e-82
Identity = 136/191 (71.20%), Postives = 152/191 (79.58%), Query Frame = 1
Query:    1 NESLDDLFCEIWERESQPELRFPVRGVGSVVQTQDLHGHRWEVNNFSNTVWEAAIWMHHFFQDERCFPAEWLRGRRVLEIGAGAGLVGLTLALLGAEVTMTDLPEALPILRHNTEITFGTLSD--GDGNSHSSSHG---RESHGRAAGKP-CRRPAIRKLCWGNAAEAAEVXXXXXXXXXVEENCSAWEGM 555
            ++SLDDLF EIWERESQPELRF + GVGSVVQTQDL GHRWEVNNFSNTVWEAAIWMHHFFQDERCFP  WLRGRRVLEIGAG GLVGLTLALLGA+VTMTDLPEALPILRHNT+ TF TL+D  GDG+ ++  +G   R++H  AA +  C RP I++LCWGNAAEA EV         V+   S WEG 
Sbjct:   18 SDSLDDLFSEIWERESQPELRFAIIGVGSVVQTQDLQGHRWEVNNFSNTVWEAAIWMHHFFQDERCFPPGWLRGRRVLEIGAGTGLVGLTLALLGAQVTMTDLPEALPILRHNTDATFATLNDDEGDGDHNNDRNGLLGRKNHDHAADRESCSRPTIQELCWGNAAEAGEVAAAAAA---VDGEGSEWEGF 205          
BLAST of mRNA_P-lacustris_contig1062.567.1 vs. uniprot
Match: A0A6H5KL88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL88_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 8.880e-80
Identity = 133/191 (69.63%), Postives = 146/191 (76.44%), Query Frame = 1
Query:    1 NESLDDLFCEIWERESQPELRFPVRGVGSVVQTQDLHGHRWEVNNFSNTVWEAAIWMHHFFQDERCFPAEWLRGRRVLEIGAGAGLVGLTLALLGAEVTMTDLPEALPILRHNTEITFGTLSDGDG-----NSHSSSHGRESHGRAAGK-PCRRPAIRKLCWGNAAEAAEVXXXXXXXXXVEENCSAWEGM 555
            ++SL DLF EIWERESQPELRF + GVGSVVQTQDL G RW+VNNFSNTVWEAAIWMHHFFQDERCFP  WLRGRRVLEIGAG GLVGLTLALLGA+VTMTDLPEALPILRHNT+ TF TL+D +G     N  +   GRE+H  AA +  C RP IR+LCWGN AEA EV         V+   S WEG 
Sbjct:   18 SDSLGDLFSEIWERESQPELRFAIIGVGSVVQTQDLQGQRWKVNNFSNTVWEAAIWMHHFFQDERCFPPGWLRGRRVLEIGAGTGLVGLTLALLGAQVTMTDLPEALPILRHNTDATFATLNDDEGHGDENNDRNGLVGRENHDHAADRMSCSRPMIRELCWGNVAEAGEVAAAAAA---VDGEGSEWEGF 205          
BLAST of mRNA_P-lacustris_contig1062.567.1 vs. uniprot
Match: A0A7S3YA45_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA45_HETAK)

HSP 1 Score: 122 bits (307), Expect = 1.940e-28
Identity = 70/156 (44.87%), Postives = 96/156 (61.54%), Query Frame = 1
Query:    4 ESLDDLFCEIWERESQPELRFPVRGVGSVVQTQDLHGHRWEVNNFSNTVWEAAIWMHHFFQDERCFPAEWLRGRRVLEIGAGAGLVGLTLALLGAEVTMTDLPEALPILRHNTEITFGTLSDGDGNSHSSSHGRESHGRAAGKPCRRPAIRKLCWG 471
            E + D F E+W RESQ EL FPV      V  QD++G  ++ +  +NTVWEA  +++ +FQ++  FP  +  G+ VLE+G+G G+VG+TLALLGAEVT+TDL EALPILR N E  FG          SS H  +S+   +G     P + +L WG
Sbjct:   38 EEVVDWFAELWPRESQRELVFPVDSFKLTV-LQDVNGETFKTS-LANTVWEAGWFLNRYFQEKSLFPPGYFVGKSVLELGSGTGVVGMTLALLGAEVTLTDLAEALPILRANVEFNFGEKGP-----RSSEHEGDSYAAPSGITV--PEVEELAWG 184          
BLAST of mRNA_P-lacustris_contig1062.567.1 vs. uniprot
Match: W7TVD0_9STRA (Nicotinamide N-methyltransferase, putative n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVD0_9STRA)

HSP 1 Score: 110 bits (275), Expect = 5.480e-24
Identity = 62/129 (48.06%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 NESLDDLFCEIWERESQPELRFPVR-GVGSVVQT---QDLHGHRWEVNNFSNTVWEAAIWMHHFFQDERCFPAEWLRGRRVLEIGAGAGLVGLTLALLGAEVTMTDLPEALPILRHNTEITFGTLSDGD 375
            NE   +L  E+W RE++P L + V    G  V     QDL G R+E+    N VW+AA+ MHHFFQ E  FP    +G RVLE+G+G GLVG+TL LLGA+V +TDLP  LP+LR+N   +  +LS  D
Sbjct:   23 NEEEGNLLEELWPRETKPLLNYQVSFSNGCTVNVPIVQDLMGRRYEMG-IGNIVWDAAVAMHHFFQKE--FPPGHFQGARVLELGSGTGLVGITLTLLGAQVVLTDLPVFLPLLRNNVTTSLSSLSASD 148          
BLAST of mRNA_P-lacustris_contig1062.567.1 vs. uniprot
Match: UPI001F5EBACC (protein N-lysine methyltransferase METTL21D-like n=2 Tax=Schistocerca TaxID=7008 RepID=UPI001F5EBACC)

HSP 1 Score: 81.6 bits (200), Expect = 3.230e-14
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  124 EVNNFSNTVWEAAIWMHHFFQDERCFPAEWLRGRRVLEIGAGAGLVGLTLALLGAEVTMTDLPEALPILRHNTEI 348
            EV N S  VW+AAI +  + + E      WL+G  V+E+GAG G VGLT + LGA VT+TDLPE +P++RHN ++
Sbjct:   33 EVGNVSCVVWDAAIVLAKYLEVENSRNKSWLKGSSVVELGAGLGCVGLTASCLGAHVTITDLPEIMPLMRHNIDV 107          
BLAST of mRNA_P-lacustris_contig1062.567.1 vs. uniprot
Match: UPI000771BD38 (protein-lysine methyltransferase METTL21D n=1 Tax=Cephus cinctus TaxID=211228 RepID=UPI000771BD38)

HSP 1 Score: 80.1 bits (196), Expect = 1.050e-13
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  124 EVNNFSNTVWEAAIWMHHFFQDERC----FPAEWLRGRRVLEIGAGAGLVGLTLALLGAEVTMTDLPEALPILRHNTE 345
            +V N S  VW+AA+ +  +  D  C    F +EWLRG+++LE+GAG G VG+T A LG EV MTDL EALPILR N E
Sbjct:   27 QVGNVSCIVWDAALVLAKYL-DISCQKNKFGSEWLRGKKILELGAGIGCVGMTAACLGGEVVMTDLQEALPILRKNIE 103          
BLAST of mRNA_P-lacustris_contig1062.567.1 vs. uniprot
Match: A0A6L2PB66_COPFO (Uncharacterized protein n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PB66_COPFO)

HSP 1 Score: 77.8 bits (190), Expect = 6.290e-13
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:  124 EVNNFSNTVWEAAIWMHHFFQDERCFPAEWLRGRRVLEIGAGAGLVGLTLALLGAEVTMTDLPEALPILRHNTEI 348
            EV + S  VW+AA+ +  F +       +WLRGR V+E+GAG G VGLT A  GA VTMTDLPE +P+L+ N ++
Sbjct:   25 EVGDVSCVVWDAALVLAKFLEVRCNNMQDWLRGRSVVELGAGIGCVGLTAACFGASVTMTDLPEVMPLLQKNIDV 99          
BLAST of mRNA_P-lacustris_contig1062.567.1 vs. uniprot
Match: A0A3B5MLT2_9TELE (EEF1A lysine methyltransferase 3-like n=1 Tax=Xiphophorus couchianus TaxID=32473 RepID=A0A3B5MLT2_9TELE)

HSP 1 Score: 75.9 bits (185), Expect = 2.470e-12
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  148 VWEAAIWMHHFFQDERCFPAEWLRGRRVLEIGAGAGLVGLTLALLGAEVTMTDLPEALPILRHNTEITFGTLSDGDGNSHSSSHGRESHGRAAGKPCRRPAIRKLCWG 471
            VWEAA+ +  +F+D    P+  LRGRRV+E+GAG G+VG+  A LGAEVT+TDLP ALP L+ N                            AG P   P +  LCWG
Sbjct:   36 VWEAALHLCRYFED----PSVELRGRRVIELGAGTGVVGILAARLGAEVTVTDLPLALPQLQANVSANV---------------------PPAGWPSAPPVVLPLCWG 118          
BLAST of mRNA_P-lacustris_contig1062.567.1 vs. uniprot
Match: A0A3B3VS11_9TELE (EEF1A lysine methyltransferase 3 n=2 Tax=Poecilia TaxID=8080 RepID=A0A3B3VS11_9TELE)

HSP 1 Score: 75.1 bits (183), Expect = 5.820e-12
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  148 VWEAAIWMHHFFQDERCFPAEWLRGRRVLEIGAGAGLVGLTLALLGAEVTMTDLPEALPILRHNTEITFGTLSDGDGNSHSSSHGRESHGRAAGKPCRRPAIRKLCWG 471
            VWEAA+ +  +F+D+       LRGRRV+E+GAG G+VG+  A LGAEVT+TDLP ALP LR N                            +G P   PA+  LCWG
Sbjct:   49 VWEAALHLCRYFEDQSVE----LRGRRVIELGAGTGVVGILAARLGAEVTVTDLPLALPQLRVNVSANV---------------------PPSGWPSAPPAVLPLCWG 131          
BLAST of mRNA_P-lacustris_contig1062.567.1 vs. uniprot
Match: A0A3Q2DU25_CYPVA (EEF1A lysine methyltransferase 3 n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=A0A3Q2DU25_CYPVA)

HSP 1 Score: 74.3 bits (181), Expect = 1.120e-11
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  148 VWEAAIWMHHFFQDERCFPAEWLRGRRVLEIGAGAGLVGLTLALLGAEVTMTDLPEALPILRHNTEITFGTLSDGDGNSHSSSHGRESHGRAAGKPCRRPAIRKLCWG 471
            VWEAA+ +  +F+D   +  E LRGRR++E+GAG GLVG+  A LGAEVT+TDLP  LP L+ N                           A G P   PA+  LCWG
Sbjct:   51 VWEAALHLCRYFED---YSVE-LRGRRIIELGAGNGLVGILAARLGAEVTLTDLPLVLPQLQENVSANV---------------------PADGWPSTPPAVLPLCWG 133          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1062.567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFB7_ECTSI4.640e-8271.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL88_9PHAE8.880e-8069.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YA45_HETAK1.940e-2844.87Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TVD0_9STRA5.480e-2448.06Nicotinamide N-methyltransferase, putative n=2 Tax... [more]
UPI001F5EBACC3.230e-1449.33protein N-lysine methyltransferase METTL21D-like n... [more]
UPI000771BD381.050e-1353.85protein-lysine methyltransferase METTL21D n=1 Tax=... [more]
A0A6L2PB66_COPFO6.290e-1349.33Uncharacterized protein n=1 Tax=Coptotermes formos... [more]
A0A3B5MLT2_9TELE2.470e-1241.67EEF1A lysine methyltransferase 3-like n=1 Tax=Xiph... [more]
A0A3B3VS11_9TELE5.820e-1241.67EEF1A lysine methyltransferase 3 n=2 Tax=Poecilia ... [more]
A0A3Q2DU25_CYPVA1.120e-1141.67EEF1A lysine methyltransferase 3 n=1 Tax=Cyprinodo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1062contigP-lacustris_contig1062:7301..10028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue2e-38
Seed eggNOG ortholog2880.D8LFB7
Preferred nameMETTL22
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0009987,GO:0016740,GO:0016741,GO:0019538,GO:0031072,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1176
Cds size393
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815333.0016582-UTR-P-lacustris_contig1062:7300..79101622815333.0016582-UTR-P-lacustris_contig1062:7300..7910Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 7301..7910 -
1693493482.4754834-UTR-P-lacustris_contig1062:7300..79101693493482.4754834-UTR-P-lacustris_contig1062:7300..7910Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 7301..7910 -
1622815333.0128677-UTR-P-lacustris_contig1062:8702..87071622815333.0128677-UTR-P-lacustris_contig1062:8702..8707Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 8703..8707 -
1693493482.4862356-UTR-P-lacustris_contig1062:8702..87071693493482.4862356-UTR-P-lacustris_contig1062:8702..8707Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 8703..8707 -
1622815333.0712032-UTR-P-lacustris_contig1062:9584..96651622815333.0712032-UTR-P-lacustris_contig1062:9584..9665Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 9585..9665 -
1693493482.519275-UTR-P-lacustris_contig1062:9584..96651693493482.519275-UTR-P-lacustris_contig1062:9584..9665Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 9585..9665 -
1622815333.0832527-UTR-P-lacustris_contig1062:9941..100281622815333.0832527-UTR-P-lacustris_contig1062:9941..10028Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 9942..10028 -
1693493482.53257-UTR-P-lacustris_contig1062:9941..100281693493482.53257-UTR-P-lacustris_contig1062:9941..10028Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1062 9942..10028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815333.0253146-CDS-P-lacustris_contig1062:8707..89771622815333.0253146-CDS-P-lacustris_contig1062:8707..8977Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 8708..8977 -
1693493482.4950025-CDS-P-lacustris_contig1062:8707..89771693493482.4950025-CDS-P-lacustris_contig1062:8707..8977Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 8708..8977 -
1622815333.0413375-CDS-P-lacustris_contig1062:9323..94281622815333.0413375-CDS-P-lacustris_contig1062:9323..9428Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 9324..9428 -
1693493482.5031736-CDS-P-lacustris_contig1062:9323..94281693493482.5031736-CDS-P-lacustris_contig1062:9323..9428Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 9324..9428 -
1622815333.058745-CDS-P-lacustris_contig1062:9566..95841622815333.058745-CDS-P-lacustris_contig1062:9566..9584Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 9567..9584 -
1693493482.5114563-CDS-P-lacustris_contig1062:9566..95841693493482.5114563-CDS-P-lacustris_contig1062:9566..9584Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1062 9567..9584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1062.567.1prot_P-lacustris_contig1062.567.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1062 8708..9584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1062.567.1

>prot_P-lacustris_contig1062.567.1 ID=prot_P-lacustris_contig1062.567.1|Name=mRNA_P-lacustris_contig1062.567.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=131bp
MHHFFQDERCFPAEWLRGRRVLEIGAGAGLVGLTLALLGAEVTMTDLPEA
LPILRHNTEITFGTLSDGDGNSHSSSHGRESHGRAAGKPCRRPAIRKLCW
GNAAEAAEVAAAAAAAAAVEENCSAWEGMT*
back to top

mRNA from alignment at P-lacustris_contig1062:7301..10028-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1062.567.1 ID=mRNA_P-lacustris_contig1062.567.1|Name=mRNA_P-lacustris_contig1062.567.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2728bp|location=Sequence derived from alignment at P-lacustris_contig1062:7301..10028- (Pleurocladia lacustris SAG_25_93)
AATGAGAGTCTAGATGATCTGTTCTGCGAGATTTGGGAACGGGAGAGCCA GCCAGAACTGAGATTCCCTGTTCGTGGCGTCGGATCGGTGAGACAATAAT AGAGTGGTCGGCTTTTGGCCTGCTACTGTTGTTGCTACGGGACCTGCTCC TGTATGGTGTGTCGTTGAAAAATGCAGGAAGATGATAGAGAATCGCGGGC ATTGCACAGTTGCTTTCTCCCTAAACATGCACAAAATAGCATTTAATCGC GTTGGTTTGGAGAGCGCCATCCACAACAACAGCAGCTGTTGATGTAAAAT TGTAGACTCGCAAACAAGCGCGTGGCACGTATGTACGTTGTGCCATCGCC CCAAAACCGGCAGGTGGTTCAGACGCAAGACCTCCACGGACACCGATGGG AGGTCAACAACTTCTCCAATACCGTATGGGAGGCGGCAATCTGGATGCAT CATTTCTTCCAGGTACAAAAGGTTCAGGCAGGACAGCATTTGTTGTGTGT GACCATGTGTCGTAAGGCGTACTACAGAGCAAGACGACGGGCGCTCCGAT CTTGTTGAAGGACTCGATTATTGGCTCCCTCGGTGAATGCTTTTGCGCAG GATGAACGCTGCTTCCCAGCCGAGTGGCTACGAGGCCGCCGCGTCCTGGA GATCGGTGCCGGCGCAGGGTTGGTTGGCCTCACCCTTGCACTCCTCGGTG CCGAGGTATGATGCCGAAGATGTCCCAGGCCAAGCAACGCTACCGTTCAA CGTATACCGCCCGTAGGCGTGTACATTGCTCCACAGCCGATAGAGCCAAA TTTACTGCATGACTGGTCAGGTCCAGGCCTCGTCGCAATCTCATCAAAAT GTTATGGTTGCGTACCGGACTCGCGCATGTTGGCAGGCATTCATTCTACA TGCACGCCAAGGGTTGATGGCGCATGCACGATTGGTTCACTGGGGGTATG CTATTCCGTGTCTCACACAAGTCTTGGGGATGTTTTATAGCATTTTTCTT TTCCCCCCGTGCCCCGCTGCTGCTCCTCCTCCGACGCTCGCTCCCGATCA GGTCACAATGACCGACCTACCCGAGGCACTGCCCATCCTTCGACACAACA CTGAAATCACCTTCGGAACCCTGAGCGACGGCGATGGCAACAGCCACAGC AGCAGTCATGGCAGAGAAAGTCATGGCCGCGCAGCCGGGAAGCCCTGTCG CAGACCGGCGATCCGGAAGCTTTGCTGGGGCAATGCGGCTGAAGCGGCAG AGGTGGCAGCAGCAGCGGCCGCGGCGGCGGCTGTGGAAGAAAATTGTTCG GCGTGGGAGGGTATGACTTGATCGTGGTGAGACGAGGAAAGCGAAGGTAA AACGAAAGTCACTTGTCCCGCGCGGTGTGTCGACGTGCTTGTGTAGTTTT GGACGTACGCGGCTTGATTAAAGGTGTCAAGAGGAAAGGCGAGCAATGCA CAACGGGTGCCGATCAAAAGGGGTTCATCGCGCGCTTGCTTCGACCTGAA AAACTATACAATGAGATCACCTCTGTCGGACTCCGACGATTGATCGCTGG CCTCGTTGATTTATTTGGCGATGGCCACTGGCGCGCAGATGTTTGCATTT ACTATTGTGCGATGCTTGCATGAATGCTGAGACGACTGATGTACAACTAC CTCCACCCAGGGCGCGGATGTGATTTATAACGAGCGGACCTTTCCAGCGC TGCTTTCCACTCTCTCAGACCGGCGCCTATGCTCGGAGAAAACCCTGGTC TACCTCGCCACGATGCTGGTGCGCTGTTTTGTAATGCCATTCTTGCAGGC CGGTGAAGGTTGGTAGATGTCGCGATGATTCGGAGCACTGGATGTTTGTT GTTCTGTGTCGTACGAAAAATGGTGGAGAGGAATCGAGTGAGATCCCCTT TGCCGCTTGTCTTCCTCGACGACTTTGCCCTTCTTGATCGAGGCACACGC CAGCCAGCCAGCGTGTTTCGTGTCACATACATATAAACGCCCATGTCGAT GTGTTGGCGTCTTCTATTGTTCGTGCGTTTCGACGGCAACCAATGGCCGT CTCCCTTTTCGTCTCTTGACCGAGATGGGTTGTTCGCTCGCATGTGCCCC TCGTGTGGTGTCGAACAGCGAGGAGGGCGGCACGAGGGCCTCTTGGAGAT GCTCAACCATAACGGCTTCCACGTTCGCGCCTTGGACCCGACCTGCGCCG ATGACTTGAGAGCGCGAGTCGCTGGCGGCCACGGCAATAGAATGCACAAC AGTAGCAGTAGCAGTAGCAGCTGTAGACAAGGCGATGGTATCGGAATCGA AGTGGCTGATAACATAGCTGAAGCTGGCTTACGCGGAGCTGCCGGTGCTG CTGGTGTAACCAGGACTGGCGGGAGTAGAAAGTGGGACGACCCGGAGTGG GAGAGAGGACGTCTACCCCCGGAGAGGAGAAGGATCCCCCTCGGTAGCCG TGGTCAGGGTAGAGACAGCACAACCCCCGCCGTGGATGCACTCGCAAACG ATTTCGGGGATAAGTTGGCTGAGAACGGCCCAGTAGCATCTAGGGCAAGC GAGGGTCGCAGACGGGTCGATGGTGGGGTGCTCTTCGCGAAGAGCGGGGT AGGGGGAGGAGGGGAGGGGGCGGGGATTGGGGGTACAAGGAACACGGTCT AGGAAGATCCTCGCCTACGTTGCCCGCAGACGAGATTGTCGCGATGCTTG TGGCGATGGTGATCGGGAAACTGGTGGC
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1062:7301..10028-

>mRNA_P-lacustris_contig1062.567.1 ID=mRNA_P-lacustris_contig1062.567.1|Name=mRNA_P-lacustris_contig1062.567.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=786bp|location=Sequence derived from alignment at P-lacustris_contig1062:7301..10028- (Pleurocladia lacustris SAG_25_93)
ATGCATCATTTCTTCCAGATGCATCATTTCTTCCAGGATGAACGCTGCTT
CCCAGCCGAGTGGCTACGAGGCCGCCGCGTCCTGGAGATCGGTGCCGGCG
CAGGGTTGGTTGGCCTCACCCTTGCACTCCTCGGTGCCGAGGATGAACGC
TGCTTCCCAGCCGAGTGGCTACGAGGCCGCCGCGTCCTGGAGATCGGTGC
CGGCGCAGGGTTGGTTGGCCTCACCCTTGCACTCCTCGGTGCCGAGGTCA
CAATGACCGACCTACCCGAGGCACTGCCCATCCTTCGACACAACACTGAA
ATCACCTTCGGAACCCTGAGCGACGGCGATGGCAACAGCCACAGCAGCAG
TCATGGCAGAGAAAGTCATGGCCGCGCAGCCGGGAAGCCCTGTCGCAGAC
CGGCGATCCGGAAGCTTTGCTGGGGCAATGCGGCTGAAGCGGCAGAGGTG
GCAGCAGCAGCGGCCGCGGCGGCGGCTGTGGAAGAAAATTGTTCGGCGTG
GGAGGGTATGACTTGAGTCACAATGACCGACCTACCCGAGGCACTGCCCA
TCCTTCGACACAACACTGAAATCACCTTCGGAACCCTGAGCGACGGCGAT
GGCAACAGCCACAGCAGCAGTCATGGCAGAGAAAGTCATGGCCGCGCAGC
CGGGAAGCCCTGTCGCAGACCGGCGATCCGGAAGCTTTGCTGGGGCAATG
CGGCTGAAGCGGCAGAGGTGGCAGCAGCAGCGGCCGCGGCGGCGGCTGTG
GAAGAAAATTGTTCGGCGTGGGAGGGTATGACTTGA
back to top