mRNA_P-lacustris_contig1058.532.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1058.532.1
Unique NamemRNA_P-lacustris_contig1058.532.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1058.532.1 vs. uniprot
Match: D8LBB8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBB8_ECTSI)

HSP 1 Score: 858 bits (2218), Expect = 9.220e-297
Identity = 425/529 (80.34%), Postives = 448/529 (84.69%), Query Frame = 1 
Query:  406 MTNFSLEADMRRAKERCPACARQQLEIENGQYVPGNEVKGQLHATPRSGGSSRRARAAAAASSPFSPLRGWTSGSQGGGNEAGGRVNNALAQHEVRPEEIICNHCMCSNENHEDTGPNGQRCCGGLREGPWDRVCELCKNSESCRRWAR-RACSAANAPAEQAD-APCS-NTSNDTASEKPCKIEGRGKFCTHCTCPCADVNPHKFENKSTWMSSNPEIQRACGICLACWAGWCIPVSGAKRKLVGATLEPEEPFARQWRPGRDADVFVLTGLFDELTGLLPENGFPYAVFGSSLRYFKGLIGRTEAKHAMREAGVTPGNRSGAIGEAWSGGGSMYPPERPAGARKVVAAPLRQGEGANRHFSRHHGRRDHNWQWDMLQSPWSLALMAKGRLALGVSEEEASEFEEAGIIAFPGHVVKHKDSVKNGGYGKTIGTLVLRSPESAFVCVQVQGERLGKAVAAAEELGVELPPRFAEKGRFKFAINELDAWAMVGGAARNDAEHAVVCGRKAIPAGEPGEGFVRVAFNMRWG 1983
            MTNFSL+ADMRRAK+RCPACARQQL IENGQYVPG+EVKGQL+ T                                G N       NALAQHE+RPEEI+C HC+CSNENHEDTGPNGQRCCGGLREG WDRVCELCK SESCR WAR RAC     PAE+A  AP   N + ++  EKPCK EGR  FC HCTCPCA V+PH FE+KS WMS+NPE+QRAC ICL CWAGWCIP+SG KRKLVGAT+EPEEPFARQWRPGRDADVFVLTGLFDELTGLLPENGFPYAVFGSSLRYFKGLIG  EAKHA++EAGVTPG+RSGAIGEAWSGGGSMYPPERPAGARKVVAAPLRQGEGANRHFSR HGRRDHNWQWDML+SPWSL LMAKGRLALGVSEEEA+EFEEAGIIAFPGHVVKHKDSVKNGGYGKTIGTLVLRSPESAFVCVQ QGERLG+AV  AEELGVELPPR AEKGRFKFAINELDAWAMVGG ARNDAEHAVVCGRK IPAGEPGEGFVRVAFNMRWG
Sbjct:    1 MTNFSLQADMRRAKDRCPACARQQLHIENGQYVPGDEVKGQLYTTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSN-----AYNALAQHEIRPEEIVCTHCLCSNENHEDTGPNGQRCCGGLREGLWDRVCELCKASESCRAWARARAC-----PAEEAGRAPGEPNHAGNSTGEKPCKTEGRANFCMHCTCPCAQVHPHTFEDKSNWMSTNPEVQRACRICLPCWAGWCIPLSGTKRKLVGATMEPEEPFARQWRPGRDADVFVLTGLFDELTGLLPENGFPYAVFGSSLRYFKGLIGSAEAKHALKEAGVTPGDRSGAIGEAWSGGGSMYPPERPAGARKVVAAPLRQGEGANRHFSRVHGRRDHNWQWDMLKSPWSLGLMAKGRLALGVSEEEANEFEEAGIIAFPGHVVKHKDSVKNGGYGKTIGTLVLRSPESAFVCVQGQGERLGRAVELAEELGVELPPRVAEKGRFKFAINELDAWAMVGGTARNDAEHAVVCGRKVIPAGEPGEGFVRVAFNMRWG 519
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1058.532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBB8_ECTSI9.220e-29780.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1058contigP-lacustris_contig1058:31143..38609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_004500.1
Exons6
Model size4564
Cds size1593
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1058.532.1prot_P-lacustris_contig1058.532.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1058 33709..37023 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815327.4907486-UTR-P-lacustris_contig1058:31142..337081622815327.4907486-UTR-P-lacustris_contig1058:31142..33708Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1058 31143..33708 -
1693493478.7541556-UTR-P-lacustris_contig1058:31142..337081693493478.7541556-UTR-P-lacustris_contig1058:31142..33708Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1058 31143..33708 -
1622815327.5578513-UTR-P-lacustris_contig1058:37023..371301622815327.5578513-UTR-P-lacustris_contig1058:37023..37130Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1058 37024..37130 -
1693493478.8072631-UTR-P-lacustris_contig1058:37023..371301693493478.8072631-UTR-P-lacustris_contig1058:37023..37130Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1058 37024..37130 -
1622815327.5684843-UTR-P-lacustris_contig1058:38069..382921622815327.5684843-UTR-P-lacustris_contig1058:38069..38292Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1058 38070..38292 -
1693493478.822004-UTR-P-lacustris_contig1058:38069..382921693493478.822004-UTR-P-lacustris_contig1058:38069..38292Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1058 38070..38292 -
1622815327.5793393-UTR-P-lacustris_contig1058:38534..386091622815327.5793393-UTR-P-lacustris_contig1058:38534..38609Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1058 38535..38609 -
1693493478.831862-UTR-P-lacustris_contig1058:38534..386091693493478.831862-UTR-P-lacustris_contig1058:38534..38609Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1058 38535..38609 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815327.5068226-CDS-P-lacustris_contig1058:33708..339661622815327.5068226-CDS-P-lacustris_contig1058:33708..33966Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1058 33709..33966 -
1693493478.7644465-CDS-P-lacustris_contig1058:33708..339661693493478.7644465-CDS-P-lacustris_contig1058:33708..33966Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1058 33709..33966 -
1622815327.5190904-CDS-P-lacustris_contig1058:34516..350611622815327.5190904-CDS-P-lacustris_contig1058:34516..35061Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1058 34517..35061 -
1693493478.7732766-CDS-P-lacustris_contig1058:34516..350611693493478.7732766-CDS-P-lacustris_contig1058:34516..35061Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1058 34517..35061 -
1622815327.5334275-CDS-P-lacustris_contig1058:35533..356881622815327.5334275-CDS-P-lacustris_contig1058:35533..35688Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1058 35534..35688 -
1693493478.781131-CDS-P-lacustris_contig1058:35533..356881693493478.781131-CDS-P-lacustris_contig1058:35533..35688Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1058 35534..35688 -
1622815327.5456257-CDS-P-lacustris_contig1058:36388..370231622815327.5456257-CDS-P-lacustris_contig1058:36388..37023Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1058 36389..37023 -
1693493478.7893245-CDS-P-lacustris_contig1058:36388..370231693493478.7893245-CDS-P-lacustris_contig1058:36388..37023Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1058 36389..37023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1058.532.1

>prot_P-lacustris_contig1058.532.1 ID=prot_P-lacustris_contig1058.532.1|Name=mRNA_P-lacustris_contig1058.532.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=531bp
MTNFSLEADMRRAKERCPACARQQLEIENGQYVPGNEVKGQLHATPRSGG
SSRRARAAAAASSPFSPLRGWTSGSQGGGNEAGGRVNNALAQHEVRPEEI
ICNHCMCSNENHEDTGPNGQRCCGGLREGPWDRVCELCKNSESCRRWARR
ACSAANAPAEQADAPCSNTSNDTASEKPCKIEGRGKFCTHCTCPCADVNP
HKFENKSTWMSSNPEIQRACGICLACWAGWCIPVSGAKRKLVGATLEPEE
PFARQWRPGRDADVFVLTGLFDELTGLLPENGFPYAVFGSSLRYFKGLIG
RTEAKHAMREAGVTPGNRSGAIGEAWSGGGSMYPPERPAGARKVVAAPLR
QGEGANRHFSRHHGRRDHNWQWDMLQSPWSLALMAKGRLALGVSEEEASE
FEEAGIIAFPGHVVKHKDSVKNGGYGKTIGTLVLRSPESAFVCVQVQGER
LGKAVAAAEELGVELPPRFAEKGRFKFAINELDAWAMVGGAARNDAEHAV
VCGRKAIPAGEPGEGFVRVAFNMRWGGKTT*
back to top

mRNA from alignment at P-lacustris_contig1058:31143..38609-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1058.532.1 ID=mRNA_P-lacustris_contig1058.532.1|Name=mRNA_P-lacustris_contig1058.532.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7467bp|location=Sequence derived from alignment at P-lacustris_contig1058:31143..38609- (Pleurocladia lacustris SAG_25_93)
GTCAGAAGTTAAACACACCCTCCTCGTAGAGGCATACCCGCCTCAGAGAG
AGACAGCACTCGCACAACTCCCAAGGTGCTGGGGGTAGTATGCTGGTGTG
ACCTGTTTGCGGGTGTGTGCAGGCGAGGGGACGCGCCTGCTGCTGCTGTG
GTATCTATATTATCGCTACTTGTAATTTTGTTGTACAACGTGATGAGATA
CAGAACTACGGCAATGTAGACAGACGCACGGCAGCGAAGATTTTCCACTC
ACTGCTGTTTTACTCGTCACTACAGACCCTAACCCCGTGGACATTGACAA
TTATTTCGAAACAACAGCATTCCTTGCGTTGGGGTCGGCGGGGACGCGCA
GTGAGGATTTGTTATCCTGAGGGTGCATACCAGCGATCTGCGGGGAGAAG
TGTGCCCAAGTGCGAAGGCACAGCCATAGGCCATCCACCAAGTTCTCCCA
GCCCTGTGTGGGTTGCTTGCCGAGCTCGATGTTTATCGCAACTGCGTAGT
GTGGGAGATTCGTTCCTGTGCGAGACCTCGGGACGAAAAGGTGGGCAAAC
ATGAGTAGCTTCAGATGGAACCCCCGCGTCGAAGACCTCACGAGCCAAAG
CTGTCGTAGTTGTTGAGGCAAAAGGATGATGAGAGTGAGTGAGGGACTGC
CTGCCTCGCCTTTGTCTCATCAGAATCGGTTTAGTCTTGGTACAAGCGAT
CCCGCCAATGGGGTATTGTAGCACACAAGCCCTGGGAAGGAAAACGAGAA
ATTTCAGCAGTGGCGAAAGATCCGTTTGACATGATCATGCTTTGAGGTTC
GCATCGTCCACACAGGTCTACTAGTTCACCGCGACGTCCTGATTCGCGAT
TACTAGTGATTCCAGCTTCATGGGGGCGAGTTGCAGCCCCCAATCCGAAC
GAAGAAAAGGTTTTAAGATTGGCTTTGAATTACTCCATTGCAACTTATTG
TCCTTTCCATTGTAGCACGTGTGTAGCCCAGTTCATAAGGGCCATGAAGA
CTTGACCTCATCCCCACCTTCCTCCCACTCGACGTGGGCAGTCTTTATTC
AGTTTACTCTTTGATAGAAACTAAAAACATAAAATAAATAGGGGTTACGC
TCAGTTACAGGAATTAACCGTACACATCTCACGACACGAGCTGACGACAG
CCATGCAACACCTGAAAATCCCAAAATTTATTACGTCTCCGGTAGACTAT
AGCGGGTTTGAGTTGGCAACTGTTTCACAGGTCTACCGCAGGGTAAAGCG
GTTGTGAGCTGTCATCTGTTTGTCAGCATAGGACGAGCGGTTTCGATGGT
GTAGAGAGCAAGCCTCAAATTCCCCCCGAGAGCGCGGTACGGCGGTAGGA
AGGTGTTCTTGCATGTTTGACGTGTTGGTGGTGTTCCCGAGTTTGGACTG
CTTTAACCGCCTCTTAATGTTTCATGTTTTTCGTGGACTGTACCGAACAC
CCCCGCTCTACCCCTCTCTTGCGCAGCAGCCTAGAGCATATTGCTTCCAC
GACCACACAGCAGCAGTGCGGCTGTGCGTTCAGGAGAAGCATTTTCGGCG
GCAAATCCGAAACAAGAACACACGACTGCTGTAATCATGACCAACTTCTC
GCTGGAGGCGGACATGCGGCGGGCCAAGGAACGGTGCCCCGCCTGTGCCA
GACAGCAACTTGAGATCGAGAACGGCCAATACGTCCCCGGCAACGAGGTG
AAAGGCCAGCTGCACGCCACACCGCGCAGCGGCGGGAGCAGCAGGCGCGC
GCGGGCGGCCGCCGCCGCCTCTTCTCCCTTTTCTCCGCTGAGAGGCTGGA
CGTCGGGCTCGCAAGGAGGGGGGAACGAGGCGGGCGGCCGTGTAAACAAC
GCACTGGCTCAGCACGAGGTCCGACCGGAGGAGATCATCTGCAACCACTG
CATGTGCTCGAACGAGAACCATGAAGACACAGGACCGAACGGTCAGAGGT
GCTGCGGGGGCTTGAGGGAGGGGCCGTGGGACCGTGTCTGCGAGCTGTGC
AAGAATTCGGAAAGCTGCAGAAGATGGGCCAGAAGGGCCTGCTCAGCCGC
CAACGCGCCGGCGGAACAGGCGGACGCGCCATGTTCCAATACCAGCAACG
ATACCGCGAGCGAGAAGCCGTGCAAGATCGAGGGGAGAGGAAAGTTCTGC
ACGCATTGCACATGCCCGTGTGCCGATGTCAACCCGCACAAGTTCGAAAA
TAAAAGCACCTGGATGTCGAGGTATGCGAAGTCACTGATGGTCATGCTCT
AACCTCTACCCCCGTGTAAGCTGTCTCGCAACGCTTGTGCTGTGCATGCC
GCCTGGTATCACATGGTCCCAGCATGCTGCGGGCGTTAACGGCCACCCTA
GAACCTTTTGGCTACCCTGAGTACTGTCGCACGGATGAAACAAAAATTGC
TCAGGTATTGGTGGCGAACGGTCGCGACGCTTGAAATATGCCGGCGGTCC
TGTTGAAGCACCACACATCGACAAAGAAGCTTGCATCCGCGTTTTATTTG
GATATTTTAAGCTCATTGTTCGGATGCTATCATTCATGTAGTTCTTTTCT
TTGTGCCACGCTCGTAGTGCCGTGTTCACAGCGCAGGCTTCCTCTCCCCG
GAGCCCCCGCCTTCCCGCCTTCCGTCTGCGATGCTCGTCATCCATTTTCT
CGCGAGAGGTTCGGCAGCCATCCTTTCCGATGTCAACGAGCTTGCCAGCA
GCTCATACTTTTAGCGCCCCTGTTCCAAGATTCCAACGCACCCCGTGTCC
GGCAGCGGACCCCACTAGCTCGATTTGTAACGCTTCTATGTCTACAAAAG
TAGCACCATCATCAACTCCTTCTTATGCCATCGATCAACGCCAAAATTTT
CCGTCCACCCATATCCCCAACAAACTTGTTTGCTGCTCAAAACGCGAACC
CATCGTGATGCGATTGTTCAGCAACCCCGAGATTCAACGAGCGTGCGGCA
TCTGCTTGGCATGCTGGGCGGGGTGGTGCATCCCCGTGTCCGGCGCCAAG
CGCAAGCTCGTGGGGGCGACCCTGGAGCCCGAGGAGCCGTTCGCGCGGCA
GTGGAGGCCTGGCCGCGACGCCGACGGTAAGGTGTTTTCTGCGCATGAAA
TAGTGCTGTTATATCGTCGCTGGCCTCGTTGACGGACGTTGTTCCTCAGA
TTTAGCATCAGAAACACACGACAGGCACAAGTACTTGCCAGAAGGAAACC
ACAAAGGTAGCACACGCACAAGCTCCGTCGGTACGCTATCCTAGCGTTGT
CGACTACCTCAGAGCCATGCATATGCCTTTTTTCCGTGCGCATCTGGTAC
ATCGCTGTCCCAGGGCTACAAATTGCTTTCTCTTCTTTTCCAGAGCTACC
GCTGGGGGCCACGCGAAATGAAATCCCCCTCCCGTAACCCTCTTCGCGCG
ATGCTTGTGTTCATTTTTTCGCATGAAAGCGCCGTCTTATCGTCATATCC
CAGATACCAGAAACTAGCACGCCCTCATCGACCATACTTGACCGTCCCTT
GACTCCCCCCCCCACCGCCCCCCGCTTCTGCCTCAAACCGAACCCAAGTC
TTCGTCCTGACGGGTCTCTTCGACGAACTCACTGGCCTCCTGCCCGAGAA
CGGCTTCCCGTATGCGGTGTTCGGCTCCTCCCTGCGCTACTTCAAGGGTC
TGATAGGGAGAACGGAGGCCAAGCACGCGATGCGGGAGGCCGGCGTCACC
CCCGGCAACCGCAGCGGGGCCATCGGAGAAGCGTGGAGTGGGGGCGGCTC
CATGTACCCGCCGGAGCGGCCCGCCGGGGCGCGGAAGGTGGTGGCGGCGC
CGCTGCGCCAGGGGGAGGGCGCGAACCGCCACTTCTCCAGGCACCATGGG
AGGCGAGACCACAACTGGCAGTGGGACATGCTCCAGAGCCCGTGGTCGTT
GGCGCTGATGGCGAAGGGCAGGCTCGCTCTCGGGGTATCGGAGGAGGAGG
CGAGCGAGTTCGAGGAAGCCGGGATCATCGCGTTCCCCGGTCACGTCGTG
AAGCACAAGGACTCGGTCAAGAACGGCGGGTACGGGAAGACGATCGGGAC
GCTGGTGCTGAGGTCTCCAGAGTCGGCCTTCGTTTGCGTGCAGGTGTGAG
AAAGATCTAGTCCGGGAGTTCAGGGGAAGCTCGAAAACTCAGGAAGTCGG
ACTTGCCGGTGAACACGGCGACGGCGATAACATTACCGCCCGATTTAAGT
GTCGGTGAGGACAAAAAGGCGAACCAAAGCAGTATGTGGTGCATGCACAC
GCGCAAGAACTAGTGGTTGATACGAGGGAAGCGAGGTGGTTAAAAGCTGT
GCCGTAGTCTCACCAGGAAGGAGCATAGCGCATACGAGGGCGACAGTTGG
CGTGGTCTGACTCTCGCCACCTTTGCTCGAAATCGCCCCTGGGCGTGGGG
TGGTAGGTAAGAGGGGGGGAGTACAACAACTCCTCGCCTTCCAGGATTGA
ACGAGGTTCGAACCGAGTTGTAACGGTCATCGTAAACAACGTACGCACTC
AGGAGGTTGGCTACACAGCCCGGACTATGGCCTGCAGATAAAATAGGGGC
ATCCAGCGCCAGCCCCATCCACATAAAAATAATTGGCTCCACCAACCCCC
CCACACGCACACACTTTTGTCGCCATCGCACGAACAACTCCAGGTGCAAG
GGGAGCGACTGGGCAAGGCCGTCGCGGCGGCGGAGGAGCTCGGCGTGGAG
CTACCGCCCAGGTTCGCCGAGAAGGGGCGATTCAAGTTTGCCATCAACGA
GCTGGACGCCTGGGCGATGGTCGGCGGGGCTGCGAGGAACGACGCGGAGC
ACGCGGTGGTGTGTGGGAGAAAGGCCATCCCGGCCGGGGAGCCCGGGGAG
GGGTTCGTCCGGGTGGCGTTCAACATGAGGTGGGGTGGCAAGACGACCTG
AGGGTGTGAGACGGGTGAGAAGGATGTGAAAGGATTGCGACGTCCTCGCG
AGGACCGGCCGGCGGTGATGGGGTACAGCCATGTGCGTAGTTGCGTTCGA
TAATGGGGAAGAGCGGGAGGGCGGGCAGTAGGCATGGGTCGGGTGTGAAA
ACAGTCGTCGAAGGGTGTGAAGTGGCGAGGCGGTGGTCCTGTCCTGGTCA
AGATATACGAAACTGGTTTATGTGTTGGAGGTGGGCTACTTCCCAGAGCG
GGGCTGTCCAAGGAACTGTTCGTGTCGAATCTGGAGTTTGGATTGGGTGT
TGTGAAGACACGGCGATATTGTGTGTCGAAGCTCGTTAGGGTAATTGGGA
AATCAAGAGTACCCCCCCCAACAGATGAATTAGGTTGAACATCAAGTTGC
TCGCCTCTCTTCTGAGGCAGCCCCGGAAGCGATGTGATGGGCGAATGTGT
CGGGACGTTCGTGACTTTGAGCCAAAGATTGGCTTGTGCGGGGGCTTTGT
GAGGAATTTCATCGCAGAAGGTCCGGCAGTACACACCCAAGTAGTAAGAG
TACTTCAGCATTTGAAAACCAAAACAGGTGGGATTTTCTGCAGGGGCGTT
GCGTCTTCAGGGAGGGGCGGTATCGAGTCCGTCCTTCTACCCTACGGCTG
TGTGATGGATTAAGAGCGAGCGTGGAAAACGCGTTTGCTCTCTTCGCGTC
GCGCCCGAAACGAGATGGGTAAGGGATACTTTTGAGCGGGAGATACATAT
ATCTGGTATGTACCCTGTTGTACCGATACTCCGTCCTTTCCCTGGGGAGT
TGACGGAGCGTTGCCAATGCTTGAACGGAGAAGCTTGCCCTGTGCAGTCT
CTGCTAGTCGAGCATCCATGCACTCCTCCCCAAACGGGTGCGACTCGACT
ATCGGTGTTGACCTTCTTTTCAACGTGCTCGTCTTGTAGTGTATGTTACG
TTTCGACGGAAAAGCTACTACCTGCCCTCTGGGATCCCTCCTTAGCCGGG
AAGGGCGTCGCGAAATGCAGGACATATTGTTGTTCGGGTGCATTGCGTGT
TTGCTGTTCGGTGGTATCCTTGTTTTTCGGGTGTTTCCTTTGTAAAGTTG
TGCTGCTGTATTGCCCTCGGTTTAGTCGAAGGCGTGCGACGAAGCTCTCG
CTGGCTGCTGTTCTCTGTCCAGGCGTGGATTGCGTTATGTGAGAGTACCC
CACACGTGGTTGTCCCTTTTGGGAACTATATGGCCCCATCGTGGTTAAGG
ACGGTGGATCGGTGTTGTATTTCTTCTTGTTCTGGGGTGATCGTGCTTTC
TCTTGTGCTGGGCTTGTTTTGTGGAAACGGGCCAGATTTCGTTTTTGAGA
AATGGCGGTGAAAGAAACAAGCAACAAGCGGAACGTGTACTTTGGTGGTA
AAGAACAAAGTTGACTTTTCGTGGGATGGGAATGGGTTTGAAGTGGTTGA
TTGTTTGATTGTTTTTCTTGGAGTGCTTCGTAAGGCGTGAGCCATACGTG
ACCACGGGGAACTTTCCACCGTTGTTGTTTGCTGTTCTGGACTGACTCCT
AGCTTTGCTATAATGCTAATAGCTTTGCTACAAGTTTCTTTTGCAAGCAA
GGGTACGTGGGAAAGCGCAGACTAGACACACAGGGGGAACAATCATCCCG
GTTGCATGTCTGTGTGCATTTGCAACGAACCGGACGGATGGGCGTTCGGT
TTGACGTTTGTTGCGTGCTTCTTCCTTGGCTTGCCACTCCCGTGATTTGC
CTACATGTATATCTCTATGACTTTGCCGGGGATATTTTGATAGATAGGTC
TTATTTCCGGAAGAGGGCGTTGGTACGGAAACCAGTGCGTATGTGGGAGG
GAGAAGACGGAACACGCGTTGTTGGCTGTGGGTTGGATTTTTTATGTATC
TTCGTCTGCCATTGTCCTCGTGTTTTTTCTTGGACAGGTCGGGAGGTGAG
TGGGTGGAGGTCGACCGAAGTCTGCCATCTTGTGGCGACGAGAGGGAAAG
AGTTCCAATACCATCGCAGATATAGGCGGGTGAGTATGTGCTAAGTGCAG
GGGGCTTGTCCTTTCTAGTGCCTGGGGGTACAAGACGCGATCATCAGTCG
CCTGGAGGGAGATTGATATTGGTTGGTGAAGGTGGAATCTACTTAGTTCG
AGACCAGATGGTAACATCTGCTTGGACACGACCATGTAAACGTGTTAGGT
TTATTCGCAAGAGTTACTTGTGGTAAATCTATATCGCATCGGTTGGTTGC
ATTTGTGGTCATTGTTTGCCTCAAGGGCGAGAGGTTCGCTTTTGGGAGGG
GGAGGTAGGGTGACGTACGACATGCCAAGAATGCGCACACACGATCCCGA
CTGATCGACTGATCCCCGAACGCGACGGGCATGATGAAACACGTATTAGC
GTCTCACATGCCAATGCTAAAGCTGGTGCTGGGTGCTGTGTTCGACTTCT
ATGCTTGCCGCCGAAGCGACGTCGGTAAATAGGACGAACAATATGATTGA
AGAGAACAAGGCAGGACTGCTTTATTGCAAGCACTGCACTAACAACGAGC
AGTGACCACCACGGACG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1058:31143..38609-

>mRNA_P-lacustris_contig1058.532.1 ID=mRNA_P-lacustris_contig1058.532.1|Name=mRNA_P-lacustris_contig1058.532.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3186bp|location=Sequence derived from alignment at P-lacustris_contig1058:31143..38609- (Pleurocladia lacustris SAG_25_93)
ATGACCAACTTCTCGCTGGAGGCGGACATGCGGCGGGCCAAGGAACGGTG
CCCCGCCTGTGCCAGACAGCAACTTGAGATCGAGAACGGCCAATACGTCC
CCGGCAACGAGGTGAAAGGCCAGCTGCACGCCACACCGCGCAGCGGCGGG
AGCAGCAGGCGCGCGCGGGCGGCCGCCGCCGCCTCTTCTCCCTTTTCTCC
GCTGAGAGGCTGGACGTCGGGCTCGCAAGGAGGGGGGAACGAGGCGGGCG
GCCGTGTAAACAACGCACTGGCTCAGCACGAGGTCCGACCGGAGGAGATC
ATCTGCAACCACTGCATGTGCTCGAACGAGAACCATGAAGACACAGGACC
GAACGGTCAGAGGTGCTGCGGGGGCTTGAGGGAGGGGCCGTGGGACCGTG
TCTGCGAGCTGTGCAAGAATTCGGAAAGCTGCAGAAGATGGGCCAGAAGG
GCCTGCTCAGCCGCCAACGCGCCGGCGGAACAGGCGGACGCGCCATGTTC
CAATACCAGCAACGATACCGCGAGCGAGAAGCCGTGCAAGATCGAGGGGA
GAGGAAAGTTCTGCACGCATTGCACATGCCCGTGTGCCGATGTCAACCCG
CACAAGTTCGAAAATAAAAGCACCTGGATGTCGAGATGACCAACTTCTCG
CTGGAGGCGGACATGCGGCGGGCCAAGGAACGGTGCCCCGCCTGTGCCAG
ACAGCAACTTGAGATCGAGAACGGCCAATACGTCCCCGGCAACGAGGTGA
AAGGCCAGCTGCACGCCACACCGCGCAGCGGCGGGAGCAGCAGGCGCGCG
CGGGCGGCCGCCGCCGCCTCTTCTCCCTTTTCTCCGCTGAGAGGCTGGAC
GTCGGGCTCGCAAGGAGGGGGGAACGAGGCGGGCGGCCGTGTAAACAACG
CACTGGCTCAGCACGAGGTCCGACCGGAGGAGATCATCTGCAACCACTGC
ATGTGCTCGAACGAGAACCATGAAGACACAGGACCGAACGGTCAGAGGTG
CTGCGGGGGCTTGAGGGAGGGGCCGTGGGACCGTGTCTGCGAGCTGTGCA
AGAATTCGGAAAGCTGCAGAAGATGGGCCAGAAGGGCCTGCTCAGCCGCC
AACGCGCCGGCGGAACAGGCGGACGCGCCATGTTCCAATACCAGCAACGA
TACCGCGAGCGAGAAGCCGTGCAAGATCGAGGGGAGAGGAAAGTTCTGCA
CGCATTGCACATGCCCGTGTGCCGATGTCAACCCGCACAAGTTCGAAAAT
AAAAGCACCTGGATGTCGAGCAACCCCGAGATTCAACGAGCGTGCGGCAT
CTGCTTGGCATGCTGGGCGGGGTGGTGCATCCCCGTGTCCGGCGCCAAGC
GCAAGCTCGTGGGGGCGACCCTGGAGCCCGAGGAGCCGTTCGCGCGGCAG
TGGAGGCCTGGCCGCGACGCCGACGCAACCCCGAGATTCAACGAGCGTGC
GGCATCTGCTTGGCATGCTGGGCGGGGTGGTGCATCCCCGTGTCCGGCGC
CAAGCGCAAGCTCGTGGGGGCGACCCTGGAGCCCGAGGAGCCGTTCGCGC
GGCAGTGGAGGCCTGGCCGCGACGCCGACGTCTTCGTCCTGACGGGTCTC
TTCGACGAACTCACTGGCCTCCTGCCCGAGAACGGCTTCCCGTATGCGGT
GTTCGGCTCCTCCCTGCGCTACTTCAAGGGTCTGATAGGGAGAACGGAGG
CCAAGCACGCGATGCGGGAGGCCGGCGTCACCCCCGGCAACCGCAGCGGG
GCCATCGGAGAAGCGTGGAGTGGGGGCGGCTCCATGTACCCGCCGGAGCG
GCCCGCCGGGGCGCGGAAGGTGGTGGCGGCGCCGCTGCGCCAGGGGGAGG
GCGCGAACCGCCACTTCTCCAGGCACCATGGGAGGCGAGACCACAACTGG
CAGTGGGACATGCTCCAGAGCCCGTGGTCGTTGGCGCTGATGGCGAAGGG
CAGGCTCGCTCTCGGGGTATCGGAGGAGGAGGCGAGCGAGTTCGAGGAAG
CCGGGATCATCGCGTTCCCCGGTCACGTCGTGAAGCACAAGGACTCGGTC
AAGAACGGCGGGTACGGGAAGACGATCGGGACGCTGGTGCTGAGGTCTCC
AGAGTCGGCCTTCGTTTGCGTGCAGTCTTCGTCCTGACGGGTCTCTTCGA
CGAACTCACTGGCCTCCTGCCCGAGAACGGCTTCCCGTATGCGGTGTTCG
GCTCCTCCCTGCGCTACTTCAAGGGTCTGATAGGGAGAACGGAGGCCAAG
CACGCGATGCGGGAGGCCGGCGTCACCCCCGGCAACCGCAGCGGGGCCAT
CGGAGAAGCGTGGAGTGGGGGCGGCTCCATGTACCCGCCGGAGCGGCCCG
CCGGGGCGCGGAAGGTGGTGGCGGCGCCGCTGCGCCAGGGGGAGGGCGCG
AACCGCCACTTCTCCAGGCACCATGGGAGGCGAGACCACAACTGGCAGTG
GGACATGCTCCAGAGCCCGTGGTCGTTGGCGCTGATGGCGAAGGGCAGGC
TCGCTCTCGGGGTATCGGAGGAGGAGGCGAGCGAGTTCGAGGAAGCCGGG
ATCATCGCGTTCCCCGGTCACGTCGTGAAGCACAAGGACTCGGTCAAGAA
CGGCGGGTACGGGAAGACGATCGGGACGCTGGTGCTGAGGTCTCCAGAGT
CGGCCTTCGTTTGCGTGCAGGTGCAAGGGGAGCGACTGGGCAAGGCCGTC
GCGGCGGCGGAGGAGCTCGGCGTGGAGCTACCGCCCAGGTTCGCCGAGAA
GGGGCGATTCAAGTTTGCCATCAACGAGCTGGACGCCTGGGCGATGGTCG
GCGGGGCTGCGAGGAACGACGCGGAGCACGCGGTGGTGTGTGGGAGAAAG
GCCATCCCGGCCGGGGAGCCCGGGGAGGGGTTCGTCCGGGTGGCGTTCAA
CATGAGGTGGGGTGGCAAGACGACCTGAGTGCAAGGGGAGCGACTGGGCA
AGGCCGTCGCGGCGGCGGAGGAGCTCGGCGTGGAGCTACCGCCCAGGTTC
GCCGAGAAGGGGCGATTCAAGTTTGCCATCAACGAGCTGGACGCCTGGGC
GATGGTCGGCGGGGCTGCGAGGAACGACGCGGAGCACGCGGTGGTGTGTG
GGAGAAAGGCCATCCCGGCCGGGGAGCCCGGGGAGGGGTTCGTCCGGGTG
GCGTTCAACATGAGGTGGGGTGGCAAGACGACCTGA
back to top