mRNA_P-lacustris_contig1061.565.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1061.565.1
Unique NamemRNA_P-lacustris_contig1061.565.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1061.565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1061contigP-lacustris_contig1061:59443..62129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size638
Cds size627
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1061.565.1prot_P-lacustris_contig1061.565.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1061 59443..62118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815332.240203-CDS-P-lacustris_contig1061:59442..597931622815332.240203-CDS-P-lacustris_contig1061:59442..59793Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 59443..59793 +
1693493481.954221-CDS-P-lacustris_contig1061:59442..597931693493481.954221-CDS-P-lacustris_contig1061:59442..59793Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 59443..59793 +
1622815332.253317-CDS-P-lacustris_contig1061:60854..609581622815332.253317-CDS-P-lacustris_contig1061:60854..60958Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 60855..60958 +
1693493481.9628873-CDS-P-lacustris_contig1061:60854..609581693493481.9628873-CDS-P-lacustris_contig1061:60854..60958Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 60855..60958 +
1622815332.2665544-CDS-P-lacustris_contig1061:61946..621181622815332.2665544-CDS-P-lacustris_contig1061:61946..62118Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 61947..62118 +
1693493481.9705555-CDS-P-lacustris_contig1061:61946..621181693493481.9705555-CDS-P-lacustris_contig1061:61946..62118Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 61947..62118 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815332.279151-UTR-P-lacustris_contig1061:62118..621291622815332.279151-UTR-P-lacustris_contig1061:62118..62129Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 62119..62129 +
1693493481.9786012-UTR-P-lacustris_contig1061:62118..621291693493481.9786012-UTR-P-lacustris_contig1061:62118..62129Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 62119..62129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1061.565.1

>prot_P-lacustris_contig1061.565.1 ID=prot_P-lacustris_contig1061.565.1|Name=mRNA_P-lacustris_contig1061.565.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=209bp
GDGGAGSAAAAAAAAADGDAEDGDEVKGPAAERAEEGRGAGGYSSRLRNK
RLRVAPGTAAEADAAVAGDAAAATVSPEGVDGKKKRTRTRGAGGKRAAAV
TASSAGSWLPRLKPGSEVFSCFRMAGGDRGPGILWYRGTVRVAHRDGTVD
VRYEDGDSRKDVPRTHLAATLPPMISDSRFAQTPGCILWRPGVVPAAAAA
EHGEAGDR*
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mRNA from alignment at P-lacustris_contig1061:59443..62129+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1061.565.1 ID=mRNA_P-lacustris_contig1061.565.1|Name=mRNA_P-lacustris_contig1061.565.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2687bp|location=Sequence derived from alignment at P-lacustris_contig1061:59443..62129+ (Pleurocladia lacustris SAG_25_93)
GGCGACGGCGGCGCTGGCAGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGA
TGGTGATGCTGAGGATGGTGACGAGGTTAAGGGTCCCGCCGCGGAGAGGG
CGGAGGAAGGCCGAGGCGCCGGCGGCTACTCTTCTCGACTCCGAAACAAG
CGCCTCAGGGTGGCCCCCGGCACGGCTGCTGAAGCTGACGCCGCTGTTGC
TGGCGACGCCGCTGCTGCCACCGTCTCCCCCGAAGGCGTGGACGGTAAAA
AAAAGAGGACGAGGACGAGGGGAGCTGGCGGGAAGCGGGCAGCGGCTGTT
ACGGCTTCGTCGGCGGGCTCTTGGTTGCCACGGCTGAAGCCTGGATCGGA
GGTGCTCAAGCGAATACTCGTAGCAATTTTGTGGAAGGGCCGCGTTATTG
GTTTTTGGTACTCTGGGGGAAATGTTTTCGGTTCGGGGCCTTGGTAGAAG
GTTTTTGATGTGAACAGCACCAAGAACAGCAACAACAGCAGTAGTCGTTG
GCCTGGTCCTCGATTTGGCACAAACCGGGTTCCGAGGGAGGACGCTAAAC
CACCCTGGCTCTTTTTTGTTGCTGTACGAAAGTCTCGAGCCTGTTCAACC
CTTCGAAGGCGTTTCTTCGACGGCATTTGGTGAGGCGTCCACCACGGGCG
GGCTTTTTCGCCCAGTTCGGGTGGCTCTCCTTGAGAATACCTTGTACCAG
CTGCTGTAGTAGTCCGTTGTCAAGAAATAGCACCTCGAAGCTTTTTGGGT
TTATTTCCCTTTTTTATTTGTCTAAACTTTGTCCTTACTCTCCCCCCTAC
CAACGAATCACCCAAAGAGCCTTACTATATTTTGTTTCTTCTCGAGGGGG
TCGCTCGTTGCCTGCCCCCCCGGGGGCCGGAACATGGGGTCTGCATCTCA
GAAAATATATGGATCCTATCCCCTATCCCTCCCCAAGGAGATATCAAATC
ATGGAGATGACGGTGTGTCACTTCCACTGTCAACATGACCCTCTTTCTCT
TCTTGTTGTCGCCCGTTTCGAGTTTTTTCATGTTGCAAACGGCTTCTCCA
GATTTTCCCGTTTCGAGTTTCATGTTGCAACGGCTTCTCCAGATTTTCCC
GTTTCGAGTTTCATGTTGCAACGGCTTCTCCTTCTCCACATTGTGATTGT
GAGGCCTCTCTTGTTGCCGTCGTTCCTCTTTTCTTTTCTTGTTTCCGGGT
GAGTGGTTTTTAGATCTCCGTGTTCTCCGACGCTTGGCCCGCTCTTGTGG
GTCTGTCGGGTTTCCTATATTTTTTGCACGTTTTGTCGGATTTTCTTTTT
TCTAGTGGTGTCGTGGTTGTCCCGCCTAACTCTGTGTACCAACGTCGTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTCCTTGTGCCGTGGTT
GCACGCTCTCAGGTTTTCTCATGCTTCCGGATGGCAGGAGGAGACAGGGG
GCCGGGGATCCTATGGTACAGGGGTACCGTTCGTGTTGCGCACCGCGATG
GCACCGTCGATGTCAGGTGCGGTTGCTGTTGACATCGTTTCTGCCGCTGT
CGTCGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTCGTCTTATAGC
ATCAGCAAGGCGTTTTGACCTACGTATACTCTCCGGTAAAGTACGTCACT
TTTCTTTGGCTCTTCTCTTCGCCTTTTCGTCAACGTAAAAAGGGCGAAAC
AAAGAAACGAACGAAAAGGGCGAACAAATGAAATATCTCCCTGGAGTCGC
GAGATATCCCCGATGCAGAGATGCAGAGATTTAATACACATCGAATAGAC
TCAGAGCAAGTCCAACCGTTCGCTAGTCGCAACACAAGGAAGCGCTTCCT
CAGTTACAAGGGGGAAAAGTCTGCGTTTGTCCGCAGAGACCAAACTGCAA
GTGGGTAGGTGCTCTTCCTTTGGAAGAAAAAAACAATGCCTGGCAAGAAA
CGTGGAGCCGATCTCTCCACCCTCTACAATTTCTGCGTGTGAAGTACAAC
CGACTCGGCTCCCTTCACAGTCAGCAAATAAAGTACGGCTGTACTCCACC
CCCGCGCCGCCGCCGCTCCTGACGCGGGCGACGTGGGTGGGGACGCGATG
CATCCCTCCTGCATTGGGACACCATCTAGAGACTCGCCAAGACTCGTCCC
TCAAACCGTGTTACACACCCGAACAACCTTACTTGTAACCCCAACCCACC
TTGTCGGCGAGAAAGAGCAAAGAGGGGGATAGGGCGTGGAAGTGGACATT
TTTTCTCCCACGATTTACTTTTTTCCCTTTTTGTCTCAAAAATTGTTGCT
CGCTTTTTTGTTCGGCTCTTCACGTCTGCCGTGCTCGCCCCTCGTAAATG
CGTTTTTTTTTGTAACACATCCACGTACCCCCGACACACTAGCACACGTT
GCACTCTCTTGCCACCCCCTCCCCCACCCCCTGCCGGGGCACCGTCGCCC
CTCTTCGCCTCACGCCCAACCGCGTCGCCTCCGGTCCTACACCCACATCC
GAAGGTACGAAGACGGGGATTCCCGCAAGGATGTTCCGAGAACACACCTG
GCGGCTACGCTCCCGCCGATGATCTCCGACAGTCGTTTTGCACAGACTCC
GGGATGCATCCTGTGGAGACCTGGGGTGGTGCCGGCGGCAGCGGCGGCGG
AGCATGGTGAAGCAGGAGACCGTTGATTCCGAGGCGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1061:59443..62129+

>mRNA_P-lacustris_contig1061.565.1 ID=mRNA_P-lacustris_contig1061.565.1|Name=mRNA_P-lacustris_contig1061.565.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1254bp|location=Sequence derived from alignment at P-lacustris_contig1061:59443..62129+ (Pleurocladia lacustris SAG_25_93)
GGCGACGGCGGCGCTGGCAGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGA
TGGTGATGCTGAGGATGGTGACGAGGTTAAGGGTCCCGCCGCGGAGAGGG
CGGAGGAAGGCCGAGGCGCCGGCGGCTACTCTTCTCGACTCCGAAACAAG
CGCCTCAGGGTGGCCCCCGGCACGGCTGCTGAAGCTGACGCCGCTGTTGC
TGGCGACGCCGCTGCTGCCACCGTCTCCCCCGAAGGCGTGGACGGTAAAA
AAAAGAGGACGAGGACGAGGGGAGCTGGCGGGAAGCGGGCAGCGGCTGTT
ACGGCTTCGTCGGCGGGCTCTTGGTTGCCACGGCTGAAGCCTGGATCGGA
GGGCGACGGCGGCGCTGGCAGTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
ATGGTGATGCTGAGGATGGTGACGAGGTTAAGGGTCCCGCCGCGGAGAGG
GCGGAGGAAGGCCGAGGCGCCGGCGGCTACTCTTCTCGACTCCGAAACAA
GCGCCTCAGGGTGGCCCCCGGCACGGCTGCTGAAGCTGACGCCGCTGTTG
CTGGCGACGCCGCTGCTGCCACCGTCTCCCCCGAAGGCGTGGACGGTAAA
AAAAAGAGGACGAGGACGAGGGGAGCTGGCGGGAAGCGGGCAGCGGCTGT
TACGGCTTCGTCGGCGGGCTCTTGGTTGCCACGGCTGAAGCCTGGATCGG
AGGTTTTCTCATGCTTCCGGATGGCAGGAGGAGACAGGGGGCCGGGGATC
CTATGGTACAGGGGTACCGTTCGTGTTGCGCACCGCGATGGCACCGTCGA
TGTCAGGTTTTCTCATGCTTCCGGATGGCAGGAGGAGACAGGGGGCCGGG
GATCCTATGGTACAGGGGTACCGTTCGTGTTGCGCACCGCGATGGCACCG
TCGATGTCAGGTACGAAGACGGGGATTCCCGCAAGGATGTTCCGAGAACA
CACCTGGCGGCTACGCTCCCGCCGATGATCTCCGACAGTCGTTTTGCACA
GACTCCGGGATGCATCCTGTGGAGACCTGGGGTGGTGCCGGCGGCAGCGG
CGGCGGAGCATGGTGAAGCAGGAGACCGTTGAGTACGAAGACGGGGATTC
CCGCAAGGATGTTCCGAGAACACACCTGGCGGCTACGCTCCCGCCGATGA
TCTCCGACAGTCGTTTTGCACAGACTCCGGGATGCATCCTGTGGAGACCT
GGGGTGGTGCCGGCGGCAGCGGCGGCGGAGCATGGTGAAGCAGGAGACCG
TTGA
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