mRNA_P-lacustris_contig1059.536.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1059.536.1
Unique NamemRNA_P-lacustris_contig1059.536.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1059.536.1 vs. uniprot
Match: D8LCD7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCD7_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 3.870e-44
Identity = 93/138 (67.39%), Postives = 104/138 (75.36%), Query Frame = 1 
Query:    1 MKLFSTTTALLCLASAAEGFVFAPPLSKVGLVASAKQECSTPRMVMPGAASSMTT--------VLQSALVPLIAASG-TADPGTVDAPGWVLPLGAVAVILTAGLIPLLLKARMCCPGDDAARDMQERDEALWEQNKK 387
            MKLFSTTTA+LCLASAA+GFV APP S+  + A  +Q C+  RMV P  A+            VLQS++VPLIAA+G  A+PGTVDAPGWVLP GAVAVILTAGLIPLLLK     PGDDAARDMQERDE LWEQNKK
Sbjct:    1 MKLFSTTTAVLCLASAADGFVVAPPSSRASVAAPGRQ-CT--RMVSPLPAAXXXXXXXXXXXXVLQSSVVPLIAAAGGVAEPGTVDAPGWVLPAGAVAVILTAGLIPLLLK-----PGDDAARDMQERDEGLWEQNKK 130
[Close]
BLAST of mRNA_P-lacustris_contig1059.536.1 vs. uniprot
Match: A0A835YTE3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTE3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.140e-11
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:  220 GTVDAPGWVLPLGAVAVILTAGLIPLLLKARMCCPGDDAARDMQERDEALWE 375
            G+V APGWVLP+GA+ V+ TA LIP+LLK     PGDDAARDMQ+RD+ LW+
Sbjct:   65 GSVAAPGWVLPVGALVVVATA-LIPILLK-----PGDDAARDMQQRDKDLWD 110
[Close]
BLAST of mRNA_P-lacustris_contig1059.536.1 vs. uniprot
Match: A0A7R9UEM1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEM1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.610e-8
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:  169 LQSALVPLIAASGTADP-----GTVDAPGWVLPLGAVAVILTAGLIPLLLKARMCCPGDDAARDMQERDEALW 372
            L +A  PL+A +   D      GTV+APGWVLP+ A+  I     +P+LL+     PGDDAAR+MQERD + +
Sbjct:   27 LTAAAAPLVALAQEMDNDEIAYGTVEAPGWVLPVVALLTISLTAAVPILLQ-----PGDDAAREMQERDASFY 94
[Close]
BLAST of mRNA_P-lacustris_contig1059.536.1 vs. uniprot
Match: A0A7R9YFB9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFB9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.970e-8
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:  169 LQSALVPLIAASGTADP-----GTVDAPGWVLPLGAVAVILTAGLIPLLLKARMCCPGDDAARDMQERDEALW 372
            L +A  PL+A +   D      GTV+APGWVLP+ A+  I     +P+LL+     PGDDAAR+MQERD + +
Sbjct:   57 LTAAAAPLVALAQEMDNDEIAYGTVEAPGWVLPVVALLTISLTAAVPILLQ-----PGDDAAREMQERDASFY 124
[Close]
BLAST of mRNA_P-lacustris_contig1059.536.1 vs. uniprot
Match: A0A7S3REY2_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3REY2_EMIHU)

HSP 1 Score: 51.2 bits (121), Expect = 1.470e-5
Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:   76 LSKVGLVASAKQECSTPRMVMPGAASSMTTVLQSALVPLIAASGTADPGTVDAPGWVLPLGAVAVILTAGLIPLLLKARMCCPGDDAARDMQ 351
            +S   + A+A   C+ P  + P  AS++ +V  S +  ++ A G    G VDAP WVLP+GA+AV+ TA L+P+LL      PG++A    Q
Sbjct:   31 VSPARVSAAAASRCAAPTALAPVDASAVHSVA-SLVAEIVQADGERAYGAVDAPLWVLPVGAIAVVATA-LVPILLS-----PGEEAFNQQQ 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1059.536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LCD7_ECTSI3.870e-4467.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTE3_9STRA1.140e-1165.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9UEM1_9STRA2.610e-845.21Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9YFB9_9STRA4.970e-845.21Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3REY2_EMIHU1.470e-538.04Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1059contigP-lacustris_contig1059:47530..49486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_004590.1
Exons2
Model size390
Cds size390
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815328.3030272-CDS-P-lacustris_contig1059:47529..478501622815328.3030272-CDS-P-lacustris_contig1059:47529..47850Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1059 47530..47850 +
1693493479.3060963-CDS-P-lacustris_contig1059:47529..478501693493479.3060963-CDS-P-lacustris_contig1059:47529..47850Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1059 47530..47850 +
1622815328.3542938-CDS-P-lacustris_contig1059:49417..494861622815328.3542938-CDS-P-lacustris_contig1059:49417..49486Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1059 49418..49486 +
1693493479.3189957-CDS-P-lacustris_contig1059:49417..494861693493479.3189957-CDS-P-lacustris_contig1059:49417..49486Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1059 49418..49486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1059.536.1prot_P-lacustris_contig1059.536.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1059 47530..49486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1059.536.1

>prot_P-lacustris_contig1059.536.1 ID=prot_P-lacustris_contig1059.536.1|Name=mRNA_P-lacustris_contig1059.536.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=130bp
MKLFSTTTALLCLASAAEGFVFAPPLSKVGLVASAKQECSTPRMVMPGAA
SSMTTVLQSALVPLIAASGTADPGTVDAPGWVLPLGAVAVILTAGLIPLL
LKARMCCPGDDAARDMQERDEALWEQNKK*
back to top

mRNA from alignment at P-lacustris_contig1059:47530..49486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1059.536.1 ID=mRNA_P-lacustris_contig1059.536.1|Name=mRNA_P-lacustris_contig1059.536.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1957bp|location=Sequence derived from alignment at P-lacustris_contig1059:47530..49486+ (Pleurocladia lacustris SAG_25_93)
ATGAAGCTCTTCTCCACTACCACTGCTCTCCTCTGCCTCGCCTCGGCGGC
GGAAGGATTCGTCTTTGCACCTCCGTTGTCGAAGGTGGGGCTTGTTGCTT
CCGCCAAGCAGGAGTGCTCCACACCAAGAATGGTCATGCCAGGTGCTGCT
TCATCGATGACGACGGTCCTTCAGTCGGCTTTGGTGCCATTGATTGCCGC
TAGCGGGACTGCGGATCCGGGAACCGTCGATGCCCCCGGCTGGGTACTCC
CGTTGGGCGCAGTCGCAGTGATCCTGACTGCGGGACTGATTCCCCTTCTC
CTGAAGGCGCGTATGTGTTGCGTTGTAGTATGGTACACAGATCGTAACGG
AACATGTTTTCCCCACACAGACAGTGCTGAGTCAAGAGACAAAGTGGGGC
ATGCTTTCCAGCTGCGTTTCACAACTGCGTGTAACACCTGTGTGCTGATG
ACCGATACACTCGTGCGTGTATCCCTTTCTCGGTTTGTTCATCCCTGTCT
CTGTCCCTCTCTCTCTTAGTCTCGATATTTTTTCTCGCTTTTTACAAATA
GGCGAGGTAAGGTCGTACACAACAACAACAAGCCTTGGCCGTCGCGGCAA
TCGATCGGCCTACCTCCGGCAGCGCAGTCATCTTTGGTTCTCGTGTGCTT
TCCCACGATCTCCGTCCCCACTTGAGCCGCCACATTGCGGATTTCGGCCA
GTGAGGAGGCGCACTAGAACCAAAGATGACTGCGCTGCCGGAGGTAGGCC
GATCGATTGCCGCGACGGCCAAGGCTTGTTGTTGTTGTGCTTGCTTTACA
AACAGCAGCATTATTTTAGTTGCTCTCCGACAATTGCAGATAGGTCCGAC
CAAACGTCCACTCATCTTGTACTACTGTCATACTCGTACTACTGTCATAC
TCTTACTTGACATGACTACTCGTGATACAGAAATATCTATTCCGAAGCCT
TTAGGTTTTTGCTATATACTTCGTATCGATGATGGAGGACCTAAAATTCA
ACAAATCTTCGTTTCTGTTGTGCTACTTTTCTCCTACTTTCCTACTAAAC
GGGACTAGTTCGTTGGAGAGGGCACTTGGGTTGTTGTGTGTTGTGTATTC
TGTTTGCATTGGCGGTTTCCCGTCCTCTCGGCCGCAGCCCGTACCCCAGC
CCAATGTCGAAGACACAACCACTACACCACTTTGGTAACCAGCAGCGCAC
ACTTTCCCTCTAGAACCGAACCCCTCAACTAGAGACTCGCCTATCCCCCA
CTTGGAGTAATGTGGATACCATCCATTGTTAAGAAGGTTTTCGTGCGAAC
GCCACGTGTGGTCCCCAGCCCACCCTCCAGCGGCGGGGGGACGCAACCAA
AATGAAAAAATCGGGCTGTTATGAAAGATGGTGGTGTGGTGCCGTCTTTT
TTTGTATCCCCTGCTTCCATTTATAGCATGCTTCGCGGAGACACATCACC
CTTTCGCATCAGACGTCTCATGCTGGAGGTCGTGGCTGGATCATGACAGT
GTTTGTCTTGATGTCGCTTGTGACGACAAGATGTACACACGTCCGATCGG
ACTGCTGTGTCCTGATGCCTTTTCAGCGGTTAGACTATTGGCGCAGTTCA
TGCCACTTGGAAGAAGCACGCAACACGCGCAGACACAACCAAAGTAGAAC
CCTCGTTACTCCTACTTGTACTCACTTTACCTTAGCATCCCACACCGCCC
GGCCCTTATTTCACGACCCTTTACGGTATGCTAATGCAAAAAGTACAGCT
CTTCCGCAAACCGCCTGCAGGGGTTAAACGAGGTAATTTGAACGTGATGT
GAAGATGACACCCTCTCCGCCTTCCCCCAATTTCCTGCTTGTTGTGACTT
CTTTGTGTGGTGTGATGATGACGTAAACTTATTCACAGCCCGGAGACGAT
GCGGCGAGGGACATGCAGGAGAGAGACGAGGCTCTTTGGGAGCAAAACAA
AAAGTGA
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1059:47530..49486+

>mRNA_P-lacustris_contig1059.536.1 ID=mRNA_P-lacustris_contig1059.536.1|Name=mRNA_P-lacustris_contig1059.536.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=780bp|location=Sequence derived from alignment at P-lacustris_contig1059:47530..49486+ (Pleurocladia lacustris SAG_25_93)
ATGAAGCTCTTCTCCACTACCACTGCTCTCCTCTGCCTCGCCTCGGCGGC
GGAAGGATTCGTCTTTGCACCTCCGTTGTCGAAGGTGGGGCTTGTTGCTT
CCGCCAAGCAGGAGTGCTCCACACCAAGAATGGTCATGCCAGGTGCTGCT
TCATCGATGACGACGGTCCTTCAGTCGGCTTTGGTGCCATTGATTGCCGC
TAGCGGGACTGCGGATCCGGGAACCGTCGATGCCCCCGGCTGGGTACTCC
CGTTGGGCGCAGTCGCAGTGATCCTGACTGCGGGACTGATTCCCCTTCTC
CTGAAGGCGCGTATGTGTTGCATGAAGCTCTTCTCCACTACCACTGCTCT
CCTCTGCCTCGCCTCGGCGGCGGAAGGATTCGTCTTTGCACCTCCGTTGT
CGAAGGTGGGGCTTGTTGCTTCCGCCAAGCAGGAGTGCTCCACACCAAGA
ATGGTCATGCCAGGTGCTGCTTCATCGATGACGACGGTCCTTCAGTCGGC
TTTGGTGCCATTGATTGCCGCTAGCGGGACTGCGGATCCGGGAACCGTCG
ATGCCCCCGGCTGGGTACTCCCGTTGGGCGCAGTCGCAGTGATCCTGACT
GCGGGACTGATTCCCCTTCTCCTGAAGGCGCGTATGTGTTGCCCCGGAGA
CGATGCGGCGAGGGACATGCAGGAGAGAGACGAGGCTCTTTGGGAGCAAA
ACAAAAAGTGACCCGGAGACGATGCGGCGAGGGACATGCAGGAGAGAGAC
GAGGCTCTTTGGGAGCAAAACAAAAAGTGA
back to top