mRNA_P-lacustris_contig106.552.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig106.552.1
Unique NamemRNA_P-lacustris_contig106.552.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig106.552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig106contigP-lacustris_contig106:229575..230221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size647
Cds size645
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815328.5460284-CDS-P-lacustris_contig106:229574..2302191622815328.5460284-CDS-P-lacustris_contig106:229574..230219Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig106 229575..230219 +
1693493479.4204757-CDS-P-lacustris_contig106:229574..2302191693493479.4204757-CDS-P-lacustris_contig106:229574..230219Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig106 229575..230219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig106.552.1prot_P-lacustris_contig106.552.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig106 229575..230219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig106.552.1

>prot_P-lacustris_contig106.552.1 ID=prot_P-lacustris_contig106.552.1|Name=mRNA_P-lacustris_contig106.552.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=215bp
TGVCVISCGRGIRPRDSIWLQSSCFQRWGQRTCALDWRKHCRLQDEAKTR
NEAAEATPRAVLAGERARFGGADLGGAGPGDAASSMAAFGTGRMSCASGR
AWTFGYVAGPRCGGTDRAQQAFHLERRWSITEQDAHRSLPTHRPNSSSLS
ARLMGIRLGRCVGPRQFGPLADDECICNAQRRKVLLSLRNRNLSSEVSCE
KRGDRACGNGGFWVC
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mRNA from alignment at P-lacustris_contig106:229575..230221+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig106.552.1 ID=mRNA_P-lacustris_contig106.552.1|Name=mRNA_P-lacustris_contig106.552.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=647bp|location=Sequence derived from alignment at P-lacustris_contig106:229575..230221+ (Pleurocladia lacustris SAG_25_93)
ACGGGCGTGTGTGTCATCAGCTGCGGCCGTGGTATAAGGCCTAGGGACAG
CATTTGGTTACAAAGTTCATGTTTTCAGAGGTGGGGGCAAAGAACCTGCG
CGCTCGATTGGAGGAAGCATTGCCGATTGCAGGATGAAGCGAAGACACGG
AACGAGGCGGCTGAAGCAACACCACGGGCAGTGTTGGCTGGTGAGCGCGC
TCGCTTTGGCGGTGCAGACCTCGGTGGCGCTGGTCCAGGTGACGCAGCTA
GTTCGATGGCTGCTTTTGGCACAGGTCGGATGAGTTGTGCAAGCGGTCGG
GCGTGGACCTTTGGTTACGTCGCCGGTCCACGGTGCGGCGGAACTGACCG
CGCGCAGCAGGCTTTCCATCTGGAGCGACGCTGGTCAATAACGGAACAGG
ACGCACACAGATCGCTCCCAACTCATCGACCTAATAGTTCATCTTTGTCA
GCGCGACTTATGGGCATACGACTGGGAAGGTGTGTGGGCCCAAGACAGTT
TGGGCCGTTGGCAGACGACGAGTGCATTTGCAACGCTCAACGCCGAAAAG
TTTTGCTCTCGCTTCGAAATAGAAATCTTTCATCAGAGGTTTCATGCGAA
AAGCGTGGAGACCGAGCGTGTGGCAACGGTGGGTTCTGGGTCTGCGA
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Coding sequence (CDS) from alignment at P-lacustris_contig106:229575..230221+

>mRNA_P-lacustris_contig106.552.1 ID=mRNA_P-lacustris_contig106.552.1|Name=mRNA_P-lacustris_contig106.552.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1290bp|location=Sequence derived from alignment at P-lacustris_contig106:229575..230221+ (Pleurocladia lacustris SAG_25_93)
ACGGGCGTGTGTGTCATCAGCTGCGGCCGTGGTATAAGGCCTAGGGACAG
CATTTGGTTACAAAGTTCATGTTTTCAGAGGTGGGGGCAAAGAACCTGCG
CGCTCGATTGGAGGAAGCATTGCCGATTGCAGGATGAAGCGAAGACACGG
AACGAGGCGGCTGAAGCAACACCACGGGCAGTGTTGGCTGGTGAGCGCGC
TCGCTTTGGCGGTGCAGACCTCGGTGGCGCTGGTCCAGGTGACGCAGCTA
GTTCGATGGCTGCTTTTGGCACAGGTCGGATGAGTTGTGCAAGCGGTCGG
GCGTGGACCTTTGGTTACGTCGCCGGTCCACGGTGCGGCGGAACTGACCG
CGCGCAGCAGGCTTTCCATCTGGAGCGACGCTGGTCAATAACGGAACAGG
ACGCACACAGATCGCTCCCAACTCATCGACCTAATAGTTCATCTTTGTCA
GCGCGACTTATGGGCATACGACTGGGAAGGTGTGTGGGCCCAAGACAGTT
TGGGCCGTTGGCAGACGACGAGTGCATTTGCAACGCTCAACGCCGAAAAG
TTTTGCTCTCGCTTCGAAATAGAAATCTTTCATCAGAGGTTTCATGCGAA
AAGCGTGGAGACCGAGCGTGTGGCAACGGTGGGTTCTGGGTCTGCACGGG
CGTGTGTGTCATCAGCTGCGGCCGTGGTATAAGGCCTAGGGACAGCATTT
GGTTACAAAGTTCATGTTTTCAGAGGTGGGGGCAAAGAACCTGCGCGCTC
GATTGGAGGAAGCATTGCCGATTGCAGGATGAAGCGAAGACACGGAACGA
GGCGGCTGAAGCAACACCACGGGCAGTGTTGGCTGGTGAGCGCGCTCGCT
TTGGCGGTGCAGACCTCGGTGGCGCTGGTCCAGGTGACGCAGCTAGTTCG
ATGGCTGCTTTTGGCACAGGTCGGATGAGTTGTGCAAGCGGTCGGGCGTG
GACCTTTGGTTACGTCGCCGGTCCACGGTGCGGCGGAACTGACCGCGCGC
AGCAGGCTTTCCATCTGGAGCGACGCTGGTCAATAACGGAACAGGACGCA
CACAGATCGCTCCCAACTCATCGACCTAATAGTTCATCTTTGTCAGCGCG
ACTTATGGGCATACGACTGGGAAGGTGTGTGGGCCCAAGACAGTTTGGGC
CGTTGGCAGACGACGAGTGCATTTGCAACGCTCAACGCCGAAAAGTTTTG
CTCTCGCTTCGAAATAGAAATCTTTCATCAGAGGTTTCATGCGAAAAGCG
TGGAGACCGAGCGTGTGGCAACGGTGGGTTCTGGGTCTGC
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