mRNA_P-lacustris_contig1057.525.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1057.525.1
Unique NamemRNA_P-lacustris_contig1057.525.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1057.525.1 vs. uniprot
Match: D8LJZ7_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJZ7_ECTSI)

HSP 1 Score: 934 bits (2413), Expect = 0.000e+0
Identity = 601/895 (67.15%), Postives = 641/895 (71.62%), Query Frame = 2
Query:  362 MLTMPAATAAGTPMVVSEDHEPSRPA-VLRMAIVGENADELGLRIAERYGLVVASMDGLMTGRKGRKTDSVKAKAAAEWFTEEGDATVGEGRNDWRAGRVLTGFPTTATQAELLEKQGVDLEQLVLVTRAGEVPRKAGEENDSVNANEEEEQRLLTERLAGRVVKLAGQQDVDSFCDSATSLLAIGGEQ--SARVAKSSPQRPLPP---------PPSTMLSDTDMWMSPSEHAATHAEATELGAVGPEA--DRRARSRAGAEAKKAKKEAIRQKKRIANEAQQLDTPFYAVVATGGPKARFRAPVPMVPSRITERLSSAVSPGGGEKD------TSSNTRLEFGSLELNSPASDCLLAAGITEPTGIQKAGMGPILNGESVILHAMTGSGKTLTFLLPLMQRWTPGLFYPEAA---KAGAKTGKRSRRGDAGAGPAPWQVLLALPTRELAVQVAREVVLLSGGLTASVELLVDASVLHDLSKVTAPIVVGSAKVLERLIRKSHPTVRNDVLPRIKCIVVDEVDRLVDVLSKHAPAKEAEKRKKHARPIEALLERVLSANGEAQVVACSATIGRPLRRELGHIVRRASSIGTLPSAAGYGSGGAENEAGGSNRRHELRVIRDALTESMGRSLATERAVVIPNTIRHYCVPLKDGDFFSRLEGLTAAVRELQPRRPLIFVPPHERVTAVVAHLRRAGGPVGARAVALHEAMGFVSDEDFGGVRGRHASEAIQKHDELVGQFKVRGANAAGGGKRASXXXXXXXXXXSEIGAAERGXXXXXXXXXGDLLAGXXXXXXXXSRNGDGDGGSIEEPMDVLVTGEDSARGLHFDGVDFVFLMQKPKSPDEYVHLAGRTXXXXXXXXXXXXXXXXXFRKLMGWSKSLKVNFEPLDILNVAKR 2977
            M + P+AT AG  + V +DHEPSRPA +LR+AIVGENADELGLRIAER+GLV  SMDGLM GRKGRKTD+VKAKAAAEW           G      G VLTGFPTTATQAELLEKQGV +EQLVL+ RAG  P +A       N +E  E  LLT RL G+VVKL  QQDVDS CDSA SLLA  G Q  S+   +     P PP         PPST L D DM MSPSE A   AEA +    G EA   RRARSRAGA+AK+A+K AIR+KKR+ANEAQQLDTPFY  VA GGPKARFR PVPMVPSRITERLSSA SPG GE         + NTRL+FG L L+SPASDCLLAAGITEPTGIQ+AGMGPILNGESVILHAMTGSGKTLTFLLPLMQRWTPGL    AA    AG    + S +   G   APWQ+LLALPTRELAVQVAREVVLLSGGLTASVELLVDA+  HDLSKVTAPIVVGSAKVLER IRKS PTVR DVLPRIKCIVVDEVDRLVDVLSKHAPAKEAEKRK+HARPI ALLERVL+ANGEAQ   C     +P  R  GH  R    +G  P   G+ SG                                  AVVIP+TIRHYCVPL DGDFFSRLEGLTAAVRELQPRRPLIFVPP ERVTAVVAHLRRAGG VGARAVALHEAMGFVSDEDFG VRGRH SEAI++HD LV    + G    GG +   XXXXXXXXXX    +             G LLAG         RNGDGD     E  DVLVTGE SARGLHFD VDFVFLMQKPKSPDEYVHLAGRT XXXXXXXXXXXXXXXXFRKL GWS SLKVNFEPLDILNV KR
Sbjct:    1 MTSTPSATTAGREVPV-QDHEPSRPAGLLRLAIVGENADELGLRIAERHGLVATSMDGLMKGRKGRKTDNVKAKAAAEWL----------GTCPASTGGVLTGFPTTATQAELLEKQGVGVEQLVLLERAGAAPEEAA------NESEGGELHLLTSRLEGKVVKLPSQQDVDSLCDSAASLLAASGGQQRSSAALRDVDDAPAPPAKAAETSALPPST-LRDADMMMSPSELAVARAEAADPEPEGVEAADHRRARSRAGAKAKRAEKAAIRRKKRMANEAQQLDTPFYVAVAQGGPKARFRPPVPMVPSRITERLSSAASPGSGEXXXXXXXXAAVNTRLDFGPLVLDSPASDCLLAAGITEPTGIQQAGMGPILNGESVILHAMTGSGKTLTFLLPLMQRWTPGLLSTSAAAAASAGVNGERASDKAGGGVSHAPWQLLLALPTRELAVQVAREVVLLSGGLTASVELLVDANTFHDLSKVTAPIVVGSAKVLERRIRKSRPTVREDVLPRIKCIVVDEVDRLVDVLSKHAPAKEAEKRKRHARPIAALLERVLAANGEAQ---CR----KP--RAQGHPRRLLRVVGPKP---GHRSG----------------------------------AVVIPDTIRHYCVPLGDGDFFSRLEGLTAAVRELQPRRPLIFVPPQERVTAVVAHLRRAGGAVGARAVALHEAMGFVSDEDFGVVRGRHFSEAIEQHDRLVAGQSLAGGGEGGGREPXXXXXXXXXXXXXADESGVVTGAGGSGSSSGHLLAGGVGPGGMRLRNGDGDA----EVGDVLVTGEGSARGLHFDDVDFVFLMQKPKSPDEYVHLAGRTGXXXXXXXXXXXXXXXXFRKLQGWSYSLKVNFEPLDILNVLKR 827          
BLAST of mRNA_P-lacustris_contig1057.525.1 vs. uniprot
Match: A0A835ZA34_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA34_9STRA)

HSP 1 Score: 299 bits (766), Expect = 2.890e-83
Identity = 302/942 (32.06%), Postives = 401/942 (42.57%), Query Frame = 2
Query:  437 AVLRMAIVGENADE-LGLRIAERYGLVVASMDGLMTGRKGRKTDSVKAKAAAEWFTEEGDATVGEGRNDWRAGRVLTGFPTTATQAELLEKQGVDLEQLVLVTRAGEVPRKAGEENDSVNANEEEEQRLLTERLAGRVVKLAGQQDVDSFCDSATSLLA-IGGEQSAR----VAKSSPQRPLPPPP----------------------------------------------------------STMLSDTDMWMSPSEHA--ATHAEATELGAVGPEADRRARSRAGAEAKKAKKEAIRQKKRIANEAQQLDTPFYAVVATGGPKARFRAPVPM----------VPSRITERLSSAVSPG---GGEKDTSSNTRLEFGSLELNSPASDCLLAAGITEPTGIQKAGMGPILNGESVILHAMTGSGKTLTFLLPLMQRWTPGLFYPEAAKAGAKTGKRSRRGDAGAGPAPWQVLLALPTRELAVQVAREVVLLSGGLTASVELLVDASVLHDLSKVTAPIVVGSAKVLERLIRKSHPTVRNDVLPRIKCIVVDEVDRLVDVLSKHAPAKEAEKRKKHARPIEALLERVLSANGEAQVVACSATIGRPLRRELGHIVRRASSIGTLPSAAGYGSGGAENEAGGSNRRHELRVIRDALTESMGRSLATERAVVIPNTIRHYCVPLKDGDFFSRLEGLTAAVRELQP--RRPLIFVPPHERVTAVVAHLRRAGGPVGARAVALHEAMGFVS-------------------DEDFGGVRGRHASEAIQKHDELVGQF-KVRGANAAGGGKRASXXXXXXXXXXSEIGAAERGXXXXXXXXXGDLLAGXXXXXXXXSRNGDGDGGSIEEPMDVLVTGEDSARGLHFDGVDFVFLMQKPKSPDEYVHLAGRTXXXXXXXXXXXXXXXXXFRKLMGWSKSLKVNFEPLDI 2959
            A +R+AI+G+ A++ +   +A +YG    ++   +  +KGRKTD VKA  A        DA  G        G VL GFP +  +AEL    G +  +LV V R GE    A  E  S           L  R  G+VV++ G         SA ++LA IGG  +A     V  S P  P  P                                                              ML        P   A     A + +L A+                     EA  +     N       P+YA VA    K +                   S+I ++L+S  S G    G+  T ++  + FG LEL    ++CL+ AGI+ P+ IQ A M  I  GESV+LHA TGSGKTL FLLPLMQR          A  GA                P QV++ +PTRELAVQ+ARE VLL GG T  V+L +D      L+ V APIVVG+AKVL + ++K+ P+ R ++L  +  +V DEVDRLVD LSK+A  +EA++RK+H RPI  LL  + + + E QV+A SAT+GRPLRREL      A ++G      G     A   A   ++   + V  D     +   LA  RAV+IP TI H  + L   DF  ++     AVR L+P  RRPLIF+P  E V  V   LR + G V AR   LHEAMGF S                    ED       HA++A+  HD L   + +  GA                                                       G+G+GG   E   VLV   DSARGLHF+GVD V ++ + + PDEYVHL+GRT XXXXXX           + + GW   LK   E   +
Sbjct:   47 AAVRVAIIGDCAEDGVASAVAAKYGAEACNVAAALREKKGRKTDKVKATVARHLA----DAASG--------GWVLVGFPNSVPEAELFASSGDNFTKLV-VLRTGEGQAAATGEMAS-----------LISRFEGQVVEVNG--------GSAEAVLAAIGGASNAANSDAVVASQPMAPAAPVELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEQVMLDAAAALPQPPSDAEEGDAAPSPQLSAI---------------------EASMESIAALNTPAAPSIPWYAAVAKPTKKVKXXXXXXXXXXXXXXXDSAASKIVQQLAST-STGKKLNGDLGTDADASVAFGELELRGAMAECLVKAGISTPSPIQAASMSRIATGESVMLHAETGSGKTLAFLLPLMQR---------IAATGANK--------------PLQVMVVVPTRELAVQIAREAVLLGGGATKGVDLFLDQQAGVTLADVKAPIVVGTAKVLAQAVKKTRPSERVELLANLSAVVCDEVDRLVDTLSKYATKREADQRKRHPRPIMPLLTALKTRHPELQVIASSATVGRPLRREL------AQALGLEDFKDGPAVVRANAIAPPRSKTSTVTVEEDDADGDVPADLAHSRAVMIPATIAHRYIALYREDFEEKIAAAVTAVRALRPPPRRPLIFIPASESVNRVALRLR-SSGLVNARP--LHEAMGFASAVDTDAAXXXXXXXXXXXXTEDDAPSGFAHATQALAAHDALAALYAETEGA-------------------------------------------------------GEGEGGV--EHAQVLVASADSARGLHFEGVDLVVILGRARGPDEYVHLSGRTGXXXXXXTVVSVVTYKEAKAMKGWEAQLKFRLEQWQV 845          
BLAST of mRNA_P-lacustris_contig1057.525.1 vs. uniprot
Match: A0A7S2Y0L3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0L3_9STRA)

HSP 1 Score: 221 bits (563), Expect = 3.790e-57
Identity = 195/627 (31.10%), Postives = 283/627 (45.14%), Query Frame = 2
Query: 1175 DTPFYAVVATGGPKARFRAPVPMVPSRITERLSSAVSPGGGEKDTSSNTRLEFGSLELNSPASDCLLAAGITEPTGIQKAGMGPILNGESVILHAMTGSGKTLTFLLPLMQR--WTPGLFYPEAAKAGAKTGKRSRRGDAGAGPAPWQVLLALPTRELAVQVAREVVLLSGGLTASVELLVDASVL---------------HDLSKVTAPIVVGSAKVLERLIR--KSHPTVRNDVLPRIKCIVVDEVDRLVDVLSKHAPAKEAEKRKKHARPIEALLERVLSA--NGEA------QVVACSATIGRPLRREL----GHIVRRASSI-GTLPSAAGYGSGGAENEAGGSNRRHELRVIRDALTESMGRSLATERAVVIPNTIRHYCVPLKDGDFFSRLEGLTAAVRELQPRRPLIFVPPHERVTAVVAHLRRAGGPVGARAVALHEAMGFVSDEDFGGVRGRHASEAIQKHDELVGQFKVRGANAAGGGKRASXXXXXXXXXXSEIGAAERGXXXXXXXXXGDLLAGXXXXXXXXSRNGDGDGGSIEEPMDVLVTGEDSARGLHFDGVDFVFLMQKPKSPDEYVHLAGRTXXXXXXXXXXXXXXXXXFRKLMGWSKSLKVNFEPLDI 2959
            + P+Y  + T  P+A   AP+P++PSRI E  + ++     + +      LEFG L L S  +  L  AGIT P+ IQ   M  I  G + ++HA TGSGKTL +LLPL+    W+                             P Q+L+  P RELAVQ+ RE+V+L GG +  VEL+++                   H   +  APIVV +A+ +E  ++  K     + + L  I+ +V+DEVDRL+D L K+A  KE  +R+ H RP   LL  +  +  +GEA      Q+VACSAT+GR L REL    G + R    + G+   +   G G  E+  GG   +                   T R V +P +I+H+ +P        ++E L  A+  L+PR PL+F+P   +++ V+  L   G      A ALH+AMGF S  +    R      A+   D +   F+ +                                                               S +E   +LV  ED+ARGLHF+ VD+VFL+ KPK+PDEY+HLAGRT XXXXXXX          +K+  W K L V  E L++
Sbjct:  187 EEPYYMRLKTKTPRAP-AAPLPIIPSRIQEVDAQSLKAMREQVEP-----LEFGPLTLRSSMAAALRQAGITTPSPIQANAMTAIRQGSNAVVHAETGSGKTLAYLLPLLMDMDWST----------------------------PRQLLVVAPGRELAVQIGREMVVLLGGRSDLVELVLEGKPKTVQGGNQREKNLASGHPALRTQAPIVVATARQMEIALKTSKKFEEHKTNFLKSIRTVVLDEVDRLIDPLPKYATLKERRQRELHPRPASTLLYNLFLSRISGEAAALPKVQLVACSATVGRQLTRELCRLTGMMPRDLPVLRGSDADSLSLGDGDGEDPEGGGAEK-------------------TLRYVNVPPSIKHFYIPTMKESLEEKMEELLVAITMLKPRAPLLFIPRDAKISGVIEELHSVGL---TEAQALHQAMGFGSGHETSN-RRHEGKSAMLSLDHIASLFQKK---------------------------------------------------------------SEDERPPLLVASEDTARGLHFNEVDYVFLLAKPKTPDEYLHLAGRTGXXXXXXXVVTVISFREVKKMKAWKKILGVELEELEL 693          
BLAST of mRNA_P-lacustris_contig1057.525.1 vs. uniprot
Match: A0A0G4EJG7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJG7_VITBC)

HSP 1 Score: 209 bits (531), Expect = 1.880e-54
Identity = 176/543 (32.41%), Postives = 249/543 (45.86%), Query Frame = 2
Query: 1427 ILNGESVILHAMTGSGKTLTFLLPLMQRWTPGLFYPEAAKAGAKTGKRSRRGDAGAGPAPWQVLLALPTRELAVQVAREVVLLSGGLTAS-----------VELLVDASVL---HDLSKVTAPIVVGSAKVLERLIR-------KSHPTVR---NDVLPRIKCIVVDEVDRLVDVLSKHAPAKEAEKRKKHARPIEALLERVLSANGE----AQVVACSATIGRPLRRELGHI--VRRASSIGTLPSAAGYGSGGAENEAGGSNRRHELRVIRDALTESMGRSLATERAVVIPNTIRHYCVPLKDGDFFSRLEGLTAAVRELQPRRPLIFVPPHERVTAVVAHLRRAGGPVGARAVALHEAMGFVSD--EDFGGVRGRHASEAIQKHDELVGQFKVRGANAAGGGKRASXXXXXXXXXXSEIGAAERGXXXXXXXXXGDLLAGXXXXXXXXSRNGDGDGGSIEEPMDVLVTGEDSARGLHFDGVDFVFLMQKPKSPDEYVHLAGRTXXXXXXXXXXXXXXXXXFRKLMGWSKSLKVNFEPLDI 2959
            IL+GE V+LH+ TGSGKTL FLLPLM R          A+A    G    R       AP + L+  PTRELA+Q+A+E++ L G LT S           V L++D   L     L + + P VVG+A  L R +R       + H   R   + +L  ++ +++DEVDRLV  L ++A  ++ E RKKH RP   + + VL  +       Q++A SATIGRPLRREL ++  VR     G L                         +IR    E    S    RAV +P+TI H+ +PL +    +++ GL AA+R L+P RPLIF+ PH  V ++   L+  G       + LHEA+GF S   +    +R + + EA+ KH EL G+FK +    A                  +    ER                         +N             +LV   D ARGLHF+ VD VF++ +P++PDEY HLAGRT                  R L+ W K L ++  PL +
Sbjct:    4 ILSGEDVLLHSETGSGKTLAFLLPLMVR--------RLAQARRARGAARER-------APMETLVIAPTRELAIQLAQEILELEGALTGSRSNDPLQRPDLVHLVIDDENLPLERTLLRTSCPYVVGTATSLLRALRYDSTASSQHHHLARVKPHRLLQNVRHLIMDEVDRLVSPLGRYATLRDKEVRKKHPRPATVIAQAVLETSRHLRQSVQLIAASATIGRPLRRELANMMGVRDVDKGGPL-------------------------LIRPFEVEEYLHS----RAVGVPDTIEHFFLPLTNNTLGAKVNGLVAALRTLKPSRPLIFLAPHHSVRSLTHFLKTQGFQ---DTMPLHEALGFHSGFKKKTRDLRVKTSQEALAKHQELKGRFKKQDGEEA----------------VPDAALQER------------------IDNTVVDKN---------SSPPLLVASMDGARGLHFNQVDMVFVLGRPRTPDEYQHLAGRTGRQGAGGTAVIIGDSFEVRSLLAWRKMLGIDIRPLRV 456          
BLAST of mRNA_P-lacustris_contig1057.525.1 vs. uniprot
Match: A0A7S3A3J3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A3J3_9RHOD)

HSP 1 Score: 166 bits (419), Expect = 4.740e-40
Identity = 124/404 (30.69%), Postives = 194/404 (48.02%), Query Frame = 2
Query: 1301 KDTSSNTRLEFGSLELNSPASDCLLAAGITEPTGIQKAGMGPILNGESVILHAMTGSGKTLTFLLPLMQRWTPGLFYPEAAKAGAKTGKRSRRGDAGAGPAPWQVLLALPTRELAVQVAREVVLLSGGLTASVELLVDASVLHDLSKVTAPIVVGSAKVLERLIRKSHPTVRNDVLPRIKCIVVDEVDRLVDVLSKHAPAKEAEKRKKHARPIEALLERVLSANGEAQVVACSATIGRPLRRELGHIVRRASSIGTLPSAAGYGSGGAENEAGGSNRRHELRVIRDALTESMGRSLATERAVVIPNTIRHYCVPLKDGDFFSRLEGLTAAVRELQPRRPLIFVPPHERVTAVVAHLRRAGGPVGARAVALHEAMGFVSDEDFGGVRGRHASEAIQKHDELVGQF 2512
            ++   N  +EFG ++++S  S+ L    + +P+ IQ+A +  + NGE+ +LH+ TGSGKT+ +LLP+++     +   E  KA                      L+ +P+REL VQV  E   L    +  V  L + ++       T  ++VG+AK +  L  K             K IV DEVDRL+  + KHA     +K+K+H RP  A+LER+     E QV+A SAT+GRPL+REL       +S+  LP   G                  +R  +D L E    S      ++IP  I H C+P+   ++   ++ L  A+  L P++PLIF+  +  +T V+  LR  G    A A ALHEA GF         +G  + E++ K+ +L+  F
Sbjct:   52 EEADENVGVEFGGIQIDSAVSEALARRNVRDPSPIQRAALARLSNGETAVLHSETGSGKTIAYLLPIIKN----MLESEVKKA---------------------YLIIVPSRELGVQVYSEACALLCDESGRVSYLEELNMPR-----TGTLLVGTAKTVHALSDKFG---FKGFFNMFKVIVFDEVDRLIGTVGKHAARAVKQKKKRHTRPASAILERIARDGMECQVIAASATVGRPLKREL-------ASLLNLPMKDGMAV---------------IRPAQDILPEG---SSGNGSRLLIPKNIEHICLPVIIDEYSEMMDALAGALVHLNPKKPLIFINKNASITKVIEELRERGF---AEATALHEAYGFG--------KGVTSLESMDKYGKLMSSF 386          
BLAST of mRNA_P-lacustris_contig1057.525.1 vs. uniprot
Match: A0A1Z5JEC7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEC7_FISSO)

HSP 1 Score: 137 bits (345), Expect = 9.810e-30
Identity = 157/575 (27.30%), Postives = 233/575 (40.52%), Query Frame = 2
Query: 1325 LEFGSLELNSPASDCLLAAGITEPTGIQKAGMGPILNGESVILHAMTGSGKTLTFLLPLMQR-WTPGLFYPEAAKAGAKTGKRSRRGDAGAGPAPWQVLLALPTRELAVQVAREVVLLSGG-----LTASVELLVDAS----VLHDLSKV-TAP-IVVGSAKVLERLI----RKSHPTVRN----DVLPRIKCIVVDEVDRLVDVLSKHAPAKEAEKRKKHARPIEALLERVLSAN-GEAQVVACSATIGRPLRRELGHIVRRASSIGTLPSAAGYGSGGAENEAGGSNRRHELRVIRDALTESMGRSLATERAVVIPNTIRHYCVPLKDGDFFSRLEGLTAAVRELQPRRPLIFVPPHERVTAVVAHLRRAGGPVGARAVALHEAMGFVSDEDFGGVRGRHASEAIQK---------HDELVGQFK-VRGANAAGGGKRASXXXXXXXXXXSEIGAAERGXXXXXXXXXGDLLAGXXXXXXXXSRNGDGDGGSIEEPMDVLVTGEDSARGLHFDGVDFVFLMQKPKSPDEYVHLAGRTXXXXXXXXXXXXXXXXXFRKLMGWSKSLKVNFEPLD 2956
            + F  L+L++ A D L  A   +P+ IQ A +  ++ GES ILHA TGSGKTL FLLPL +  WT G      A                       V++A PTRELA Q+A    +L+       ++   +L+ D +    V  D+ ++ T P + +GSAK +   +    +   P  R     + L  ++CIV+DEVDR++ V    A   E + +K H +P   +   V     G  Q+VA SAT+GRPLRREL  ++            AG G+G A                        G+  AT RAV IP+++ +Y VP       S  + LTAA + +Q             +TAV ++ R          + L +  G  +    G ++        Q           D ++  ++ V GA+  G  +R                +A  G                                       VLVTGED+ RGLH DG+D+V ++ +P  PDEY H+AGRT                    L+ WS+ L V F  + 
Sbjct:  169 INFAGLKLSTVAGDALGRAKFFKPSPIQAAAIPQLVRGESCILHAETGSGKTLAFLLPLTEYLWTQGQDRDSFA-----------------------VVMA-PTRELASQIAGIAAVLAPPGTVRFISRPTDLMADGAKERGVPIDVDELGTKPRLFIGSAKTIMHSLYGDGKMPAPPTRKPEAMEFLKNVRCIVMDEVDRMLAVQKSRA---EKQYKKIHEKPAAVVCAAVTRLTLGRVQIVAASATVGRPLRRELARVLGLPPQECPPVICAGDGTGDA------------------------GQDAATTRAVTIPDSVTNYVVPTAGS---SPGQVLTAAYQVIQS------------LTAVKSNARIL--------LVLSKGFGMNTQNSIGALKHFGCQPEPQNLLDTLEADGTDHMIELYREVSGADGVGQSRRQDDK------------SASSGY--------------------------------------VLVTGEDTVRGLHLDGLDYVLVLGRPNGPDEYTHIAGRTGRAGTPGKVFSIMSESDSASLVSWSRMLGVEFHTIS 619          
BLAST of mRNA_P-lacustris_contig1057.525.1 vs. uniprot
Match: A0A7S1EPT1_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EPT1_9RHOD)

HSP 1 Score: 133 bits (334), Expect = 1.520e-28
Identity = 157/604 (25.99%), Postives = 249/604 (41.23%), Query Frame = 2
Query: 1238 PMVPSRITERLSSAVSPGGGEKDTSSNTRLEFGSLELNSPASDCLLAAGITEPTGIQKAGMGPILNGESVILHAMTGSGKTLTFLLPLMQRWTPGLFYPEAAKAGAKTGKRSRRGDAGAGPAPWQVLLALPTRELAVQVAREVVLLSGGLTASVELLVDASVLHDLSK------VTAPIVVGSAKVLERLIRK------SHPTVRNDVLPRIKCIVVDEVDRLVDVLSKHAPAKEAEKRKKH--ARPIEALLERVL------SANGEA-----QVVACSATIGRPLRRELGHIVRRASSIGTLPSAAGYGSGGAENEAGGSNRRHELRVIRDALTESMGRSLATERAVVIPNTIRHYCVPLKDG--DFFSRLEGLTAAVRELQPRRPLIFVPPHERVTAVVAHLRRAGGPVGARAVALHEAMGFVSDEDFGGVRGRHASEAIQKHDELVGQFKVRGANAAGGGKRASXXXXXXXXXXSEIGAAERGXXXXXXXXXGDLLAGXXXXXXXXSRNGDGDGGSIEEPMDVLVTGEDSARGLHFDGVDFVFLMQKPKSPDEYVHLAGRTXXXXXXXXXXXXXXXXXFRKLMGWSKSLKVNFEPLDILNV 2968
            P VP + +    +A+       D SS     FG LE+       L   GI   T IQ+  M  +  GES++++A TGSGKTL F LPL+      L    + ++  +  + SR          W  L+  P+RELA+Q  + +  L   L    E  +  SVL ++SK      V  P  V SA ++    R       S  T RND+L +++C+V+DE DR++   SK+A ++E    K+H   +P   +L+ +       S  G++     QVVA SAT+GRP RR L +++     +   P+                  R E +   D     +G ++ T ++V IP+ IRH  +P++D   DF  R   L AA+   + +  L+ +  ++   + +  L+  G      AV +HEA GF+S        G  + +A+        Q K+   +  G                SE                                       +    + VLVT   + RGLHFDG+ +VFL+    S +EY H AGRT                  ++L     +LK+  +   I ++
Sbjct:   83 PFVPRKASSLTENAL-------DESSQKETLFGGLEIPDWIQSSLHEMGIESATDIQERCMESLFRGESLLINAETGSGKTLAFTLPLVLDLLRQLRLDSSNESNDQE-QTSRH---------WYGLILAPSRELALQTWKTLETL---LKFDKESRIRVSVLFEVSKSDSNERVELPADVASAHIVVATPRALFEQMDSSSTARNDLLTQVRCVVLDEADRMISAASKYARSREQMHAKRHLATKPAVQILDYLTDMDIRSSVFGDSRDQGLQVVAVSATMGRPFRRLLANVMH-IQDMKLAPTFV----------------RSETKATAD-----IGDAIVT-KSVTIPSGIRHIYLPVEDELPDFNQRSAVLHAAMMHAKVQNALVIIAENQSTASAIEALKSLGWK---SAVPVHEAFGFLS--------GSFSRDAVLGK---ASQNKIENGSTTG----------------SETAGLN----------------------------------AYPANVPVLVTSFGALRGLHFDGLQWVFLLGGAPSMEEYQHAAGRTGRCGTEGTIVSLVSWSEAKQLRSTQTALKIQLQKWRIEDI 579          
BLAST of mRNA_P-lacustris_contig1057.525.1 vs. uniprot
Match: A0A7S4BGH9_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BGH9_CHRCT)

HSP 1 Score: 128 bits (321), Expect = 8.680e-27
Identity = 167/617 (27.07%), Postives = 249/617 (40.36%), Query Frame = 2
Query: 1382 GITEPTGIQKAGMGPILNGESVILHAMTGSGKTLTFLLPLMQRWTPGLFYPEAAKAGAKTGKRSRRGDAGAGPAPWQVLLALPTRELAVQVAREVVLLSGGLT---ASVELLVDASVLHDLSKVTAPIVVGSAKVLERLIRKSHPT--VRNDVLPRIKCIVVDEVDRLVDVLSKHAPAKEAEKRKKHAR----PIEALLERVLSANGEAQV--VACSATIGRPLRRELGHIVRRASSIGTLPSAAGYGSGGAENEAGGSNRRHELRVIRDALTESMGRSLATERAVVIPNTIRHYCVPLK-------DGDFFSRLEG-------------------------------------LTAAVRELQPRRPLIFVPPHERVTAVVAHLRRAGGPV---GARAVALHEAMGFVSDEDFGGVRGRHASEA-IQKHDELV---------------------------GQFKVRGANAAGGGKRASXXXXXXXXXXSEIGAAERGXXXXXXXXX---GDLLAGXXXXXXXXSRNGDGDGGSIEEPMDVLVTGEDSARGLHFDGVDFVFLMQKPKSPDEYVHLAGRTXXXXXXXXXXXXXXXXXFR-KLMGWSKSL-KVNFEPLDI 2959
            GI+ PT IQ+A +  +LNGESV+LHA TGSGK+L FLLP + R   G                             ++L+  PTRELAVQ+A E    + GL    + V+++   +     + + A ++  +A  +  LI  S  T  V  +VL R++ +V+DE+D L+ + + + P     KR  + +    P + LL  V  +N E Q+  VA SAT+ RP R +L  ++RR   +G   +++                   L ++R A   ++  S  + RAVVIP+ +RHY V +         G+  SRL                                       L  A+ ELQP   L+F+     +T     +RRA   +   G  A+ LHEA+G      F    G     A ++K    V                           G     G      G  ++          + + AA R             GD+ +         +      G S E P+  L+T ED ARGLHFDGV+ VF++  P SP  Y+HLAGRT                    +L GWS+ L K+ F  L+I
Sbjct:   47 GISSPTPIQRAALPRVLNGESVVLHAETGSGKSLAFLLPAILRLGEG----------------------------EKMLVVAPTRELAVQLANE----AAGLVTDPSEVQIIAIGATPLPQALLDARVICCTAPEMVALIDLSAETEGVLTEVLSRLRVVVLDELDSLLPIETVYGPRAAERKRSANKQRPEPPAQQLLRAVFESNMEPQLQLVAASATVSRPSRLKLERVLRR-DPLGRWFTSS-------------------LPIVRPAEIANLDLSTIS-RAVVIPSGVRHYYVRMPARVPSAGGGNAASRLAASGKGRVTLKQKRLLRAMKAKAASADAIAKAAHPLLLSLQHALNELQPSSALVFLCRSSGLT-----VRRAAKQLQRMGVSALPLHEAIGLEHAAAFPSNEGEERQTASLRKKRVRVDAGTGGQAXXXXXXXXXXXXXXXXXXNGDEWFAGTYDDANGYGSADLSVLLQQRHTALSAAFRKAGLNRKQEATDDGDVDSAKTDSTESDAGASGYAGSSTESPL--LITFEDMARGLHFDGVEVVFILGLPDSPSTYLHLAGRTGRQPVLNGTVVTICPGKSHTQLCGWSERLGKLAFTELNI 603          
BLAST of mRNA_P-lacustris_contig1057.525.1 vs. uniprot
Match: A0A7S3QIU8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QIU8_9STRA)

HSP 1 Score: 122 bits (306), Expect = 7.060e-25
Identity = 162/572 (28.32%), Postives = 237/572 (41.43%), Query Frame = 2
Query: 1328 EFGSLELNSPASDCLLAAGITEPTGIQKAGMGPIL--NGESVILHAMTGSGKTLTFLLPLMQRWTPGLFYPEAAKAGAKTGKRSRRGDAGAGPAPWQVLLALPTRELAVQVAREVVLLSGG-----LTASVELLVDASVLHDLS--------------KVTAPIVVGSAK-VLERLI--RKSHPTVRND----VLPRIKCIVVDEVDRLVDVLSKHAPAKEAEKRKKHARPIEALLERVLSAN-GEAQVVACSATIGRPLRRELGHIVRRASSIGTLPSAAGYGSGGAENEAGGSNRRHELRVIRDALTESMGRSLATERAVVIPNTIRHYCVPLKDGDFFSRLEGLTAAVRELQPRRPLIFVPPHERVTAVVAHLRRAGGPVGARAVALHEAMGFVSDEDFGGVRGRHASEAIQKHDELVGQFKVRGANAAGGGKRASXXXXXXXXXXSEIGAAERGXXXXXXXXXGDLLAGXXXXXXXXSRNGDGDGGSIEEPMDVLVTGEDSARGLHFDGVDFVFLMQKPKSPDEYVHLAGRTXXXXXXXXXXXXXXXXXFRKLMGWSKSLKVNFEPLD 2956
            +F  +++++ A   L  AG   PT IQ   + P+L  + ES+ILHA TGSGKTL +LLP+ +R      + E   +G   G+R+    A         L+  PTRELA QVA    +LS       +T    LL D+    + S              +    I+VGS+K +L  L    K HP          L     +V+DEVDRL ++  K    K ++  KKH +P   L   +     G+AQ+VA SAT+GRPLRREL  +      +G  P                       RV+R + T        T R + +P +++HY +P  DG     L    A   ++ P       P   +    +  + ++ G      + L +A+G +          +H +   Q   EL+G     G +      R              +G  ER          G LL                            VTGE++ RG+H DG+D V ++ +PK PDEY+H+AGR XXXXXXXX            L  W   L ++FEP+D
Sbjct:  169 KFAKMQISTAAGTALARAGFELPTPIQATAL-PLLTRDKESLILHAETGSGKTLAYLLPITER-----LWREEENSGL-LGERTDSSYA---------LILTPTRELAAQVAGIATVLSPPNSVRLVTTPTNLLRDSWADKERSEGENGGRFDHNFGGRQGTKIIVGSSKSILLSLFGDSKLHPPTSKPEAKKFLSSTTYLVLDEVDRLFNI--KTGRGKTSKFYKKHDKPAAILTSTIARTTLGQAQIVAASATVGRPLRRELARV------LGLTPDEC-------------------PRVVRPSGTVDD----PTTRPISVPKSLKHYALPC-DGTTSGSLLTAAAFATKVLP------TPASGKGRKTLFVITKSCG------INLRDAIGAL----------KHFNVQPQPK-ELLGALSGDGTDQLMNNYRR---------VSGSVGLGERAANVAFDENEGYLL----------------------------VTGEETVRGIHLDGLDTVVVVGRPKGPDEYIHIAGRAXXXXXXXXVINVLSYEQSNSLASWEGMLGISFEPVD 632          
BLAST of mRNA_P-lacustris_contig1057.525.1 vs. uniprot
Match: A0A8J6C5F0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C5F0_DIALT)

HSP 1 Score: 120 bits (301), Expect = 1.250e-24
Identity = 135/436 (30.96%), Postives = 191/436 (43.81%), Query Frame = 2
Query: 1337 SLELNSPASDCLLAAGITEPTGIQKAGMGPILNGESVILHAMTGSGKTLTFLLPLMQRWTPGLFYPEAAKAGAKTGKRSRRGDAGAGPAPWQVLLALPTRELAVQVAREVVLLSGGLTASVELLVDASVLHDLSKVTAPIVVGSAKVLE-RLIRKSHPT-VRNDVLPRIKCIVVDEVDRLVDVLSKHAP----AKEAEKR-KKHARPIEALLERVL--SANGEAQVVACSATIGRPLRRELGHIVRRASSIGTLPSAAGYGSGGAENEAGGSNRRHELRVIRDALTESMGRSLATERAVVIPNTIRHYCVPLKDGDFFSRLEGLTAAVRELQPRRPLIFVPPHERVTA--VVAHLRRAGGPVGARAVALHEAMGF---------VSDEDFGGVRGRHASEA------------IQKHDELVGQF--KVRGANAAGG 2542
            SL + +  S  LLA GI  PT IQ A    +  GESV+LHA TGSGK+L FLLPL+ R  P                              +VL+  PTRELAVQ+  +   ++  L  SV+L +  +     +  TA ++VG+   LE  L    H + +    + +++ +V+DEVDRL+ V     P    AK A  R K+H  P E LL  +L  + +   Q+VA SAT  + +R +L  ++RR    G    A                      ++R A    +  S A  RAV +P  + H   P+          G+  A+  L P   L FV    ++T     A L  AG P    AVALHEA+GF           D   GG   R  ++A            + +H  L G F  ++RGA+AAGG
Sbjct:   50 SLPMPAALSAALLARGIRAPTPIQSAAFSRVAGGESVVLHAETGSGKSLAFLLPLLLRLAPD----------------------------EKVLIVAPTRELAVQLGADAAGITAELGGSVQLAIVGTAPTVDALATARVLVGTPAELEYALCGTQHASELAARFVGKLRAVVLDEVDRLLPVTQTFGPQAARAKRASNRAKEHVSPTEVLLLALLERTPSPALQLVAASATASKTVRAKLHRVLRR-DQFGRWFDAPPA-------------------IVRPAELGQLELS-AQPRAVTVPAGVVHRVWPVPSLGARDLATGVRDALSALAPASALAFVCKSAKLTVSDATAALSAAGVP----AVALHEALGFRRGGSPGGGSPDSVAGGGADRTNADASAVDEADESVALLARHGALAGGFSARLRGASAAGG 432          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1057.525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJZ7_ECTSI0.000e+067.15DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835ZA34_9STRA2.890e-8332.06P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2Y0L3_9STRA3.790e-5731.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4EJG7_VITBC1.880e-5432.41Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S3A3J3_9RHOD4.740e-4030.69Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1Z5JEC7_FISSO9.810e-3027.30Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S1EPT1_9RHOD1.520e-2825.99Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S4BGH9_CHRCT8.680e-2727.07Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S3QIU8_9STRA7.060e-2528.32Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A8J6C5F0_DIALT1.250e-2430.96Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1057contigP-lacustris_contig1057:48554..53188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score945.7
Seed ortholog evalue1.7e-272
Seed eggNOG ortholog2880.D8LJZ7
KEGG koko:K09250,ko:K11594,ko:K20096
KEGG Pathwayko04622,ko05161,ko05203,map04622,map05161,map05203
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0335@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-06_007600.1
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03009,ko03019,ko03036,ko03041
Exons4
Model size3351
Cds size2883
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1057.525.1prot_P-lacustris_contig1057.525.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1057 48651..52817 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815326.8378434-UTR-P-lacustris_contig1057:48553..486501622815326.8378434-UTR-P-lacustris_contig1057:48553..48650Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1057 48554..48650 +
1693493478.2803056-UTR-P-lacustris_contig1057:48553..486501693493478.2803056-UTR-P-lacustris_contig1057:48553..48650Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1057 48554..48650 +
1622815326.8989217-UTR-P-lacustris_contig1057:52817..531881622815326.8989217-UTR-P-lacustris_contig1057:52817..53188Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1057 52818..53188 +
1693493478.3299968-UTR-P-lacustris_contig1057:52817..531881693493478.3299968-UTR-P-lacustris_contig1057:52817..53188Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1057 52818..53188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815326.8510466-CDS-P-lacustris_contig1057:48650..491911622815326.8510466-CDS-P-lacustris_contig1057:48650..49191Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1057 48651..49191 +
1693493478.290728-CDS-P-lacustris_contig1057:48650..491911693493478.290728-CDS-P-lacustris_contig1057:48650..49191Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1057 48651..49191 +
1622815326.8611608-CDS-P-lacustris_contig1057:49699..508461622815326.8611608-CDS-P-lacustris_contig1057:49699..50846Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1057 49700..50846 +
1693493478.2994013-CDS-P-lacustris_contig1057:49699..508461693493478.2994013-CDS-P-lacustris_contig1057:49699..50846Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1057 49700..50846 +
1622815326.8742976-CDS-P-lacustris_contig1057:51259..514581622815326.8742976-CDS-P-lacustris_contig1057:51259..51458Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1057 51260..51458 +
1693493478.30817-CDS-P-lacustris_contig1057:51259..514581693493478.30817-CDS-P-lacustris_contig1057:51259..51458Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1057 51260..51458 +
1622815326.8848853-CDS-P-lacustris_contig1057:51821..528171622815326.8848853-CDS-P-lacustris_contig1057:51821..52817Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1057 51822..52817 +
1693493478.3202856-CDS-P-lacustris_contig1057:51821..528171693493478.3202856-CDS-P-lacustris_contig1057:51821..52817Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1057 51822..52817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1057.525.1

>prot_P-lacustris_contig1057.525.1 ID=prot_P-lacustris_contig1057.525.1|Name=mRNA_P-lacustris_contig1057.525.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=961bp
MRLVTAAGGVVFAAHHVVGFSVRPLDATSIAPRQSALFQQRQTAATSAGS
LSPLLNSDGRECPACSRTSRRRPWWNTARRNSSGTVVSMLTMPAATAAGT
PMVVSEDHEPSRPAVLRMAIVGENADELGLRIAERYGLVVASMDGLMTGR
KGRKTDSVKAKAAAEWFTEEGDATVGEGRNDWRAGRVLTGFPTTATQAEL
LEKQGVDLEQLVLVTRAGEVPRKAGEENDSVNANEEEEQRLLTERLAGRV
VKLAGQQDVDSFCDSATSLLAIGGEQSARVAKSSPQRPLPPPPSTMLSDT
DMWMSPSEHAATHAEATELGAVGPEADRRARSRAGAEAKKAKKEAIRQKK
RIANEAQQLDTPFYAVVATGGPKARFRAPVPMVPSRITERLSSAVSPGGG
EKDTSSNTRLEFGSLELNSPASDCLLAAGITEPTGIQKAGMGPILNGESV
ILHAMTGSGKTLTFLLPLMQRWTPGLFYPEAAKAGAKTGKRSRRGDAGAG
PAPWQVLLALPTRELAVQVAREVVLLSGGLTASVELLVDASVLHDLSKVT
APIVVGSAKVLERLIRKSHPTVRNDVLPRIKCIVVDEVDRLVDVLSKHAP
AKEAEKRKKHARPIEALLERVLSANGEAQVVACSATIGRPLRRELGHIVR
RASSIGTLPSAAGYGSGGAENEAGGSNRRHELRVIRDALTESMGRSLATE
RAVVIPNTIRHYCVPLKDGDFFSRLEGLTAAVRELQPRRPLIFVPPHERV
TAVVAHLRRAGGPVGARAVALHEAMGFVSDEDFGGVRGRHASEAIQKHDE
LVGQFKVRGANAAGGGKRASGGDGGDGGPGSEIGAAERGGSSISGGGSGD
LLAGGGGGGRRRSRNGDGDGGSIEEPMDVLVTGEDSARGLHFDGVDFVFL
MQKPKSPDEYVHLAGRTGRQGRTGTVVSFVDFEEFRKLMGWSKSLKVNFE
PLDILNVAKR*
back to top

mRNA from alignment at P-lacustris_contig1057:48554..53188+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1057.525.1 ID=mRNA_P-lacustris_contig1057.525.1|Name=mRNA_P-lacustris_contig1057.525.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4635bp|location=Sequence derived from alignment at P-lacustris_contig1057:48554..53188+ (Pleurocladia lacustris SAG_25_93)
GGGTGTGAGGTGCGAGGTGTGAGGACCAGTTTTGGTGTTGGGACATGAGA CAATACTAACGCCACAACCCTGCATCCCCCTTGACCCAAGCACTAAAATG AGACTGGTGACTGCTGCCGGAGGAGTCGTGTTCGCTGCACATCATGTGGT CGGGTTTTCCGTTCGGCCGTTAGATGCAACCTCGATAGCTCCACGGCAAT CTGCTTTGTTTCAGCAACGTCAAACAGCAGCAACATCAGCAGGGTCACTC TCGCCACTGCTGAACTCCGACGGACGAGAGTGTCCAGCGTGCTCGAGGAC TAGTCGGAGACGGCCTTGGTGGAATACCGCTAGAAGAAACAGCAGTGGTA CAGTAGTGTCGATGTTGACGATGCCAGCAGCAACAGCGGCAGGTACTCCA ATGGTGGTGTCGGAGGATCATGAACCAAGCAGACCCGCAGTCCTCCGGAT GGCGATTGTTGGCGAAAACGCTGACGAGCTGGGGCTGAGAATAGCAGAGC GATATGGGCTCGTGGTGGCGTCAATGGACGGGCTGATGACGGGCCGAAAG GGAAGGAAGACAGACAGCGTGAAGGCCAAGGCCGCGGCGGAGTGGTTTAC GGAGGAGGGTGATGCTACTGTTGGTGAGGGGAGGAATGGTGAGTGGAAAA TCAGCAGAGAGGCGTTGGCGAGAGCCGATGGTTTAAAAGCCTGATTGAAA AGGCGGCGATGAATGGAATGAATGAAAGTAGTCCCCTTCAACACGCACGC ACATCGTGTCTATTCCAGCTGTCAATTCGTCGTTGACACTCTGACACATG TTGTCTGGTACGGCGTGCTTCGGTGATTCTTTGTTGAACCTCTGTCGCAT TACAGTTGTGGTGTACTCCATGTTGTTTCAGTATTGATGGTTGGCACCAC CGAGCTTAAAGGCTGATGCGACTCTATCGGCACCGAACCTGCCGACTGCT TCTTTTGTTGTTTCTCTGTTGTAGTACGCGCCTTTCGCTGAAGTGGATTG ATGCTTGATGGAGTCAACTGCAGAAGACAATCAAGATACGTATTGCTCTT CTTTTTGTCTCTCTTTATCTTTCTCTGTCTCCGTCTCGCGCGCTCTCGCT CACGCACCATACACACGAACCCGCGACCACATTGCATCCCTCACAGACTG GAGGGCAGGCCGTGTCTTGACCGGCTTTCCGACGACAGCGACACAAGCGG AGCTGCTAGAGAAACAGGGGGTTGATCTCGAGCAGTTGGTTCTCGTCACG CGAGCGGGTGAGGTACCGAGGAAGGCAGGCGAAGAGAACGACAGCGTCAA CGCCAACGAGGAAGAAGAGCAACGTCTTTTGACGGAGCGGTTAGCGGGGA GAGTGGTGAAGCTGGCGGGCCAGCAGGACGTCGACAGCTTCTGCGACTCG GCCACGAGCCTTCTCGCCATCGGCGGAGAACAGTCGGCGAGGGTGGCGAA ATCGTCGCCTCAACGCCCTTTGCCGCCGCCGCCATCGACGATGTTAAGCG ATACCGACATGTGGATGAGCCCATCCGAGCACGCGGCAACGCATGCGGAG GCCACGGAGTTGGGGGCCGTGGGTCCTGAAGCCGATCGGCGGGCGCGTTC GAGGGCCGGCGCGGAGGCCAAGAAAGCGAAGAAGGAGGCTATTCGGCAGA AGAAGAGGATCGCCAACGAAGCGCAGCAGCTCGATACTCCCTTCTACGCG GTCGTGGCCACGGGCGGGCCCAAGGCGCGATTTCGCGCTCCCGTGCCGAT GGTCCCGTCCCGCATCACCGAGCGCCTCTCCTCAGCGGTCTCCCCGGGGG GTGGCGAGAAAGACACTAGCAGCAACACCAGGCTTGAGTTCGGAAGTCTC GAACTCAACAGCCCGGCATCCGACTGTCTGCTTGCGGCGGGCATCACAGA GCCCACAGGCATCCAGAAAGCCGGAATGGGTCCCATCCTGAACGGGGAGA GCGTAATCCTGCACGCTATGACCGGTAGCGGGAAGACGCTGACGTTCCTG TTGCCTCTTATGCAGCGCTGGACGCCCGGGTTGTTTTATCCGGAGGCGGC CAAGGCAGGAGCAAAAACCGGCAAGCGCAGCAGAAGGGGTGATGCTGGGG CGGGCCCTGCGCCTTGGCAGGTGCTGCTGGCGCTTCCAACGCGCGAACTG GCGGTTCAAGTGGCGAGAGAGGTTGTACTCCTCTCCGGCGGGTTGACGGC CTCCGTGGAGCTTCTCGTCGACGCGAGCGTTCTTCACGACCTGTCGAAGG TCACCGCTCCTATAGTGGTGGGGTCCGCCAAGGTTCTCGAGAGGTGCGAG GCGTACGGCCGTGGTTATTATTTTCGGCGGTAGGACGGCAATTGAAGTGA TGCGTGCAGCATTGCGTTTTCGCCTCGAGCACTTGGAGTGTGAAGTTTTT GCGGCGTAAACGTGCTCTTGCCGTGATCTCCTTGCGTCGTGGCAGGGGTG TCCATTGTTCGGTCGTGTCGGTTCATGCCACTAGTGTGGTTCACGAACGA CAGGACCACTACTACGTGAGACGATCAAGCGTACGCATATTCCAGTGGAC GAAGGGCTTCGCCACCATGATTACACGTGCGTTCGGGGGGGAAACTAGCC TCGTGCCATGTGCTACTGCCTCCCGCATGATTGCAACGTTGCATTTCCTC TCACCCCGCGCAACTCTATCCCACCCCACACTCTTGGGCCCGCACGTGTC ATGCAGGCTTATCCGTAAGTCCCACCCTACCGTCCGCAACGACGTGCTGC CGCGCATCAAGTGCATCGTTGTGGACGAGGTCGACAGGCTGGTGGACGTG CTGTCAAAACACGCGCCGGCCAAGGAGGCCGAGAAACGGAAGAAGCACGC GCGCCCCATCGAGGCCCTCCTCGAGAGAGTCCTGTCGGCGAACGGAGAGG CGCAGGTGGGAACGACCACAATGTCGGTTTTTGGTTCGGTTCGGTTCGGT TCCGTTTGCGGTTCGATTGTGTTTTGATTATTTTCCTACAGTGATCGATG CCTTCGGCTTTGTACACCCGGCGTGCACGTGGAATGATTTCTTTTCGGGG AGGTGTCGGCGTTCGGGAAGCCTCGAGCACAAAGCAGCAACCCCAACGCG AGTCGACGTCCAGCCAGCGATCCTTGTTTTTTCTTTCCGCCCTTCCCCTC CTTTGGCTTGACGACCTGTTTTTTTTTGTTGCGGTGCGTGTACACCAAAC CCTGTCTGAAGCTTTCGGGCGCTCGAAATACGCCTGCTGCCCGTACGCAC GCCCTCCTCTATTGGCAGGTCGTGGCCTGCTCGGCGACGATTGGGCGCCC TCTGCGGCGCGAGCTGGGGCACATCGTCCGCCGCGCTTCCTCGATCGGGA CTCTCCCCAGCGCCGCCGGTTATGGCAGTGGCGGCGCTGAGAACGAAGCC GGCGGCAGCAACAGGCGCCACGAGCTCAGGGTCATCCGCGACGCCTTGAC GGAGTCGATGGGCCGAAGCCTCGCGACCGAGCGGGCCGTAGTCATCCCGA ACACGATCAGGCACTACTGTGTACCCCTTAAGGACGGCGACTTCTTCTCG CGGCTGGAGGGGCTGACGGCAGCCGTGCGCGAGCTGCAGCCGCGGCGGCC CTTAATCTTCGTCCCGCCGCACGAGCGCGTCACCGCCGTGGTGGCTCACC TGCGCCGCGCCGGCGGACCCGTCGGGGCGCGAGCCGTGGCCCTGCACGAG GCCATGGGCTTCGTCTCGGACGAGGATTTCGGCGGGGTCCGGGGGCGCCA CGCCTCCGAAGCCATCCAGAAGCACGACGAGCTTGTCGGGCAATTCAAGG TGAGGGGGGCGAATGCGGCAGGAGGTGGAAAAAGAGCGTCGGGCGGTGAC GGCGGCGACGGCGGCCCCGGGAGCGAGATCGGCGCAGCCGAGCGGGGCGG CAGCAGCATCAGCGGGGGAGGGAGCGGCGATCTCCTGGCGGGAGGAGGAG GAGGAGGACGGAGGCGGTCACGGAACGGGGACGGGGACGGGGGCAGCATA GAGGAACCAATGGATGTGCTCGTCACGGGGGAGGACTCGGCGAGAGGGCT CCATTTCGACGGGGTGGACTTTGTGTTCTTGATGCAGAAGCCCAAGAGCC CCGATGAATACGTCCACCTCGCCGGCCGAACCGGCCGGCAGGGAAGAACA GGGACCGTCGTGTCCTTCGTGGATTTCGAGGAGTTCCGGAAGCTCATGGG GTGGTCCAAATCGCTCAAGGTTAACTTCGAGCCGCTGGACATTTTGAACG TGGCGAAACGATGATGGTTTCGAGAGGTTCGTTCGGGCGAACTGCTGGTG GAAGTTATCCCGGGCGCTGTCTCGCGACTTTTGTTGCGTGATCGTTGCAA TAGGTTGCGGTCTCTTTTGTGAAGAACGGTGTGTTCTGTGGGAAACTTTG ATATTTTGGGTTACGGCTCTTTGTACCCATTGCCGAGGGCTTTGGCTTGC GTGGTGCGAGTGTAGGCGGAAGATCACCGCTCGAAGAAGAAAGGAAGATT GTCGCAACGTGTGCGTGTGCCGTTTCTCTCAAGACCTCAGACTGGAGTTT TTTTTTGCTTGTGTGGGAACCTCGTTCCTGCTTTTGTTCGCTGAGGCTTC ATGCCACTCGTGGCGGCTTTCTTGTGGTTTACCAA
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1057:48554..53188+

>mRNA_P-lacustris_contig1057.525.1 ID=mRNA_P-lacustris_contig1057.525.1|Name=mRNA_P-lacustris_contig1057.525.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=5766bp|location=Sequence derived from alignment at P-lacustris_contig1057:48554..53188+ (Pleurocladia lacustris SAG_25_93)
ATGAGACTGGTGACTGCTGCCGGAGGAGTCGTGTTCGCTGCACATCATGT
GGTCGGGTTTTCCGTTCGGCCGTTAGATGCAACCTCGATAGCTCCACGGC
AATCTGCTTTGTTTCAGCAACGTCAAACAGCAGCAACATCAGCAGGGTCA
CTCTCGCCACTGCTGAACTCCGACGGACGAGAGTGTCCAGCGTGCTCGAG
GACTAGTCGGAGACGGCCTTGGTGGAATACCGCTAGAAGAAACAGCAGTG
GTACAGTAGTGTCGATGTTGACGATGCCAGCAGCAACAGCGGCAGGTACT
CCAATGGTGGTGTCGGAGGATCATGAACCAAGCAGACCCGCAGTCCTCCG
GATGGCGATTGTTGGCGAAAACGCTGACGAGCTGGGGCTGAGAATAGCAG
AGCGATATGGGCTCGTGGTGGCGTCAATGGACGGGCTGATGACGGGCCGA
AAGGGAAGGAAGACAGACAGCGTGAAGGCCAAGGCCGCGGCGGAGTGGTT
TACGGAGGAGGGTGATGCTACTGTTGGTGAGGGGAGGAATGATGAGACTG
GTGACTGCTGCCGGAGGAGTCGTGTTCGCTGCACATCATGTGGTCGGGTT
TTCCGTTCGGCCGTTAGATGCAACCTCGATAGCTCCACGGCAATCTGCTT
TGTTTCAGCAACGTCAAACAGCAGCAACATCAGCAGGGTCACTCTCGCCA
CTGCTGAACTCCGACGGACGAGAGTGTCCAGCGTGCTCGAGGACTAGTCG
GAGACGGCCTTGGTGGAATACCGCTAGAAGAAACAGCAGTGGTACAGTAG
TGTCGATGTTGACGATGCCAGCAGCAACAGCGGCAGGTACTCCAATGGTG
GTGTCGGAGGATCATGAACCAAGCAGACCCGCAGTCCTCCGGATGGCGAT
TGTTGGCGAAAACGCTGACGAGCTGGGGCTGAGAATAGCAGAGCGATATG
GGCTCGTGGTGGCGTCAATGGACGGGCTGATGACGGGCCGAAAGGGAAGG
AAGACAGACAGCGTGAAGGCCAAGGCCGCGGCGGAGTGGTTTACGGAGGA
GGGTGATGCTACTGTTGGTGAGGGGAGGAATGACTGGAGGGCAGGCCGTG
TCTTGACCGGCTTTCCGACGACAGCGACACAAGCGGAGCTGCTAGAGAAA
CAGGGGGTTGATCTCGAGCAGTTGGTTCTCGTCACGCGAGCGGGTGAGGT
ACCGAGGAAGGCAGGCGAAGAGAACGACAGCGTCAACGCCAACGAGGAAG
AAGAGCAACGTCTTTTGACGGAGCGGTTAGCGGGGAGAGTGGTGAAGCTG
GCGGGCCAGCAGGACGTCGACAGCTTCTGCGACTCGGCCACGAGCCTTCT
CGCCATCGGCGGAGAACAGTCGGCGAGGGTGGCGAAATCGTCGCCTCAAC
GCCCTTTGCCGCCGCCGCCATCGACGATGTTAAGCGATACCGACATGTGG
ATGAGCCCATCCGAGCACGCGGCAACGCATGCGGAGGCCACGGAGTTGGG
GGCCGTGGGTCCTGAAGCCGATCGGCGGGCGCGTTCGAGGGCCGGCGCGG
AGGCCAAGAAAGCGAAGAAGGAGGCTATTCGGCAGAAGAAGAGGATCGCC
AACGAAGCGCAGCAGCTCGATACTCCCTTCTACGCGGTCGTGGCCACGGG
CGGGCCCAAGGCGCGATTTCGCGCTCCCGTGCCGATGGTCCCGTCCCGCA
TCACCGAGCGCCTCTCCTCAGCGGTCTCCCCGGGGGGTGGCGAGAAAGAC
ACTAGCAGCAACACCAGGCTTGAGTTCGGAAGTCTCGAACTCAACAGCCC
GGCATCCGACTGTCTGCTTGCGGCGGGCATCACAGAGCCCACAGGCATCC
AGAAAGCCGGAATGGGTCCCATCCTGAACGGGGAGAGCGTAATCCTGCAC
GCTATGACCGGTAGCGGGAAGACGCTGACGTTCCTGTTGCCTCTTATGCA
GCGCTGGACGCCCGGGTTGTTTTATCCGGAGGCGGCCAAGGCAGGAGCAA
AAACCGGCAAGCGCAGCAGAAGGGGTGATGCTGGGGCGGGCCCTGCGCCT
TGGCAGGTGCTGCTGGCGCTTCCAACGCGCGAACTGGCGGTTCAAGTGGC
GAGAGAGGTTGTACTCCTCTCCGGCGGGTTGACGGCCTCCGTGGAGCTTC
TCGTCGACGCGAGCGTTCTTCACGACCTGTCGAAGGTCACCGCTCCTATA
GTGGTGGGGTCCGCCAAGGTTCTCGAGAGACTGGAGGGCAGGCCGTGTCT
TGACCGGCTTTCCGACGACAGCGACACAAGCGGAGCTGCTAGAGAAACAG
GGGGTTGATCTCGAGCAGTTGGTTCTCGTCACGCGAGCGGGTGAGGTACC
GAGGAAGGCAGGCGAAGAGAACGACAGCGTCAACGCCAACGAGGAAGAAG
AGCAACGTCTTTTGACGGAGCGGTTAGCGGGGAGAGTGGTGAAGCTGGCG
GGCCAGCAGGACGTCGACAGCTTCTGCGACTCGGCCACGAGCCTTCTCGC
CATCGGCGGAGAACAGTCGGCGAGGGTGGCGAAATCGTCGCCTCAACGCC
CTTTGCCGCCGCCGCCATCGACGATGTTAAGCGATACCGACATGTGGATG
AGCCCATCCGAGCACGCGGCAACGCATGCGGAGGCCACGGAGTTGGGGGC
CGTGGGTCCTGAAGCCGATCGGCGGGCGCGTTCGAGGGCCGGCGCGGAGG
CCAAGAAAGCGAAGAAGGAGGCTATTCGGCAGAAGAAGAGGATCGCCAAC
GAAGCGCAGCAGCTCGATACTCCCTTCTACGCGGTCGTGGCCACGGGCGG
GCCCAAGGCGCGATTTCGCGCTCCCGTGCCGATGGTCCCGTCCCGCATCA
CCGAGCGCCTCTCCTCAGCGGTCTCCCCGGGGGGTGGCGAGAAAGACACT
AGCAGCAACACCAGGCTTGAGTTCGGAAGTCTCGAACTCAACAGCCCGGC
ATCCGACTGTCTGCTTGCGGCGGGCATCACAGAGCCCACAGGCATCCAGA
AAGCCGGAATGGGTCCCATCCTGAACGGGGAGAGCGTAATCCTGCACGCT
ATGACCGGTAGCGGGAAGACGCTGACGTTCCTGTTGCCTCTTATGCAGCG
CTGGACGCCCGGGTTGTTTTATCCGGAGGCGGCCAAGGCAGGAGCAAAAA
CCGGCAAGCGCAGCAGAAGGGGTGATGCTGGGGCGGGCCCTGCGCCTTGG
CAGGTGCTGCTGGCGCTTCCAACGCGCGAACTGGCGGTTCAAGTGGCGAG
AGAGGTTGTACTCCTCTCCGGCGGGTTGACGGCCTCCGTGGAGCTTCTCG
TCGACGCGAGCGTTCTTCACGACCTGTCGAAGGTCACCGCTCCTATAGTG
GTGGGGTCCGCCAAGGTTCTCGAGAGGCTTATCCGTAAGTCCCACCCTAC
CGTCCGCAACGACGTGCTGCCGCGCATCAAGTGCATCGTTGTGGACGAGG
TCGACAGGCTGGTGGACGTGCTGTCAAAACACGCGCCGGCCAAGGAGGCC
GAGAAACGGAAGAAGCACGCGCGCCCCATCGAGGCCCTCCTCGAGAGAGT
CCTGTCGGCGAACGGAGAGGCGCAGGCTTATCCGTAAGTCCCACCCTACC
GTCCGCAACGACGTGCTGCCGCGCATCAAGTGCATCGTTGTGGACGAGGT
CGACAGGCTGGTGGACGTGCTGTCAAAACACGCGCCGGCCAAGGAGGCCG
AGAAACGGAAGAAGCACGCGCGCCCCATCGAGGCCCTCCTCGAGAGAGTC
CTGTCGGCGAACGGAGAGGCGCAGGTCGTGGCCTGCTCGGCGACGATTGG
GCGCCCTCTGCGGCGCGAGCTGGGGCACATCGTCCGCCGCGCTTCCTCGA
TCGGGACTCTCCCCAGCGCCGCCGGTTATGGCAGTGGCGGCGCTGAGAAC
GAAGCCGGCGGCAGCAACAGGCGCCACGAGCTCAGGGTCATCCGCGACGC
CTTGACGGAGTCGATGGGCCGAAGCCTCGCGACCGAGCGGGCCGTAGTCA
TCCCGAACACGATCAGGCACTACTGTGTACCCCTTAAGGACGGCGACTTC
TTCTCGCGGCTGGAGGGGCTGACGGCAGCCGTGCGCGAGCTGCAGCCGCG
GCGGCCCTTAATCTTCGTCCCGCCGCACGAGCGCGTCACCGCCGTGGTGG
CTCACCTGCGCCGCGCCGGCGGACCCGTCGGGGCGCGAGCCGTGGCCCTG
CACGAGGCCATGGGCTTCGTCTCGGACGAGGATTTCGGCGGGGTCCGGGG
GCGCCACGCCTCCGAAGCCATCCAGAAGCACGACGAGCTTGTCGGGCAAT
TCAAGGTGAGGGGGGCGAATGCGGCAGGAGGTGGAAAAAGAGCGTCGGGC
GGTGACGGCGGCGACGGCGGCCCCGGGAGCGAGATCGGCGCAGCCGAGCG
GGGCGGCAGCAGCATCAGCGGGGGAGGGAGCGGCGATCTCCTGGCGGGAG
GAGGAGGAGGAGGACGGAGGCGGTCACGGAACGGGGACGGGGACGGGGGC
AGCATAGAGGAACCAATGGATGTGCTCGTCACGGGGGAGGACTCGGCGAG
AGGGCTCCATTTCGACGGGGTGGACTTTGTGTTCTTGATGCAGAAGCCCA
AGAGCCCCGATGAATACGTCCACCTCGCCGGCCGAACCGGCCGGCAGGGA
AGAACAGGGACCGTCGTGTCCTTCGTGGATTTCGAGGAGTTCCGGAAGCT
CATGGGGTGGTCCAAATCGCTCAAGGTTAACTTCGAGCCGCTGGACATTT
TGAACGTGGCGAAACGATGAGTCGTGGCCTGCTCGGCGACGATTGGGCGC
CCTCTGCGGCGCGAGCTGGGGCACATCGTCCGCCGCGCTTCCTCGATCGG
GACTCTCCCCAGCGCCGCCGGTTATGGCAGTGGCGGCGCTGAGAACGAAG
CCGGCGGCAGCAACAGGCGCCACGAGCTCAGGGTCATCCGCGACGCCTTG
ACGGAGTCGATGGGCCGAAGCCTCGCGACCGAGCGGGCCGTAGTCATCCC
GAACACGATCAGGCACTACTGTGTACCCCTTAAGGACGGCGACTTCTTCT
CGCGGCTGGAGGGGCTGACGGCAGCCGTGCGCGAGCTGCAGCCGCGGCGG
CCCTTAATCTTCGTCCCGCCGCACGAGCGCGTCACCGCCGTGGTGGCTCA
CCTGCGCCGCGCCGGCGGACCCGTCGGGGCGCGAGCCGTGGCCCTGCACG
AGGCCATGGGCTTCGTCTCGGACGAGGATTTCGGCGGGGTCCGGGGGCGC
CACGCCTCCGAAGCCATCCAGAAGCACGACGAGCTTGTCGGGCAATTCAA
GGTGAGGGGGGCGAATGCGGCAGGAGGTGGAAAAAGAGCGTCGGGCGGTG
ACGGCGGCGACGGCGGCCCCGGGAGCGAGATCGGCGCAGCCGAGCGGGGC
GGCAGCAGCATCAGCGGGGGAGGGAGCGGCGATCTCCTGGCGGGAGGAGG
AGGAGGAGGACGGAGGCGGTCACGGAACGGGGACGGGGACGGGGGCAGCA
TAGAGGAACCAATGGATGTGCTCGTCACGGGGGAGGACTCGGCGAGAGGG
CTCCATTTCGACGGGGTGGACTTTGTGTTCTTGATGCAGAAGCCCAAGAG
CCCCGATGAATACGTCCACCTCGCCGGCCGAACCGGCCGGCAGGGAAGAA
CAGGGACCGTCGTGTCCTTCGTGGATTTCGAGGAGTTCCGGAAGCTCATG
GGGTGGTCCAAATCGCTCAAGGTTAACTTCGAGCCGCTGGACATTTTGAA
CGTGGCGAAACGATGA
back to top