mRNA_P-lacustris_contig1061.564.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1061.564.1
Unique NamemRNA_P-lacustris_contig1061.564.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1061.564.1 vs. uniprot
Match: D7FZ75_ECTSI (HECT-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ75_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 2.300e-99
Identity = 164/174 (94.25%), Postives = 170/174 (97.70%), Query Frame = 1 
Query:  457 MSSIQQLLQIMQARPGVSVDQQIAVLHELNTSLTMASGHPSQNRVGGVIQTLVPLLSGANNEVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPMDLQKNALGTVSRLVAPGVCGRRSDVRRAREI 978
            MSSIQQLL ++QARPGV  DQQIAVLHELNTSLTMASGHPSQNRVGGVIQTLVPLLSGANNEVVLLAIRALITCIDITPRAAGSLV SGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFP++LQKNALGTVSRLVAPGVCGRRSD+RRARE+
Sbjct:    1 MSSIQQLLHVLQARPGV--DQQIAVLHELNTSLTMASGHPSQNRVGGVIQTLVPLLSGANNEVVLLAIRALITCIDITPRAAGSLVASGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPLELQKNALGTVSRLVAPGVCGRRSDIRRAREV 172
[Close]
BLAST of mRNA_P-lacustris_contig1061.564.1 vs. uniprot
Match: A0A835Z9G4_9STRA (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G4_9STRA)

HSP 1 Score: 149 bits (376), Expect = 8.510e-38
Identity = 75/155 (48.39%), Postives = 104/155 (67.10%), Query Frame = 1 
Query:  502 GVSVDQQIAVLHELNTSLTMASGHPSQNRVGGVIQTLVPLLSGANNEVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPMDLQKNALGTVSRLVAPGVCGRRSDVRR 966
            G  V QQ+  L EL TSLTMASG+    R+G ++ +L+ LL+  ++EV L A RALI  IDI P AA ++   G +  +C  LL++ D+D+AE CL+CL L++ + PRAV+ AGG +AC+AFFDFFP DL++ AL  V+ L A G  GR  D+ R
Sbjct:   11 GADVHQQVTALTELTTSLTMASGYMGNVRLGPIMPSLLALLASPSSEVALQATRALIAAIDIAPHAAAAVAADGGLDVLCGHLLRMADIDLAEQCLRCLRLVAAEAPRAVVAAGGLRACMAFFDFFPRDLRRLALSVVAALCASGALGRAEDLPR 165
[Close]
BLAST of mRNA_P-lacustris_contig1061.564.1 vs. uniprot
Match: D7G7E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E6_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.160e-30
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 1 
Query: 2407 TVFLSGGLESWQVAFVLEVADGAVLKAWSKTLGQSVAVLESADAPDSALEPGWLLQSRLLSSIARVVSAAPVAVQQLFDLGVPTLL 2664
            +V L+GGLE+WQVAFVLEVADGAVL AWSKTLG SVA LESADAP+  LEPGWL+QSRLLSSIARVVS APVAVQQLFDLG  T L
Sbjct:  430 SVVLAGGLEAWQVAFVLEVADGAVLSAWSKTLGDSVAALESADAPEGELEPGWLMQSRLLSSIARVVSTAPVAVQQLFDLGARTKL 515
[Close]
BLAST of mRNA_P-lacustris_contig1061.564.1 vs. uniprot
Match: A0A6A1WG88_9ROSI (HECT-type E3 ubiquitin transferase n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1WG88_9ROSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.210e-13
Identity = 49/135 (36.30%), Postives = 80/135 (59.26%), Query Frame = 1 
Query:  517 QQIAVLHELNTSLTMASGHPSQNRVGGVIQTLVPLLSG--ANNEVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPMDLQKNALGTV 915
            +Q+A L EL   L+  +     + V   +  L+  L+   +N +++LLAIRA+    D+ PR++  L+   AV  +C+RL+ ++ +DVAE CL+ L  +S++ PRA L+AG   A L + DFF   +Q+ AL TV
Sbjct:  124 EQLAALTELCEVLSFCTEDSFSSMVADSLSPLLVNLAKHESNPDIMLLAIRAITYICDVYPRSSNFLIRHDAVAALCQRLMAVEYLDVAEQCLQALEKISREQPRACLQAGAIMAVLNYIDFFSTSVQRVALSTV 258
[Close]
BLAST of mRNA_P-lacustris_contig1061.564.1 vs. uniprot
Match: A0A8J5KUA3_ZINOF (HECT domain-containing protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KUA3_ZINOF)

HSP 1 Score: 82.8 bits (203), Expect = 3.240e-12
Identity = 44/113 (38.94%), Postives = 69/113 (61.06%), Query Frame = 1 
Query:  601 IQTLVPLL-----SGANNEVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPMDLQKNALGTVSRL 924
            ++ LVP L     +G N E++LLAIRAL   +D  P +A ++   G +  +C +LL I+ +DVAE C + L  +S+  P A L+AG   A L + DFFP ++Q+ A+ TV+ +
Sbjct:  112 LEELVPSLLKLNANGRNPEIMLLAIRALTYLLDARPSSAAAIARHGGITVLCGKLLAIEYLDVAEKCHQALEKISRGYPVACLKAGAVNAVLTYIDFFPSNIQRVAVITVTNM 224
[Close]
BLAST of mRNA_P-lacustris_contig1061.564.1 vs. uniprot
Match: D5GFJ7_TUBMM (HECT-type E3 ubiquitin transferase n=5 Tax=Tuberaceae TaxID=40289 RepID=D5GFJ7_TUBMM)

HSP 1 Score: 78.2 bits (191), Expect = 8.810e-11
Identity = 47/143 (32.87%), Postives = 80/143 (55.94%), Query Frame = 1 
Query:  520 QIAVLHELNTSLTMA-----SGHPSQNRVGGVIQTLVPLLS-----GANNEVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPMDLQKNALGTVS 918
            Q+  L EL   L ++     SGH S ++    ++ LV L+      G N E++LLA R +   ++  P A  ++V  GAV  +C++L++IQ +D+AE  L  L  +S + P +++  GG  ACL + DFF  ++Q+ A+ T +
Sbjct:  278 QLIALQELAEILLVSTEDNLSGHFSPDQF---VKELVSLMEDQGPFGENPEMMLLACRCIANLMEALPAATANVVYGGAVPVLCRKLMEIQYIDLAEQALSTLEKISVEYPTSIVREGGLTACLTYLDFFATNVQRTAVTTAA 417
[Close]
BLAST of mRNA_P-lacustris_contig1061.564.1 vs. uniprot
Match: A0A3N4L5S2_9PEZI (HECT-type E3 ubiquitin transferase n=3 Tax=Morchella TaxID=5193 RepID=A0A3N4L5S2_9PEZI)

HSP 1 Score: 76.6 bits (187), Expect = 2.530e-10
Identity = 46/143 (32.17%), Postives = 80/143 (55.94%), Query Frame = 1 
Query:  520 QIAVLHELNTSLTMA-----SGHPSQNRVGGVIQTLVPLLS-----GANNEVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPMDLQKNALGTVS 918
            Q+  L EL   L ++     SGH S ++    ++ LV L+      G N +++LLA R +   ++  P A  ++V  GAV  +C++L++IQ +D+AE  L  L  +S + P +++  GG  ACL + DFF  ++Q+ A+ T +
Sbjct:  109 QLIALQELAEILLVSTEDNLSGHFSPDQF---VKELVSLMEDQGPFGENPDMMLLACRCIANLMEALPAATANVVYGGAVPVLCRKLMEIQYIDLAEQALSTLEKISVEYPTSIVREGGLVACLTYLDFFATNVQRTAVTTAA 248
[Close]
BLAST of mRNA_P-lacustris_contig1061.564.1 vs. uniprot
Match: A0A0J8TNX1_COCIT (HECT-type E3 ubiquitin transferase n=1 Tax=Coccidioides immitis RMSCC 3703 TaxID=454286 RepID=A0A0J8TNX1_COCIT)

HSP 1 Score: 75.5 bits (184), Expect = 5.520e-10
Identity = 45/140 (32.14%), Postives = 75/140 (53.57%), Query Frame = 1 
Query:  520 QIAVLHELNTSL------TMASGHPSQNRVGGVIQTLVPLLSGANN-EVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPMDLQKNALGTVS 918
            Q+  L EL+  L      T++    + + V  ++  + P  +G  N E++LLA R L   ++    +  ++V  GAV  +C++LL IQ +D+AE  L  L  +S D P +++  GG  ACL + DFFP   Q+ A+ T +
Sbjct:  290 QLIALQELSDLLLVSNEDTLSGQFAADSYVKELVTLMEPSETGEENPEIMLLACRCLANLMEAIRGSVANVVYGGAVPVLCRKLLDIQFIDLAEQALSTLAKISVDFPASIVREGGLTACLTYLDFFPTSTQRTAVTTAA 429
[Close]
BLAST of mRNA_P-lacustris_contig1061.564.1 vs. uniprot
Match: A0A2T9Y0T8_9FUNG (HECT-type E3 ubiquitin transferase n=2 Tax=Harpellales TaxID=61421 RepID=A0A2T9Y0T8_9FUNG)

HSP 1 Score: 75.5 bits (184), Expect = 5.740e-10
Identity = 43/143 (30.07%), Postives = 79/143 (55.24%), Query Frame = 1 
Query:  514 DQQIAVLHELNTSLTMASGHPSQNRVGGVIQTLVPLLSGANN----EVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPMDLQKNALGTVSRLVA 930
            D++I+ L +L++  ++++     +    ++Q    LL   N     E  LL+IR++   I+  P     LV+   V  +C +LLQ+QD+D+A+  L  L  +S+D P+A+++AGG  A + + DFF    Q+ AL  V+  ++
Sbjct:   79 DEKISALRKLSSIFSVSNEENLLSSTPIILQISKLLLEIINYSEEAEECLLSIRSIANLIEAQPGITSYLVDQNLVLALCNQLLQLQDIDIADQVLTTLEAISRDFPKAIIDAGGMVAAMCYIDFFTTSSQRTALQIVTNSIS 221
[Close]
BLAST of mRNA_P-lacustris_contig1061.564.1 vs. uniprot
Match: E9CWK6_COCPS (HECT-type E3 ubiquitin transferase n=6 Tax=Coccidioides TaxID=5500 RepID=E9CWK6_COCPS)

HSP 1 Score: 75.5 bits (184), Expect = 5.910e-10
Identity = 45/140 (32.14%), Postives = 75/140 (53.57%), Query Frame = 1 
Query:  520 QIAVLHELNTSL------TMASGHPSQNRVGGVIQTLVPLLSGANN-EVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPMDLQKNALGTVS 918
            Q+  L EL+  L      T++    + + V  ++  + P  +G  N E++LLA R L   ++    +  ++V  GAV  +C++LL IQ +D+AE  L  L  +S D P +++  GG  ACL + DFFP   Q+ A+ T +
Sbjct:  290 QLIALQELSDLLLVSNEDTLSGQFAADSYVKELVTLMEPSETGEENPEIMLLACRCLANLMEAIRGSVANVVYGGAVPVLCRKLLDIQFIDLAEQALSTLAKISVDFPASIVREGGLTACLTYLDFFPTSTQRTAVTTAA 429
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1061.564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ75_ECTSI2.300e-9994.25HECT-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A835Z9G4_9STRA8.510e-3848.39HECT-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
D7G7E6_ECTSI1.160e-3082.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6A1WG88_9ROSI1.210e-1336.30HECT-type E3 ubiquitin transferase n=1 Tax=Morella... [more]
A0A8J5KUA3_ZINOF3.240e-1238.94HECT domain-containing protein n=3 Tax=Zingiber of... [more]
D5GFJ7_TUBMM8.810e-1132.87HECT-type E3 ubiquitin transferase n=5 Tax=Tuberac... [more]
A0A3N4L5S2_9PEZI2.530e-1032.17HECT-type E3 ubiquitin transferase n=3 Tax=Morchel... [more]
A0A0J8TNX1_COCIT5.520e-1032.14HECT-type E3 ubiquitin transferase n=1 Tax=Coccidi... [more]
A0A2T9Y0T8_9FUNG5.740e-1030.07HECT-type E3 ubiquitin transferase n=2 Tax=Harpell... [more]
E9CWK6_COCPS5.910e-1032.14HECT-type E3 ubiquitin transferase n=6 Tax=Coccidi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1061contigP-lacustris_contig1061:34325..47906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score318.9
Seed ortholog evalue1.5e-84
Seed eggNOG ortholog2880.D7FZ75
Preferred nameUFD4
KEGG koko:K10590
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0010992,GO:0010994,GO:0016043,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019941,GO:0022607,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0032991,GO:0034622,GO:0036211,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051258,GO:0051338,GO:0051348,GO:0051603,GO:0051972,GO:0051974,GO:0060255,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:2000112,GO:2000113,GO:2000278,GO:2000279
EggNOG free text desc.negative regulation of histone ubiquitination
EggNOG OGsCOG5021@1,KOG0168@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons10
Model size3163
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1061.564.1prot_P-lacustris_contig1061.564.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1061 36749..41709 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815332.758795-UTR-P-lacustris_contig1061:34324..347211622815332.758795-UTR-P-lacustris_contig1061:34324..34721Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 34325..34721 +
1693493482.321667-UTR-P-lacustris_contig1061:34324..347211693493482.321667-UTR-P-lacustris_contig1061:34324..34721Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 34325..34721 +
1622815332.7733157-UTR-P-lacustris_contig1061:36689..367481622815332.7733157-UTR-P-lacustris_contig1061:36689..36748Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 36690..36748 +
1693493482.3429677-UTR-P-lacustris_contig1061:36689..367481693493482.3429677-UTR-P-lacustris_contig1061:36689..36748Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 36690..36748 +
1622815332.8555212-UTR-P-lacustris_contig1061:41709..419671622815332.8555212-UTR-P-lacustris_contig1061:41709..41967Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 41710..41967 +
1693493482.395596-UTR-P-lacustris_contig1061:41709..419671693493482.395596-UTR-P-lacustris_contig1061:41709..41967Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 41710..41967 +
1622815332.8690407-UTR-P-lacustris_contig1061:43422..446011622815332.8690407-UTR-P-lacustris_contig1061:43422..44601Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 43423..44601 +
1693493482.4038734-UTR-P-lacustris_contig1061:43422..446011693493482.4038734-UTR-P-lacustris_contig1061:43422..44601Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 43423..44601 +
1622815332.879266-UTR-P-lacustris_contig1061:45352..454371622815332.879266-UTR-P-lacustris_contig1061:45352..45437Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 45353..45437 +
1693493482.4115083-UTR-P-lacustris_contig1061:45352..454371693493482.4115083-UTR-P-lacustris_contig1061:45352..45437Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 45353..45437 +
1622815332.8895197-UTR-P-lacustris_contig1061:46086..462061622815332.8895197-UTR-P-lacustris_contig1061:46086..46206Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 46087..46206 +
1693493482.4199672-UTR-P-lacustris_contig1061:46086..462061693493482.4199672-UTR-P-lacustris_contig1061:46086..46206Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 46087..46206 +
1622815332.9001665-UTR-P-lacustris_contig1061:47390..479061622815332.9001665-UTR-P-lacustris_contig1061:47390..47906Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 47391..47906 +
1693493482.4296203-UTR-P-lacustris_contig1061:47390..479061693493482.4296203-UTR-P-lacustris_contig1061:47390..47906Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 47391..47906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815332.7865822-CDS-P-lacustris_contig1061:36748..367841622815332.7865822-CDS-P-lacustris_contig1061:36748..36784Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 36749..36784 +
1693493482.3505404-CDS-P-lacustris_contig1061:36748..367841693493482.3505404-CDS-P-lacustris_contig1061:36748..36784Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 36749..36784 +
1622815332.8014526-CDS-P-lacustris_contig1061:37956..381061622815332.8014526-CDS-P-lacustris_contig1061:37956..38106Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 37957..38106 +
1693493482.3585827-CDS-P-lacustris_contig1061:37956..381061693493482.3585827-CDS-P-lacustris_contig1061:37956..38106Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 37957..38106 +
1622815332.8166602-CDS-P-lacustris_contig1061:39451..396221622815332.8166602-CDS-P-lacustris_contig1061:39451..39622Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 39452..39622 +
1693493482.368952-CDS-P-lacustris_contig1061:39451..396221693493482.368952-CDS-P-lacustris_contig1061:39451..39622Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 39452..39622 +
1622815332.828298-CDS-P-lacustris_contig1061:40918..410801622815332.828298-CDS-P-lacustris_contig1061:40918..41080Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 40919..41080 +
1693493482.376801-CDS-P-lacustris_contig1061:40918..410801693493482.376801-CDS-P-lacustris_contig1061:40918..41080Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 40919..41080 +
1622815332.8392975-CDS-P-lacustris_contig1061:41679..417091622815332.8392975-CDS-P-lacustris_contig1061:41679..41709Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 41680..41709 +
1693493482.3847885-CDS-P-lacustris_contig1061:41679..417091693493482.3847885-CDS-P-lacustris_contig1061:41679..41709Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 41680..41709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1061.564.1

>prot_P-lacustris_contig1061.564.1 ID=prot_P-lacustris_contig1061.564.1|Name=mRNA_P-lacustris_contig1061.564.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=183bp
MSSIQQLLQIMQARPGVSVDQQIAVLHELNTSLTMASGHPSQNRVGGVIQ
TLVPLLSGANNEVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQ
IQDMDVAEACLKCLHLLSKDNPRAVLEAGGAKACLAFFDFFPMDLQKNAL
GTVSRLVAPGVCGRRSDVRRAREILLFCESAS*
back to top

mRNA from alignment at P-lacustris_contig1061:34325..47906+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1061.564.1 ID=mRNA_P-lacustris_contig1061.564.1|Name=mRNA_P-lacustris_contig1061.564.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=13582bp|location=Sequence derived from alignment at P-lacustris_contig1061:34325..47906+ (Pleurocladia lacustris SAG_25_93)
ACGCGAGGCATCGCAACTCACAAACAGGAAGCGCGTGCGTGGCGCTCCTT
GTCGAAGGACAAACATCGAGAGAGGGAGAGAGATAAACAAGCCGAGCGAG
AGAGGGGACGAACAGAAAGTTATATATGACCTTGCGCTGGTGCGCCCCTC
CGCGTGAGATCATAATCATTCGATCCCTTGCGACGAGAGCACCTGTCTGC
TTCTCATTACCCTCCCTAAACTCCGGATAATAGTATCCAGGAGTTTGGGG
GGTGGAGGCGAGGACTCGAAGCCATCCTGGAGAAAGGGCTCGAGATTGCC
ATAAATCCTGTGAACGTGATCGACTGCTTTCGTCTCGCGGCATTTACGGA
GAGAGTGTTCTCCCAACCCCTTTGTACGAGCAGCACGAGAGAGCCTGGTA
AGACTCACTTGCACTGAGAAAAGTTAGTCTGAGAGACAGAGGGGGGAGGG
ACGTACGTGCCTCCTACCCCTTTGTTTGTGTCCACAGCAGTACGCGTCAG
CTTGACCTGCCCGTTGCAAAATGCACTAGGCTGCAATCTAAGAGCAGTGG
TGATGAACGTCGTGGCGGAGGTTGACCCTAGGTGGACGTGCAGCAGGTCT
TGAGGAAAAGAGGGCGAGGGGCGGTGAGTCCCCCGGCGTGTGCATGCGTT
CTTTGCGTAAGCAGGGTCGCGGTGCACACAAGGAGGTAGCATTTTGCCAT
CTCGTGCAGCGGAAGTTGCTTCCGCGCGCTCAGGGCCAACTATCCGGCAG
TCCTAAATTGATGTCCGTCTATGCCCAGTGAGTATATTGCGCGGTTTACC
CGTGTCCGACCTTGTGTGGCATGTAGGAACACCCACGCGTCGCGAGGGAT
AACGGGGACGCAGCGGTAGCACACCACTACGCCCAATTCTGTGACCAGAG
ACCAAAGATAAATCCCTGCCTTGCCGCTGTTTTCAACTTATCCGCCCCTT
TCGCTCCATGCTTACACTTCTGCGAGACCAACCCTGGATCGGAGATAGCG
GAGATAGTGTAGTTGACCAATCAGATGCATGAACGAACGAAACACGCCGC
ACATGGGAGGCCGGTGCAGATGGCAGCAGTTTACCGCAGGATTCACGCCG
CACACAACATCTTCACGCCTCACACGCACACACACACACACAAATGCACG
CGGGAGGTTTCGTCAAGAACCCTTGTCCCAGTGAGAGGCACCCATGCCAA
CCGGTTACTCAAGAAACAGTCGCAGCCACGCACTGCAAGCTAGCCCGGAG
GCTGACAACTTCCGTTCAGTCTATATCCCGCGGTTTATCCTGTCAAGATA
CCCCGCAGGCTGGGAAGATTGAAAGCTTCGTGCATGTTGTCCCTCTCGTT
GAGACGGACGACAGACTCATCGTTGCGATTCGTGTAAGCCCGCTTTCCCG
TTCGATGCCGTATGCCTCGAACAGAGCAGCCGATGCACGTCCGAGGGTGT
CTGTCCCGGGGGGTTTTATTCAACAGCGGCTTTTTCGGAACAGTACGTGG
CGTCAAAGAAAGACTACTGTGTTGTACCCTACGCGGGGAAGTCCCCAGGA
AGTTTTGGTCAAGAAGTCTTTGCAGGAACGGTTGACATCACGCCTGCCGC
CTGCTTGACTTTCTTGCTACATGCGTCGAAGTGTCTTCTAGGCAACGTGT
GAGGATGCCGCTACGAACCCTGCGGCATGTCTCGTGAATGTTGTGCATAT
GACTTGTATGCATGTCTCCCGAATAAACCTGGTTCAGTTTGGTAAGTGGC
TTGTAAGCCGATGGCACACGGCCTGTTGCAGCGGTGCGCGGCCCCAAGAC
TCCTCGACGGCACAATTCCCTCGTTGAGATCGATCTGTGTGCGACTGCCC
GCTCGCTCTCCGACATCTCTCGACAGTTTCGTTTTGCCGGATTTCATAGG
TCGTACGGTATGCATAGACACCCAGAGCAACAATGCCGATGGCGACGCAG
GCATGTTCACGAATTCCCCCCGAACTTCTTCCTTATCCGTCGCAGCTCAT
TCCGTTCAACTGGAGCTGACTCCCGTAGCCTGTCTTAACGTTCGATGAGG
CGGCACGGCACGTTTCTTGGATGGCGATGTCCATCGATCGTGTTGCTACC
ATCGTATAATATCATAAAATGCGATACACTCGCTCACTGCCGGTGTCTCT
TGTTTTCTTTTTTTGTTGCTTGAGATCATCACCCTCCAGCTTTTCCAAAG
CACCCACATCTTGCGAGGCCCTTCACCTTGATCAACACCTCAGCCTGTGT
GCACGGCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCATCAC
ACACACTGCACACCGTATTTTCTGAGCCTCATTCTCTCTCTGGTTCCTTC
CAATTCTTTTGCCAGGAAGCGCGACGTGCCGGAAGCGCCGGCATCAGCAA
GGTTGTGCTTGATCCCTGTTGACCATGTCGAGCATTCAGCAACTCTTGCA
AATCATGCAGGTGAGCTGTTGCGGTCATTATTCTTACTCGCTCTTTTTTT
TCGGGAGGGGGAGGGGGTCTTGGCTGCAGTAGTCGATGGTGACCGTCCGC
TGACCTTATCGTACTCAACATGCCCGCCCGAGCATGCTTCGTGGTTTGTT
GTTGTTGTTGTGTTGGCACTTGTATAAGGTCATATGCGTACATGTTCTTC
AAAATGTTGCGATTGCCTGTGACGCACTGACTTCAGCACGGTGCAAGCAC
CTCGCCTCAAAGCAGGCTATCGGTGCTGCTGGCGCTGTGCACGAGCTACA
GCTTTGGAGAGAAATGTAGCAGCTCATGAGTAGTGTTTTCCTCCATCTCG
AATCAACGTATGGATCGAACCTAGCTTTATTCAGGTGGCGAATCAGTCAT
CTGAGTCCATGCGAGCATTAACATCGAACCCCTTGTGCAATCAAGTGCCA
GATCCCCCGTATGGATGTAGACAGGCAGGAAACATCGAAACTTGAAAACA
CCCCCGCCCCGGAGGTCTCATCGCTGTTTCGCGACGATAATGTCCACGTT
TACGGTTTCCGCACGCGCCCTACAAGCCCACTCGAACCTGGGTCCCACAT
CAAGGCTCCTCGTGCTGTCGCTGCTGTTGACTAACTCTCACATTGTAGCT
CGTAGTTCTCCGCTGCTGCTGTTGCTGTTGCTGTTGCTGTATTTGTTTCC
CTTTTTTTGCTGCTGATGTGTTTGTTGACCATACCATATACCATACCACG
TACCATACCGTATACCACATGTACCATACCTAGGTTGGTTTGTATGCCAT
GCGCCTGGTTCTTTTCTTGCAATGAGTTCGTTGAACCTGCAGAACGAGCA
TCATCTACAGGCGCACACTTGTACACGATTTATAAATCAAAGCTGCGCAT
GATACAAGTACATGATATTCACGGCGAAGACAACGAGATGGTTGTTGTGT
TTTTTCCACCCTCCCGTGGGTCGCGCTGACCGGTGTCTTCCGCAACGTTC
GCCGGGGCACGTCCCACGCGCAGTGGGTTTTGTACAGATAACACCCGCGA
GAGCGTGCCTGCGTTTCCCTCTCAGCCAATGAGAAGGCGACGCGACAGTC
CCGTCTTATCGTGAAAAAAATTCTTGGACAATTTTTGTCGCAATGTTAAC
TGTAAGTGTGTGTGGGTCTGTTACCGACGCAGGCTCGCCCGGGGGTGTCA
GTGGACCAGCAGATCGCCGTGCTGCACGAGCTCAACACGTCTCTCACCAT
GGCCTCGGGGCACCCCAGCCAGAACAGGGTCGGGGGCGTCATCCAAACCC
TCGTGCCCCTGCTCTCTGGGGCTAACAACGAGGTAGATTCTTCGTTTTAT
TTTTTAGAAAATATACTATACACCAAAGAAAGGGACTGCCACCCGAGGAA
TTTCTCAGGAGGCGCTTTGCTATATTTTTTGCGGTGACGACGAGTTGCCG
AAAAAGGTTGTCGGACGCTCTGGTGCGGTGCCTGATGTGCCAACGACTAA
CCGTTTTTTGTCGTTTTTTCTTCTTTCTTCGGCTTGGAGGAAAAAAAGTG
CTTCAATAGGGCTGTGTGGCTTTCGTCCTGCGGGGGCGAGGCTGGAGCGT
CCAAACATACCGAACGGTCTGGAAGTGACGGTCCAGAAAGATGGGATAGC
CGTATATGTATCTATAGTCTGGAAGTAGCAGGTCCAGATAGGATGGAATG
TGATGGGATGGGATGACGTTGCAAACGTTGCAACACACACACACCGCCCG
GCGGTGATGAGCACGGTGCCAATTTTGAGATATTTGAGTCTTTCTCCCAA
GTAACTGACGTCTGTGGCGCGGAGCATGTGGGTGTCGATCTTTTGTGACT
TGTGATCTGGCAAGATGGGGTAAGGGGATGTATAAGAGATCCGATAGGAA
GGAGGACAACGGGGAACATTCGATAAGACAAGAGGATACTAAAAAAAGGT
GCGGGAAGACTGGAGAAGGAAAGCAAGGCGTCCCTCCCCGCCTGATGTTA
GGAGGGTGGGGGGGGTGTTGCAGTAGTGGTGGTTTTCCTTGGACTGTGTG
CTTTGTATACGCAAAACCGGCCAATCATCTCCTTCGGTTTTCTGCCGATC
TTGATCGGGGAAGAAATTTCTTAGGAAATATCGAGCCTGTCGCTCGCGGT
GAAGCTGTGCTTGCTCTTCTCCGGATCGCTATGCACATATCTTCGCTTTC
GAGGTCGTTAGACCCGTCGTTCCAGGCAGAGTGCGTACATCTATGCCACG
GTATTTCAAGCTACAGGGGTGTGTACGTGTCGAGCCGCGCCGCCCAACGC
GCGCGCGAGGTCTCGAGGAGAGAGGTCGGATCAAGGTTGGACGTCTGGGA
AGCATTCAACCAAAAACCAACCGAATTTTTCGGATCCTCCTCTTTTTCTG
TTTTTTTTTTCTCCTTTTTTTTCTGTTTTTTTTTTCTCCTTTTTTTTCTG
TTTTTTTTTTCTCCTTTTTTTTTTCTGTCTGTTTGTTGCTTTTCGTGTTA
CTTTTCTTGGGTAGTCAGGGTTTGACTGGACCAGGAAGGCGTCCGAGTAA
GTTGGACCACAAGCAGACGGACGATGGGAGGTACTGAGCATAGAACGGAA
CGGTTTATAATGTGAACACAACAACAACAACAACAACAAAGGCCTACGCG
CGCACACACACACACATACACACACAGGTGGTTTTGCTGGCAATCCGGGC
GTTGATCACGTGCATCGACATCACTCCCAGGGCGGCGGGTAGCCTGGTGG
AAAGCGGCGCGGTCAAGCCCATGTGCAAGCGGCTGCTGCAGATCCAAGAC
ATGGACGTTGCGGAGGCTTGCCTCAAGTGCCTGCACCTTCTGTCCAAGGT
TTGTGCCTTGCGTGTTTGCGAGTAAAAAGCAAGACAAAATAAAAAAAAGC
GTTTCGTTTGTATGACAGTCCCGCCCTATAACGGGATAACCAATGAGAGG
GCGTCATGACGGTCCCGTCAGTCTTGGCTGAACAAAAACACGCTCGAACG
CTTGGTAAACCTCGGGCTCCACTGATAGGGGGGGCACGCGAAGGAGGTTG
GAATGAAGGGTAGAGTGGATCAAAGACAATAATGATAGAAGAAGAGGAGT
GAGACATGAGTGAGACAAGATTGCACGAAGCAAAGAGACTTACCTGTCAT
TTTTCGCCAGCGGGTCGAATGCTCAGGGACAAACCTACCCTCCCAATCTT
CCACAAGCCCAAAAAAGAATGGGAGGGGGGCTGTTTTTGGGGTTTAGTGT
GGGCCATGAAAAAAAACATACGTTATCTTGTTATGTAGGGTTAAGTTTCT
CGAAAGCCTTCTCGATACAAATTCCGCTCTAATACCCAACCTGTGTTAGC
CCGAAAAATAATCAGAGAGGGAAGAGGGGGGGTCCATTTGGGGTCGCGGA
TAGGGGGACGCGGATAGTATCCCGACATCAACATACCAACTGGGACGAGG
GCGGCGTGGACGGCGGACGACGACAGGGAAAAGGCAAGACAAGCCTAACA
ATAAGAAGCCTACAAGCATGATTTCGTTCGTTTTCGTTCTCAGGAAGTCA
AGAGCGCGACTCGTTTTCGGTTTAGGCACTGCCGTCCTGTGCAGCTTTGT
TGTCTCGTCTCTCATCACGGCCTGGGGAGCCTCACCTTCTTGTCTGCTGT
GACACCGTCCCAGATCGTGTTTATGCCGTCCCAGATAGTGTTTATGCCGT
CTCAGATAGTGTTTATGCCGTCCCAGATAGTGTTTATGCCGTCCCAGATA
GTGTTTTGTGGTGTTTTTGCGTAATGAATGGGTAGCGGATGCGAAACTGA
CGTAACGCATGTGTTGAGTCCCCTTCAACGAGATTTTTTTGTGTGTAACG
GATGTGTAGACCTACGACAGCTGTGTCCCCTCCAACCTCCAACAACACCT
CTGTTATCTTCGTGCGTGCTCTAAAGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTATCTCATAATTGGCGTCAATCGCGCTAACCT
GCTGACCAATGAAAAGACGCCAGTCGTCGCGGGACATAAAGCGCTAGAAC
GCATATACACCGCGGGTCCCCCTGACGTAGTCTCTCTCTCTGTGTGTGTG
CGTGTGTGGTTGTTTTTCTCCCTTTTGCTTGGCGCGCTCCCAAGGATAAT
CCTCGAGCAGTCCTCGAGGCAGGGGGCGCGAAGGCCTGCCTGGCGTTCTT
CGACTTCTTCCCGATGGACTTGCAGAAGAACGCGCTCGGGACCGTTTCGC
GCCTCGTTGCCCCGGGAGTCTGTGGGAGGCGGTCGGACGTCCGTCGGGCT
CGAGAGGTGAGAGGTTGGTTGTGGCGATGGTGATGAGTGGTTGTGGCGAT
ATTGCTGTTGGTGGTGGTGATTGCTGTTCGTGCCATTGTTTTGTTGTTGG
TTATGGTTATGGTTATGGTTATGCTGCGTTAGCTGGTTGAGCGTGATACC
CTTTTTTCTGGTAGAGCGGACAAAACGCATTCGTGATCGTGACCCGTGCG
GGTTGTTTTCGAGCACGCCGCGTGCCTGCTGGCGGTTAGCCACAAGCGCT
TTTTGACGGCGTCCAGCATCCCTCTTCAATCCCTCCTCTGATAAGCCTCG
CCGTCCCTCGCCCCCGACGCCGTGACGTGAAAGGCCCTCTTCTTCCTCTA
GGAAGGGTCTTGTGAAGCAATCCCCCCCCCACACCCCTTCCACCCCACAC
ACCCTCAATTGAATGACTTGATATGCGTACTCCCCCCCACCCCCTCAATT
GAATGACTTGATATGCTTACCCCCCACCCCCTCAATTGAATGACTTGATA
TGCTTACCCTCCCCACCCTCAATTGAATGACTTGATATGCTTACCCCCAC
CCCCTCAATTGAATGACTTGATATGCTTACCCCCCCTCCCGTGCTGCCAA
TGAAGATTCTCCTTTTTTGCGAGAGTGCCTCATGAAGCAAAGCCCGCGGA
GGAGCGCCTGGCGGGGCCCGGGCCGCGGCCAGCGGCGGGTCCAGTGCTTC
GAGCGGCAGCGTAAGCACGGGCGGCGGCGGCGGTAAAGACGGAGCCGCGG
ACGCAGCTCAGATGGCCAGCCTGTGCCTGGAGAGAATGGTGGTGGCGTTT
TCCACGCCGATGGAGAGGGACGGCGAGGTGGCACCGCCATAGCTCGTACC
CCTAGGCAGAGGAGCCTCTCCCCGTTCAGCGTTACCACCCCAGGTAAGGG
TACCGTACGAAGATTGTGGAGAAGCTAGCTCTTCATTTTGATTGGTCGAG
ATTTCAGTGAGCGCCGGAAGGAGAGCTAACAAAGGGTATAGTACTACGCG
GAAATCAAACACACGCACTCAACACCTGGCGGGGATAGCGGGAGAGGGTT
TAAGAGCTCTTCATGTAGAGAGGAAAGACCACAGGGTAAATGTGGTAGAC
ACCGCGGAAGACAGACAGGACGAAGCAGGGCTGTCGAACAAACTTGACAA
AGAGGTGGCTGGCGACTACCAAAAACAAAATAAAAAACCGAATCAATGCA
GCAGCGGAATCCAGTGGAGAGCGATGCGACAACAACCGATGATGCCGTAG
ATGTGCTTCAGTTGGGCACCTCCCGCGGACCGATTTTGAACGCTGGAACG
CTCTCGCCGGCCCCGAAAGGGGTGGTTCCGGAAAGATGTCGTTGAGTGTT
TTCCAGTGACCACCGTACCGATTGATTGTTGTTCACAATCCTCTTGGTTG
TGGAGCAATCGATCGCTGGAAGGCGTTCTAACGGGGGTGGGTTCGCCGCT
CTCTTGCGGTAGTTGTTGGTAGTGGTGGTGGAAGGCGTTCTAGCGGGGGG
GCGTTCGCCGCTCTCTTGCGGTAGTTGGGTTAGGATTGGGGTTAGGGTTT
GGTGTTGGTAGATGGTGGAAGGCGTTTTCGGTGTCGCAGTCGCCGTTTTG
TGTGCTATCATATGGCCGTCAATCACTGTGTTTATTCCGTGGCAACCGGA
GCTAGAGCGAAGTTTGTCTGCTGCTGCGCGTGGAAGACACAGCTATCAAG
CTAGACGGAATGAAGGCTTGCGCCCGTCGTGTCATGTCCATGCGTGGGTC
GTTCTTCGAACATCATCCGCCTTCTCTTATGGGCTGACGAATGAAATCCC
GGACTCTTGAGCGGTGATCGATAACGAACGATATGTCCGTGTTCATGGGT
CCTTCCGTGGGTACTCGGGGCATGGGGTCTGTGTGTGTTTGCGATTTGTG
CGCACATGGTCCAGGTCCAGGTTGTCGCCTGTTTTTTTTCCGTTGATGGG
GCGTCGCTTGATCATCTCAGTAGTTGCTGGTAGGGTTCTTACGGTTCTCT
AAGGACGATCAGCCCAGGTTGATGGCGCTCTTGCGCTGGGCCTCGGTGTT
GTTGCCTATTTATTCCGTGGTGCACGCCTACTTGCATTTTTACCGCCGCT
CTTGGCCTCCGAAGCAGTATCGCATTGCAGCCTCGGTCGAGGATGGGTGG
ATGTATTTTTTGTTTTGTTTGGATTGCCACAAGTCGGCCGCATTTGTTTT
TCCCTTCAACGTCTCGCGAAAAAAAAAAAGATCTACGAAGATCCGCGAGA
TCTACGAATAGGTGCATGCGTCCCCGCCCGCTCCCCCTTCAATCGTCTTC
TTTTGCTGTGCTCGTCCTTCGTGTTGAATGTTTTGGACCTGTCCGCAGCA
GGCCACCCGGGGTGTCACGCCCTCCCACGACCCACACATCGCGAGCGGCA
GCGACCGCATCACCCCCGCCTCATCCCCCGGAGGACGGCTCCCGAAACGC
CAAGGGTGGTGGAAAGCCCGCATCGGCAAGAGAAGAGGGAGAACATTCCG
AGGAACATTCCGAGAACCAAGTGGAAAAACGTTCCGACCAAAAGAAGAGC
GGAGCCGGTGGTTCCGAGGAGCCACGGGTTTCTTCGGCTTCGAAGAAAAA
GAAAGGCAAGGGTCGAGCGGCGGGCGGCGGCGGCGGCGGGGTCAGCGGCC
ACGGTGACGGCGAAGCCAGGAGCGAAGGAATGGCGGGACGCGCGGACGCC
GCTCCCTCGGCCACCCCCGCCCCCCCTTCAGGGCGGACGCCGCCGTCTGG
CTCGAAGGATCTTTCGGCAAAGAAGCGGAAGAGAGGCTCGGCTGCCGCCG
CAGGCGACGGACGCGACGCTAGTTTTGAAGCAGCAGAGGCAGCAGCTCGA
GCGGGGACGGAAGCGCCGCAAGCCCCAAAGATGAAGGGAAAGGGGAAGGC
CAAGGGGCCCCGATCATCCCCGCCGTTATCTTCAGGAGGTGGAGCGGCGG
CGGCCCCGGCTGCTCCGACCGCGCCTTTGCTATTGGTTCTGGTGCGGCGG
CCGCTGGCGGGCGGGGAGGCAGCAGGGGCGTCCGCGTCAACAAGGCCGGC
GTCGAAATCAAGGCCGAGGAAGGAGGGGATGGCGGCGGTAGTCAGGTCGG
CGGTACGGAGGACGAAGACGAGGATGCGGGAGCGGGAGTGGCCCTCATCG
ATCTGCTGACGGCATCACCTCGATCAGGTATGGCTGCGGCGGCGGCGGCG
GCGGCGAAGCCGATGGACGACGAGGAGGTGGAGGAGGAGGAAGAGGAGGC
TGCCGGCGGCGGTGGCAAAGGGAACAGCGATAGCAAAGGAAACAGCAGCG
CCGCCAGCGTGTGGAGCGAGCTCTTCTCCGTTTCGGAGGCGGCCGACGCT
TCTTCCGCCGTGTTGTCGGCGGCGTCGGCGGCGCCAGGTACCTCCCCCGC
CCCCGCTCCCTCCGCCGTTGCCGGTGATGGCGCTGTTGGTGGGACTGGCA
CCGGGTTGTCGGGCGATGGTGGAGGGGGTGGGGGTCCCGCGACGGTGTTC
TTGTCAGGGGGGCTGGAATCGTGGCAGGTGAGAGCGGCAAAGCCAAGAGA
TGAGCTGTTGGAGATATGATTTGAGGGTAAGAGACTGTCTTGATGCCCGG
TCTCTCGTAAACGAGAGCAGGACGGGAGAATAGAGAGAGAGAGAGAGACG
GAGAGGGTTTGATTTTCTTCAAGGGTTCAGAAGTGCCGAGGCTCAGGTGG
TGAGAGCCATAAAATACGCCGAGCCAGCCCTGCGTGCAAGGCAGCGATCT
TTCCCTTAACGTCAAGAACGAGGAGTCGAGGAGAGCCGCATCTCTGGCTT
TCCTCTCGCTAGGGATGGTTTTCCTCTCGCTAGGGATGGCTTTTCTCTCG
CTAGGGATGGCTTTCCTCTCGCTAGGGATGGCTTTTCTCTCGTGGGAGTG
TGTGCGAGGGCCATGTATGCTGGACTCTAGCCTACGCCTTATTTGCACAG
GCTGGCGCACCAGTCGGGGTCACACAGGAAGGGCTCCTCTCCCTGAGGCC
CCCCAACCCGCCCTCCTGCGTTGCGTGCCTTCAATTTTTGATGCGAATCT
AGGTACGAGGCAAGATTCGAACCTGCGACTAAGCGCTACTAGGGGGTTGC
GAGGCTACCAACTAGACTTGAGGGTCATTTTTTTTTTTTTGCCGTCGAGG
CTGGTGCACCCGCCGACACTAATTCTTGGAACGAATTTAAAATAAGGTAC
TACAATGTACTGAACGCAATGCACGCCTCATCATCGACCTTATCTTCCGT
CTCCGCGCCAACCCCGGCGAACAACAAGGTGGCGTTTGTCCTGGAGGTGG
CGGACGGAGCCGTCCTGAAAGCGTGGTCCAAGACCCTCGGACAAAGCGTA
GCCGTGTTAGAAAGTGAGATGATGGTGTCTTAGCGGCCTCAAAAAGGCCA
ATGCGGAGATCGCGGCATTAAAATGTTACCACACTGCGGTCTAGTGGCAT
TGTCACGCGGTCGTATGACATGTGACAGGGAAAGGGGTACTGCTGTGAGA
GCGCGGCGAGCACGTCTTGGTGGTGGTGTTGTTGTTGCTGCTGCTGTCTT
GTCTTCTCACCCAAAATCGTTCTGATCTCTGGTTTATCCCCCATCCCCGA
CCTGCCTAGGGATATAGGGGATGCAGGGGTCAATCGCTCTTCTTTTTTCG
TCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAAAAAC
CTTCCCAGTCGTTCTGTCCAGTACCTCCTTCTGCCCCAATCACTCCGTAC
TAATTCAACACTTGATCCGGTCAATTCCCGTGGTCACAGGCTAACTTACC
TAACAAGGTATACTGAAATAAAATGGTCCCGAGGGGTCAGCAGAGAGGAG
AGAGCGATAGAAACACCAGAAATAGTCTAATAGTTTGGAGCCCTAAAAAC
GGAAAAATAGCAACAACGAAAAAAACGCCGCGCTTTTTTCCGGTCTTTGG
TCTTACCCTGTACCCCCGTTTCCTTCCTTTCCTTCTTGACTCCATCCATC
CATCCATCCAAGGTGCAGACGCTCCGGACAGCGCGCTTGAGCCAGGCTGG
CTGCTGCAGTCTCGCCTCCTCTCGTCGATCGCTAGAGTCGTGTCCGCGGC
GCCGGTAGCAGTCCAGCAGCTCTTCGATCTCGGTACGTATCAGACGCTAA
TCCTAACAGCCCTAACCCCAGCCCAACCCAACCGCCCTTCCTTGTTTTGT
TGTAGCGCTGCCGTATTATCGAATCATGCTCATCTTGTTGTTGTTGTTGT
TGTTGTCGTTGCCTTTGCCTGTTTGCACATCTTGGCGGGTTCGGAAGATT
CAGGAGATGGGAATTATTCCTTATTCCATCTTCCGTAAGATGTGTTTTGC
ACACGAGAGACCGTCCTGACCTCTACAGATGTTTTTGTTCCAGCCGCCAA
GCGTAGAGACTTCCATCCATATAACAAGTCAAATAGGCGGCATGTGTCAC
TTTAACCGTCACTGTCAAGACTTGAAAATAAAACCATCTGCAGGGGACTT
CTCAGATGGCAGTCTTCATGTGATGTTCTGTGTTTTTTCTTGAATAGAAA
CACACTCCCTTGTGACCAAGGTTTGTGCCCGCCTTCATCGGTAAAGGTGT
ATGGGCTAGCGTCCAGAATAAATGAGCCGGAAAAAAAAAGGAACAGAATA
AATGAGCCGAAAAAAAAAGGAACAGAAAAAGAGAACCTCAACAAGACGAA
GCGGGTTTCCACGACCGTCACCTTGCGTACAAGCAAGAGGGACTGTCAAC
TTTCGGTTTGTTTTGATGTTTCTTCCTTCTGTACTTTCGTTTTTTTTTGT
CCCCTTATGCCGTCCTTCAACATCTATTTTCGGCGATACACTTTCAATCA
GCCTGCGTCTGATGTTTTTTTATTTTTTATTGTCATCCCACCTATTCTGG
ACGCTATGCTATGCCTCTCTTGCATCTTTGAGTGATTGTAGGGTTAGGGT
TAGGGTTAGCCATGCACCGGGACAAAGTCTGTTTTTTGTTCTCAGGACGT
GCCTGCCGGGGTATCGGTACCGCTGTTCCCGTGCTTTTCCTCTGCACCGT
GTTATCTCTCTACAACTCCTCTTCTTACCCCATTGCACCTCTAGCCTGTG
TCTATTTCGATTATTGAACGAAGAGACTGATGTCCTGTTGCGAGCACGGT
GTCCTGTTGCGAGCATGGGCCAGCTTTTCAAGTTTACCCCGTTCAAATCC
AGCAGGCAACTGCTATTCGAGGGTCATCGTCGGATCTTTTCGGTTGCCTG
TTTCCAATCCTCTTCTGAAAAGACGAATGACTCTGCTCACCCGTTGATCT
TCCCCCGCTCCTTCAGGTGTACCCACATTGCTACGGCGTATCCTATCAGA
CTACGTGTGGTGCGGGGACCTGGACTGGTTTCCGTCGGCAGGCCCGGCGG
GCACAAACGGCCCCGACCGCAAGAATGCCTCCGCGTTGGTCGTATCGTCA
GACTCTCGTCCCCCCACGTCTACGCCAGCTTCTCCGCCCCCTGCCGTGCG
GGCGACAACGGGGGCGGCGGTCCTCGAGACGACGAAGAAGACCATAAGAG
ACCGGGCGATGAAGTGGGAGCCGAGGCCCCTGGCGCACGAGAGGCACGGC
GAGGAAAGGCTGCTGGCGGCCCTCGGCCTCGCGGCGGCGATGCTTCCCTC
TCCTTCCTCAATCAGCGCCGGCGGCGCGCCCGCCGGCTTTACAAGGGTGG
CGCCAGCAGAGGGCGTGGCCGCTTTTCTGCCGGCGGGGGCGGCGGCGGCG
GCAGCGGAGGACGGCGGTTCGACGGGATCGTCGCTCCAAGAAACGGGCAG
AGGGTGTGGCGATGGCAGTTCGAGAAGCGGTG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1061:34325..47906+

>mRNA_P-lacustris_contig1061.564.1 ID=mRNA_P-lacustris_contig1061.564.1|Name=mRNA_P-lacustris_contig1061.564.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1098bp|location=Sequence derived from alignment at P-lacustris_contig1061:34325..47906+ (Pleurocladia lacustris SAG_25_93)
ATGTCGAGCATTCAGCAACTCTTGCAAATCATGCAGATGTCGAGCATTCA
GCAACTCTTGCAAATCATGCAGGCTCGCCCGGGGGTGTCAGTGGACCAGC
AGATCGCCGTGCTGCACGAGCTCAACACGTCTCTCACCATGGCCTCGGGG
CACCCCAGCCAGAACAGGGTCGGGGGCGTCATCCAAACCCTCGTGCCCCT
GCTCTCTGGGGCTAACAACGAGGCTCGCCCGGGGGTGTCAGTGGACCAGC
AGATCGCCGTGCTGCACGAGCTCAACACGTCTCTCACCATGGCCTCGGGG
CACCCCAGCCAGAACAGGGTCGGGGGCGTCATCCAAACCCTCGTGCCCCT
GCTCTCTGGGGCTAACAACGAGGTGGTTTTGCTGGCAATCCGGGCGTTGA
TCACGTGCATCGACATCACTCCCAGGGCGGCGGGTAGCCTGGTGGAAAGC
GGCGCGGTCAAGCCCATGTGCAAGCGGCTGCTGCAGATCCAAGACATGGA
CGTTGCGGAGGCTTGCCTCAAGTGCCTGCACCTTCTGTCCAAGGTGGTTT
TGCTGGCAATCCGGGCGTTGATCACGTGCATCGACATCACTCCCAGGGCG
GCGGGTAGCCTGGTGGAAAGCGGCGCGGTCAAGCCCATGTGCAAGCGGCT
GCTGCAGATCCAAGACATGGACGTTGCGGAGGCTTGCCTCAAGTGCCTGC
ACCTTCTGTCCAAGGATAATCCTCGAGCAGTCCTCGAGGCAGGGGGCGCG
AAGGCCTGCCTGGCGTTCTTCGACTTCTTCCCGATGGACTTGCAGAAGAA
CGCGCTCGGGACCGTTTCGCGCCTCGTTGCCCCGGGAGTCTGTGGGAGGC
GGTCGGACGTCCGTCGGGCTCGAGAGGATAATCCTCGAGCAGTCCTCGAG
GCAGGGGGCGCGAAGGCCTGCCTGGCGTTCTTCGACTTCTTCCCGATGGA
CTTGCAGAAGAACGCGCTCGGGACCGTTTCGCGCCTCGTTGCCCCGGGAG
TCTGTGGGAGGCGGTCGGACGTCCGTCGGGCTCGAGAGATTCTCCTTTTT
TGCGAGAGTGCCTCATGAATTCTCCTTTTTTGCGAGAGTGCCTCATGA
back to top