mRNA_P-lacustris_contig1057.527.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1057.527.1
Unique NamemRNA_P-lacustris_contig1057.527.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1057.527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1057contigP-lacustris_contig1057:59434..59796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815326.2804205-CDS-P-lacustris_contig1057:59433..597961622815326.2804205-CDS-P-lacustris_contig1057:59433..59796Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1057 59434..59796 +
1693493477.9494202-CDS-P-lacustris_contig1057:59433..597961693493477.9494202-CDS-P-lacustris_contig1057:59433..59796Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1057 59434..59796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1057.527.1prot_P-lacustris_contig1057.527.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1057 59434..59796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1057.527.1

>prot_P-lacustris_contig1057.527.1 ID=prot_P-lacustris_contig1057.527.1|Name=mRNA_P-lacustris_contig1057.527.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=121bp
MEGKPVRASILDARAVFQKSLERNKTSRPSSGYGILYSRHLKIPLPYTGA
HFLSYSSSNTESAQFRPQRRRRCLFEEPHARSDNHSSDQHQNRTAAAAPP
SPPPITTTAVEGTRRLRPRFA
back to top

mRNA from alignment at P-lacustris_contig1057:59434..59796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1057.527.1 ID=mRNA_P-lacustris_contig1057.527.1|Name=mRNA_P-lacustris_contig1057.527.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=363bp|location=Sequence derived from alignment at P-lacustris_contig1057:59434..59796+ (Pleurocladia lacustris SAG_25_93)
ATGGAAGGAAAACCGGTGCGCGCGTCGATACTTGATGCTCGGGCCGTTTT
TCAAAAATCGTTAGAACGAAACAAAACGTCCCGGCCATCATCTGGGTATG
GAATACTTTACAGCCGTCATCTGAAGATCCCCCTTCCCTACACCGGTGCT
CATTTCCTGTCATACAGCAGTAGCAACACGGAGTCAGCTCAATTTCGCCC
ACAACGCCGCCGCCGCTGCTTGTTCGAGGAACCGCATGCCCGCAGCGACA
ACCACAGCAGTGACCAACACCAGAATCGGACTGCAGCAGCAGCACCACCA
TCACCACCACCAATAACTACAACAGCGGTGGAGGGGACTCGCAGGTTACG
TCCCCGTTTCGCC
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1057:59434..59796+

>mRNA_P-lacustris_contig1057.527.1 ID=mRNA_P-lacustris_contig1057.527.1|Name=mRNA_P-lacustris_contig1057.527.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=726bp|location=Sequence derived from alignment at P-lacustris_contig1057:59434..59796+ (Pleurocladia lacustris SAG_25_93)
ATGGAAGGAAAACCGGTGCGCGCGTCGATACTTGATGCTCGGGCCGTTTT
TCAAAAATCGTTAGAACGAAACAAAACGTCCCGGCCATCATCTGGGTATG
GAATACTTTACAGCCGTCATCTGAAGATCCCCCTTCCCTACACCGGTGCT
CATTTCCTGTCATACAGCAGTAGCAACACGGAGTCAGCTCAATTTCGCCC
ACAACGCCGCCGCCGCTGCTTGTTCGAGGAACCGCATGCCCGCAGCGACA
ACCACAGCAGTGACCAACACCAGAATCGGACTGCAGCAGCAGCACCACCA
TCACCACCACCAATAACTACAACAGCGGTGGAGGGGACTCGCAGGTTACG
TCCCCGTTTCGCCATGGAAGGAAAACCGGTGCGCGCGTCGATACTTGATG
CTCGGGCCGTTTTTCAAAAATCGTTAGAACGAAACAAAACGTCCCGGCCA
TCATCTGGGTATGGAATACTTTACAGCCGTCATCTGAAGATCCCCCTTCC
CTACACCGGTGCTCATTTCCTGTCATACAGCAGTAGCAACACGGAGTCAG
CTCAATTTCGCCCACAACGCCGCCGCCGCTGCTTGTTCGAGGAACCGCAT
GCCCGCAGCGACAACCACAGCAGTGACCAACACCAGAATCGGACTGCAGC
AGCAGCACCACCATCACCACCACCAATAACTACAACAGCGGTGGAGGGGA
CTCGCAGGTTACGTCCCCGTTTCGCC
back to top