mRNA_P-lacustris_contig1058.531.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1058.531.1
Unique NamemRNA_P-lacustris_contig1058.531.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1058.531.1 vs. uniprot
Match: A0A6H5KFH9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFH9_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.500e-13
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:    1 SIIRQCTSGKEALQELDKVYSPDTQGAKQELFRRFNSFSFA--AKDDPIQALNDLELIWSQLNTKDGVELDLSFLLKKFIDILPTPEYEAAQNSLLAMKEPNRNDVVRLVTT 330
            +I+  CTS KE L EL+KVY P++QG+KQ L R+   F+    +  +PI+ L  LEL++++L  K G+  +  F+L  F+  LP PEY+ A+  L      +R ++VR+V+T
Sbjct:   91 AIVSNCTSAKEVLAELEKVYDPESQGSKQALMRKMFDFAIPTHSNSNPIEHLYSLELLYARLREK-GLNAEQPFVLAHFVGSLP-PEYQQAKFLLETATALDRAEIVRIVST 200
[Close]
BLAST of mRNA_P-lacustris_contig1058.531.1 vs. uniprot
Match: A0A6H5K9V8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9V8_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 7.000e-13
Identity = 71/181 (39.23%), Postives = 101/181 (55.80%), Query Frame = 1 
Query:   31 EALQELDKVYSPDTQGAKQELFRRFNSFSFAAKDDPIQALNDLELIWSQLNTKDGVELDLSFLLKKFIDILPTPEYEAAQNSLLAMKEPNRNDVVRLVTTQREKINRLREEENVPTQRKGQEQAYMAS--AGRXXXXXXXXXXXXXXXXXXXTKXXXXXXXRKG--RCFICHRRGHYADDC 561
            +A++ LD VY P+TQG  Q+LF RF  +      DP  AL +LE I   +    G  LD  F+  +F++ LP  EYE A+ +L + ++  R D++R+  T+   +   RE E   T  +  EQA+  +  AG+      XXXXXXXXXXXXX  XXXX   ++   RCF C +RGH   +C
Sbjct:   18 DAMETLDAVYKPETQGEAQQLFHRFERYQVDVMVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQ-EYEVAKENLSSAEKLTRGDLMRVTGTRYNTLCSQREAEKSHT--RAAEQAFFTADGAGKDESRNRXXXXXXXXXXXXXXXXXXXGAEKRACVRCFRCGKRGHRIAEC 195
[Close]
BLAST of mRNA_P-lacustris_contig1058.531.1 vs. uniprot
Match: A0A6H5KJL1_9PHAE (CCHC-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 7.670e-13
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:    1 SIIRQCTSGKEALQELDKVYSPDTQGAKQELFRRFNSFSFA--AKDDPIQALNDLELIWSQLNTKDGVELDLSFLLKKFIDILPTPEYEAAQNSLLAMKEPNRNDVVRLVTT 330
            +II  CTS KE L EL+KVY P++QG+KQ L R+   F+    +  +PI+ L  LEL++++L  K G+  +  F+L  F+  LP PEY+ A+  L      +R ++VR+V+T
Sbjct:  248 AIISNCTSAKEVLAELEKVYDPESQGSKQALMRKMFDFAIPTHSNSNPIEHLYSLELLYARLREK-GLNAEQPFVLAHFVGSLP-PEYQQAKFLLETATALDRAEIVRIVST 357
[Close]
BLAST of mRNA_P-lacustris_contig1058.531.1 vs. uniprot
Match: A0A6H5JMS9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 7.730e-13
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:    1 SIIRQCTSGKEALQELDKVYSPDTQGAKQELFRRFNSFSFA--AKDDPIQALNDLELIWSQLNTKDGVELDLSFLLKKFIDILPTPEYEAAQNSLLAMKEPNRNDVVRLVTT 330
            +II  CTS KE L EL+KVY P++QG+KQ L R+   F+    +  +PI+ L  LEL++++L  K G+  +  F+L  F+  LP PEY+ A+  L      +R ++VR+V+T
Sbjct:   91 AIISNCTSAKEVLAELEKVYDPESQGSKQALMRKMFDFAIPTHSNSNPIEHLYSLELLYARLREK-GLNAEQPFVLAHFVGSLP-PEYQQAKFLLETATALDRAEIVRIVST 200
[Close]
BLAST of mRNA_P-lacustris_contig1058.531.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 9.400e-13
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:    1 SIIRQCTSGKEALQELDKVYSPDTQGAKQELFRRFNSFSFA--AKDDPIQALNDLELIWSQLNTKDGVELDLSFLLKKFIDILPTPEYEAAQNSLLAMKEPNRNDVVRLVTT 330
            +II  CTS KE L EL+KVY P++QG+KQ L R+   F+    +  +PI+ L  LEL++++L  K G+  +  F+L  F+  LP PEY+ A+  L      +R ++VR+V+T
Sbjct:  247 AIISNCTSAKEVLAELEKVYDPESQGSKQALMRKMFDFAIPTHSNSNPIEHLYSLELLYARLREK-GLNAEQPFVLAHFVGSLP-PEYQQAKFLLETATALDRAEIVRIVST 356
[Close]
BLAST of mRNA_P-lacustris_contig1058.531.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 9.780e-13
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:    1 SIIRQCTSGKEALQELDKVYSPDTQGAKQELFRRFNSFSFA--AKDDPIQALNDLELIWSQLNTKDGVELDLSFLLKKFIDILPTPEYEAAQNSLLAMKEPNRNDVVRLVTT 330
            +II  CTS KE L EL+KVY P++QG+KQ L R+   F+    +  +PI+ L  LEL++++L  K G+  +  F+L  F+  LP PEY+ A+  L      +R ++VR+V+T
Sbjct:   91 AIISNCTSAKEVLAELEKVYDPESQGSKQALMRKMFDFAIPTHSNSNPIEHLYSLELLYARLREK-GLNAEQPFVLAHFVGSLP-PEYQQAKFLLETATALDRAEIVRIVST 200
[Close]
BLAST of mRNA_P-lacustris_contig1058.531.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 9.800e-13
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:    1 SIIRQCTSGKEALQELDKVYSPDTQGAKQELFRRFNSFSFA--AKDDPIQALNDLELIWSQLNTKDGVELDLSFLLKKFIDILPTPEYEAAQNSLLAMKEPNRNDVVRLVTT 330
            +II  CTS KE L EL+KVY P++QG+KQ L R+   F+    +  +PI+ L  LEL++++L  K G+  +  F+L  F+  LP PEY+ A+  L      +R ++VR+V+T
Sbjct:   91 AIISNCTSAKEVLAELEKVYDPESQGSKQALMRKMFDFAIPTHSNSNPIEHLYSLELLYARLREK-GLNAEQPFVLAHFVGSLP-PEYQQAKFLLETATALDRAEIVRIVST 200
[Close]
BLAST of mRNA_P-lacustris_contig1058.531.1 vs. uniprot
Match: A0A6H5JJI8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 9.850e-13
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:    1 SIIRQCTSGKEALQELDKVYSPDTQGAKQELFRRFNSFSFA--AKDDPIQALNDLELIWSQLNTKDGVELDLSFLLKKFIDILPTPEYEAAQNSLLAMKEPNRNDVVRLVTT 330
            +II  CTS KE L EL+KVY P++QG+KQ L R+   F+    +  +PI+ L  LEL++++L  K G+  +  F+L  F+  LP PEY+ A+  L      +R ++VR+V+T
Sbjct:  159 AIISNCTSAKEVLAELEKVYDPESQGSKQALMRKMFDFAIPTHSNSNPIEHLYSLELLYARLREK-GLNAEQPFVLAHFVGSLP-PEYQQAKFLLETATALDRAEIVRIVST 268
[Close]
BLAST of mRNA_P-lacustris_contig1058.531.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.000e-12
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:    1 SIIRQCTSGKEALQELDKVYSPDTQGAKQELFRRFNSFSFA--AKDDPIQALNDLELIWSQLNTKDGVELDLSFLLKKFIDILPTPEYEAAQNSLLAMKEPNRNDVVRLVTT 330
            +II  CTS KE L EL+KVY P++QG+KQ L R+   F+    +  +PI+ L  LEL++++L  K G+  +  F+L  F+  LP PEY+ A+  L      +R ++VR+V+T
Sbjct:   91 AIISNCTSAKEVLAELEKVYDPESQGSKQALMRKMFDFAIPTHSNSNPIEHLYSLELLYARLREK-GLNAEQPFVLAHFVGSLP-PEYQQAKFLLETATALDRAEIVRIVST 200
[Close]
BLAST of mRNA_P-lacustris_contig1058.531.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.320e-12
Identity = 44/112 (39.29%), Postives = 69/112 (61.61%), Query Frame = 1 
Query:    1 SIIRQCTSGKEALQELDKVYSPDTQGAKQELFRRFNSFSFA--AKDDPIQALNDLELIWSQLNTKDGVELDLSFLLKKFIDILPTPEYEAAQNSLLAMKEPNRNDVVRLVTT 330
            +I+  CTS KE L EL KVY P++QG+KQ L R+   F+    +  +PI+ L  LEL++++L  K G+  +  F+L  F+  LP PEY+ A+  L      +R ++VR+V+T
Sbjct:   96 AIVSNCTSAKEVLAELGKVYDPESQGSKQALMRKMFDFAIPTHSNSNPIEHLYSLELLYARLREK-GLNAEQPFVLAHFVGSLP-PEYQQAKFLLETATALDRAEIVRIVST 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1058.531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KFH9_9PHAE1.500e-1339.29Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K9V8_9PHAE7.000e-1339.23CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJL1_9PHAE7.670e-1340.18CCHC-type domain-containing protein n=3 Tax=Ectoca... [more]
A0A6H5JMS9_9PHAE7.730e-1340.18CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L3E0_9PHAE9.400e-1340.18Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JQW4_9PHAE9.780e-1340.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L060_9PHAE9.800e-1340.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJI8_9PHAE9.850e-1340.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.000e-1240.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE3.320e-1239.29Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1058contigP-lacustris_contig1058:27576..28151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size576
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815327.3863337-CDS-P-lacustris_contig1058:27575..281511622815327.3863337-CDS-P-lacustris_contig1058:27575..28151Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1058 27576..28151 -
1693493478.7094753-CDS-P-lacustris_contig1058:27575..281511693493478.7094753-CDS-P-lacustris_contig1058:27575..28151Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1058 27576..28151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1058.531.1prot_P-lacustris_contig1058.531.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1058 27576..28151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1058.531.1

>prot_P-lacustris_contig1058.531.1 ID=prot_P-lacustris_contig1058.531.1|Name=mRNA_P-lacustris_contig1058.531.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=192bp
SIIRQCTSGKEALQELDKVYSPDTQGAKQELFRRFNSFSFAAKDDPIQAL
NDLELIWSQLNTKDGVELDLSFLLKKFIDILPTPEYEAAQNSLLAMKEPN
RNDVVRLVTTQREKINRLREEENVPTQRKGQEQAYMASAGRGKRGRGRGG
GGGGGGNGGGTKGGGGGSGRKGRCFICHRRGHYADDCTFPND
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mRNA from alignment at P-lacustris_contig1058:27576..28151-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1058.531.1 ID=mRNA_P-lacustris_contig1058.531.1|Name=mRNA_P-lacustris_contig1058.531.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=576bp|location=Sequence derived from alignment at P-lacustris_contig1058:27576..28151- (Pleurocladia lacustris SAG_25_93)
TCTATCATCAGACAGTGCACCAGTGGCAAGGAAGCTTTGCAGGAGTTGGA
TAAAGTGTACAGTCCTGACACTCAAGGGGCCAAGCAAGAGCTCTTCCGTC
GCTTCAACAGTTTCTCGTTCGCAGCGAAGGACGATCCCATCCAGGCGCTG
AACGACCTAGAGTTGATCTGGAGCCAGCTAAACACCAAGGACGGGGTTGA
ACTGGATCTGAGCTTTCTTCTAAAGAAGTTCATCGATATCTTGCCCACCC
CAGAGTACGAGGCTGCACAGAACAGCCTGCTGGCGATGAAGGAACCCAAC
AGGAACGACGTGGTGCGTCTCGTCACGACGCAGCGCGAGAAGATCAACAG
GCTGCGCGAAGAAGAAAACGTGCCAACGCAGCGGAAGGGGCAGGAGCAGG
CCTACATGGCGTCAGCTGGCAGAGGAAAAAGGGGCCGTGGCCGCGGTGGC
GGCGGCGGTGGTGGCGGAAATGGTGGCGGTACCAAAGGAGGCGGCGGGGG
CTCTGGTAGAAAGGGACGATGCTTCATCTGCCACCGAAGGGGGCACTACG
CTGACGACTGCACGTTCCCGAACGAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1058:27576..28151-

>mRNA_P-lacustris_contig1058.531.1 ID=mRNA_P-lacustris_contig1058.531.1|Name=mRNA_P-lacustris_contig1058.531.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1152bp|location=Sequence derived from alignment at P-lacustris_contig1058:27576..28151- (Pleurocladia lacustris SAG_25_93)
TCTATCATCAGACAGTGCACCAGTGGCAAGGAAGCTTTGCAGGAGTTGGA
TAAAGTGTACAGTCCTGACACTCAAGGGGCCAAGCAAGAGCTCTTCCGTC
GCTTCAACAGTTTCTCGTTCGCAGCGAAGGACGATCCCATCCAGGCGCTG
AACGACCTAGAGTTGATCTGGAGCCAGCTAAACACCAAGGACGGGGTTGA
ACTGGATCTGAGCTTTCTTCTAAAGAAGTTCATCGATATCTTGCCCACCC
CAGAGTACGAGGCTGCACAGAACAGCCTGCTGGCGATGAAGGAACCCAAC
AGGAACGACGTGGTGCGTCTCGTCACGACGCAGCGCGAGAAGATCAACAG
GCTGCGCGAAGAAGAAAACGTGCCAACGCAGCGGAAGGGGCAGGAGCAGG
CCTACATGGCGTCAGCTGGCAGAGGAAAAAGGGGCCGTGGCCGCGGTGGC
GGCGGCGGTGGTGGCGGAAATGGTGGCGGTACCAAAGGAGGCGGCGGGGG
CTCTGGTAGAAAGGGACGATGCTTCATCTGCCACCGAAGGGGGCACTACG
CTGACGACTGCACGTTCCCGAACGACTCTATCATCAGACAGTGCACCAGT
GGCAAGGAAGCTTTGCAGGAGTTGGATAAAGTGTACAGTCCTGACACTCA
AGGGGCCAAGCAAGAGCTCTTCCGTCGCTTCAACAGTTTCTCGTTCGCAG
CGAAGGACGATCCCATCCAGGCGCTGAACGACCTAGAGTTGATCTGGAGC
CAGCTAAACACCAAGGACGGGGTTGAACTGGATCTGAGCTTTCTTCTAAA
GAAGTTCATCGATATCTTGCCCACCCCAGAGTACGAGGCTGCACAGAACA
GCCTGCTGGCGATGAAGGAACCCAACAGGAACGACGTGGTGCGTCTCGTC
ACGACGCAGCGCGAGAAGATCAACAGGCTGCGCGAAGAAGAAAACGTGCC
AACGCAGCGGAAGGGGCAGGAGCAGGCCTACATGGCGTCAGCTGGCAGAG
GAAAAAGGGGCCGTGGCCGCGGTGGCGGCGGCGGTGGTGGCGGAAATGGT
GGCGGTACCAAAGGAGGCGGCGGGGGCTCTGGTAGAAAGGGACGATGCTT
CATCTGCCACCGAAGGGGGCACTACGCTGACGACTGCACGTTCCCGAACG
AC
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