mRNA_P-lacustris_contig1056.516.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1056.516.1
Unique NamemRNA_P-lacustris_contig1056.516.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1056.516.1 vs. uniprot
Match: D7FLW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLW4_ECTSI)

HSP 1 Score: 383 bits (984), Expect = 2.600e-118
Identity = 212/401 (52.87%), Postives = 264/401 (65.84%), Query Frame = 3 
Query:  114 RTSAAAALLVLVAFAKVRAETSDTAQEEHAH-------EGSFGSGAVYDMGAGTNSFIVTPAEGTFEDATFAFMVVPTISADMDGLEEAEHEAEGAWEGFLESTAEPTVLASGDLATPSVDVVYQISLEDPLAVVPFDISTAGAYAVFVEHGELPTALVSPDGEILVAGYVEEPAGEEXXXXXXEINATGTKWMSALAASVIVSLCSLVGIIVVIHRNVADGIDLSHAFTFASGALITASLLHLIPEALEGLESKYHELHDLGLYAGLSVMGGMSIGIVIHALLGSDHSTYGPTVAIIKDEKAAVAG-------TVQSSTDVTQPPSPTKSNAESLHDLIKTRDGRALCDIRGLRPVCWNVIIGDLVHNFADGVAIGAAFLTCSSTIGWTVTATIVIHELP 1274
            R   A ALL L+A A      SD     H+        EG F + AVYD+ AGTNS    P  G+FE+ TFAFMVVP  SAD+DGLE AE +AE AW+ +     + TVLASG+ ATPS DVVYQ++LEDPL +VP D++ AGAYAVF+EHG         +G              E         AT  KW +AL AS++VS CS  GI+VV  ++VA+ IDLSHAF FASGAL+TA+LLH+IPEALEGLE  Y  LHDLGLYAGL+VMGGMS+GIV+HALL S HS + P  +      A  AG           +++ T PPSP +SN+++L  LI  R G++L D++GL PVCWNVI GDLVHNFADGVAIGAAFL+CS+T+GWTV A++V+HE+P
Sbjct:    3 RVLNATALLCLLACAAAHTSHSDHDHGSHSXXXXXXEGEGHFEAAAVYDVEAGTNSLAAYPGGGSFEEETFAFMVVPAASADLDGLEGAEEDAEAAWDEYTSGAEDATVLASGESATPSADVVYQVTLEDPLVLVPVDVTAAGAYAVFLEHGS------DEEGXXXXXXXXXXXXXXETG------TATAGKWGNALVASLVVSACSFAGIVVVASKHVANNIDLSHAFVFASGALLTAALLHIIPEALEGLEESYGSLHDLGLYAGLAVMGGMSLGIVLHALLESGHS-HSPGESXXXXXXAVEAGGGGAKASAYTGTSEATLPPSPVESNSDNLQALISARKGKSLLDVKGLEPVCWNVIAGDLVHNFADGVAIGAAFLSCSTTMGWTVAASVVLHEVP 390
[Close]
BLAST of mRNA_P-lacustris_contig1056.516.1 vs. uniprot
Match: A0A6H5L662_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L662_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 6.090e-110
Identity = 212/430 (49.30%), Postives = 275/430 (63.95%), Query Frame = 3 
Query:  111 MRTSAAAALLVLVAFAKVRAETS--DTAQEEHAHEGSFGSGAVYDMGAGTNSFIVTPAEGTFEDATFAFMVVPTISADMDGLEEAEHEAEGAWEGFLESTAEPTVLASGDLATPSVDVVYQISLEDPLAVVPFDISTAGAYAVFVEHG--ELPTALVSPDGEILVAGYVEEPAGEEXXXXXXEINATGTKWMSALAASVIVSLCSLVGIIVVIHRNVADGIDLSHAFTFASGALITASLLHLIPEALEGLESKYHELHDLGLYAGLSVMGGMSIGIVIHALLGSDHS-------TYGPTVAIIK--------------------------DEKAAVAG-----TVQSSTDVTQPPSPTKSNAESLHDLIKTRDGRALCDIRGLRPVCWNVIIGDLVHNFADGVAIGAAFLTCSSTIGWTVTATIVIHELP 1274
            MR  +A A L+L   A      S  D  +  HA +G F   AVYD+  GTNSFI  PAEG FE  T AFMVV   SAD +GL  AE +AE AW+ +     + TVLA G+ ATPS  VVYQ++LEDPL +V  +++ AGAYAVF+EHG  E+   L SP G  +V           XXXXXX  +A+GT+W++ L AS +VS+CS  G++VV ++ VA  I LSHAF FASGAL+TA+L+H+IPEA+EGL+S Y  LHDLGLYAGL+V+GG+S+ +VIH L+ S HS       ++G     ++                          D+ +A  G      VQ   DVTQPPSP +S+ ++L  LI  R GR+L D++GL+PVCWNV+IGDLVHNFADG+ IGAAFLTCS+T+GWTVTA+ V+HELP
Sbjct:    1 MRCLSAVAALLLACVAPEATSHSGHDYDESSHAEDGHFEVSAVYDVEPGTNSFIAIPAEGRFEQDTLAFMVVLAASADTEGLAGAEEDAEAAWDAYTSGAEDATVLAPGEPATPSTVVVYQVALEDPLVLVQVEVTIAGAYAVFLEHGAEEVGIVLASPSG--VVXXXXXXXXXXXXXXXXXSGSASGTQWVNGLVASFVVSVCSFAGLLVVANKRVAYSIGLSHAFIFASGALLTAALVHIIPEAMEGLDSSYDNLHDLGLYAGLTVLGGLSVSVVIHGLMESGHSHSPHEGHSHGGGTETVRPGGGHGHHARVSDGAGTTMPLGMAEGDKVSAWPGGNSPHAVQIQADVTQPPSPAESSTDNLRALIAERAGRSLLDVKGLQPVCWNVVIGDLVHNFADGLTIGAAFLTCSATVGWTVTASAVLHELP 428
[Close]
BLAST of mRNA_P-lacustris_contig1056.516.1 vs. uniprot
Match: A0A6H5KN39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN39_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 3.460e-80
Identity = 166/365 (45.48%), Postives = 232/365 (63.56%), Query Frame = 3 
Query:  207 EGSFGSGAVYDMG-AGTNSFIVTPAEGTFEDATFAFMVVPTISADMDGLEEAEHEAEGAWEGFLESTAEPTVLASGDLATPSVDVVYQISLEDPLAVVPFDISTAGAYAVFVEHG--ELPTALVSPDGEILVAGY---VEEPAGEEXXXXXXEINAT--GTKWMSALAASVIVSLCSLVGIIVVIHRNVADGIDLSHAFTFASGALITASLLHLIPEALEGLESKYHELHDLGLYAGLSVMGGMSIGIVIHALLGSDHSTYGPTVAIIKDEKAAVAGTVQSSTDVTQPPSPTKSNA-ESLHDLIKTRDGRALCDIRGLRPVCWNVIIGDLVHNFADGVAIGAAFLTCSSTIGWTVTATIVIHELP 1274
            +G F + AVY +  AGT+S I  P E  FE  T AFM+VP  SAD +GLE AE +AE AW+ F++   + TVLA G+ A P   VVYQ +L++ + VVP +++ AGAYA+ +EHG  E+ TALVSP G  + A     +EE     XXXXXX    T  G KW  A+ A+ I    S  GI ++I + +A+GIDLSHA+ FA+GA++TA+L+H+IPE+ E  E     LHDLG++ G++++ G++  I+I A+  + HS  G          A V G      D +Q   PT     E+L +L++ R GRAL D +GL+P+CWNVI+GD VH+F  G  IGAAFL+C ST+GWT+TA+ +IHE+P
Sbjct:   37 DGHFEAAAVYSLEEAGTHSVIAVPGEA-FE-GTLAFMLVPAASADDEGLEGAEEDAEAAWDAFMDGEEDATVLAFGETAIPDATVVYQTTLDESIVVVPAEVTDAGAYALLLEHGGGEVSTALVSPSGTAVAASVSEGMEEXXXXXXXXXXXXXGDTVSGAKWAQAMVATCIACFASFAGIFLLISKRIANGIDLSHAYMFATGAILTAALIHIIPESFERFEDAELGLHDLGIHTGVTMLAGITASIIIRAVCTAGHSHTGAPAT------AKVVGA-----DGSQSRGPTTPTIPENLWELVQQRKGRALFDFKGLKPICWNVIVGDAVHSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVP 388
[Close]
BLAST of mRNA_P-lacustris_contig1056.516.1 vs. uniprot
Match: D7FRW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW4_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 8.180e-80
Identity = 157/359 (43.73%), Postives = 230/359 (64.07%), Query Frame = 3 
Query:  210 GSFGSGAVYDMG-AGTNSFIVTPAEGTFEDATFAFMVVPTISADMDGLEEAEHEAEGAWEGFLESTAEPTVLASGDLATPSVDVVYQISLEDPLAVVPFDISTAGAYAVFVEHG--ELPTALVSPDGEILVAGYVEEPAGEEXXXXXXEINATGTKWMSALAASVIVSLCSLVGIIVVIHRNVADGIDLSHAFTFASGALITASLLHLIPEALEGLESKYHELHDLGLYAGLSVMGGMSIGIVIHALLGSDHSTYG-PTVAIIKDEKAAVAGTVQSSTDVTQPPSPTKSNAESLHDLIKTRDGRALCDIRGLRPVCWNVIIGDLVHNFADGVAIGAAFLTCSSTIGWTVTATIVIHELP 1274
            G F + AVY +  AGT+S I  P E  FE  T AFM+VP  SAD +GL  AE +AE AW+ F++   + TVLASG+   P   VVYQ +L++ + VVP +++ AGAYA+ +EHG  E+ TAL+SP G   VA  V E   EE       ++  G KW  A+ A+ I    S VGI ++I++ +A+G+DLSHA+ FA+GA++TASL+H++PE+ E  E     L+DLG++ G++++ G++  ++I A+  + HS  G P  A + +   A  G  +  T  T P        ++L +L++ R GRAL D +GL+P+CWNVI+GD VH+F  G  IGAAFL+C ST+GWT+TA+ +IHE+P
Sbjct:   50 GHFEAAAVYVLEEAGTHSVIAVPGED-FE-GTLAFMLVPAASADYEGLAGAEEDAEAAWDAFMDGEEDATVLASGETVIPDATVVYQTTLDESIIVVPAEVTDAGAYALLLEHGGGEVSTALISPLGTA-VAASVSEFMDEEEEEEGDTVS--GAKWAQAIVATCIACFTSFVGIFLLINKRIANGVDLSHAYMFATGAILTASLIHIVPESFERFEDSELGLYDLGIHTGVTMLAGITASVIIRAVCTAGHSHTGAPATAKVVE---ADGGQSRGPTTPTIP--------DNLLELVEQRKGRALFDFKGLKPICWNVIVGDAVHSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVP 392
[Close]
BLAST of mRNA_P-lacustris_contig1056.516.1 vs. uniprot
Match: D8LNP7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP7_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 5.760e-62
Identity = 132/267 (49.44%), Postives = 174/267 (65.17%), Query Frame = 3 
Query:  492 VVPFDISTAGAYAVFVEHG--ELPTALVSPDGEILVAGYVEEPAGEEXXXXXXEI----NATGTKWMSALAASVIVSLCSLVGIIVVIHRNVADGIDLSHAFTFASGALITASLLHLIPEALEGLESKYHELHDLGLYAGLSVMGGMSIGIVIHALLGSDHSTYGPTVAIIKDEKAAVAGTVQSSTDVTQPPSPTKSNAESLHDLIKTRDGRALCDIRGLRPVCWNVIIGDLVHNFADGVAIGAAFLTCSSTIGWTVTATIVIHELP 1274
            ++P D+   GAYA+  EHG  E+ TALVS  G++LV G  EE  G+EXXXXXX      +AT  +W +A+ A+VIVSLCS  GI+ +I++ VA+ I LSH FTFASGAL+TASLLH++PE+LEG+ ++Y  LHD GL+AGL+++GG+   I+IHALL S H                           T P             L  T   R+L D++GL+PVCWNVI G+LVHNFADGV IGAAFLTC S++GWT+TA+ V+HE+P
Sbjct:    2 MIPVDVVDTGAYALLFEHGSDEVGTALVSESGDVLV-GTSEE--GDEXXXXXXXXXXXXSATAAQWGNAILATVIVSLCSFTGILTIINQKVANAIGLSHTFTFASGALLTASLLHIVPESLEGIAAEYDHLHDAGLWAGLAILGGIGFSILIHALLESGHXXXXXXXXXXXXXXXXXXXXXXXXXAGTAP-------------LALTDKERSLFDLKGLKPVCWNVIAGELVHNFADGVTIGAAFLTCGSSMGWTITASTVLHEIP 252
[Close]
BLAST of mRNA_P-lacustris_contig1056.516.1 vs. uniprot
Match: D7FLV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV2_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 8.410e-59
Identity = 117/226 (51.77%), Postives = 147/226 (65.04%), Query Frame = 3 
Query:  711 SLVGIIVVIHRNVADGIDLSHAFTFASGALITASLLHLIPEALEGLESKYHELHDLGLYAGLSVMGGMSIGIVIHALLGSDHS---------------------------------TYGPTVAIIKDEKAAVAG-----TVQSSTDVTQPPSPTKSNAESLHDLIKTRDGRALCDIRGLRPVCWNVIIGDLVHNFADGVAIGAAFLTCSSTIGWTVTATIVIHELP 1274
            S  G++VV+++ VA  I LSHAF FASGAL+TA+LLH+IPEA+EGL+S Y  LHDLGLYA L+V+ G+ + IVIH L+ S HS                                 T  P      D+ +A  G      VQ   DVTQPPSP +S+ ++L  LI  R+GR+L D++GL+PVCWNV+IGDLVHNFADGV IGAAFLTCS+TIGWTVTA+ V+HELP
Sbjct:    5 SFAGLLVVVNKRVAYSIGLSHAFIFASGALLTAALLHIIPEAMEGLDSSYDNLHDLGLYASLTVLSGLFVSIVIHGLMESGHSHSPNEAHSHGGGEETVRPGGGNGHHARVSDDASTMMPLGLAEGDKVSAWPGGNSPQAVQIQADVTQPPSPAESSTDNLRALIAEREGRSLLDVKGLQPVCWNVVIGDLVHNFADGVTIGAAFLTCSATIGWTVTASAVLHELP 230
[Close]
BLAST of mRNA_P-lacustris_contig1056.516.1 vs. uniprot
Match: A0A6V1U7C3_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U7C3_HETAK)

HSP 1 Score: 112 bits (280), Expect = 6.570e-22
Identity = 107/393 (27.23%), Postives = 176/393 (44.78%), Query Frame = 3 
Query:  282 GTFEDATFAFMVVPTISADMDGLEEAE-HEAEGAWEGFLESTAEPTVLASGDLATPSVD---VVYQISLEDPLAVVPFDISTAGAYAVFVEHG--ELPTALVSPDGEILVAGYVEEPAGEEXXXXXX-----EINATGTKWMSALAASVIVSLCSLVGIIVV-IHRNVAD---GIDLSHAFTFASGALITASLLHLIPEALEGLESKYHELHDLGLYAGLSVMGGMSIGIVIHALLGSDHSTYGPTVAI-IKDEKAAVA--GTVQSST---DVTQ-----------PPSPTKSNAESLHDLI--------------------KTRDGRALCD----------IRGLRPVCWNVIIGDLVHNFADGVAIGAAFLTCSSTIGWTVTATIVIHELP 1274
            G + + + +   V     D  GLEEAE H AE       ++  E   +++G+  T   D   +   +  E+   V  F+   A  YA+F +H   EL   L    G  LVA   E    +   XXXX     E+  + T W   + A+V+    ++VG+++  + R + D    I +  A  F SGAL++A+++HLIPE    +ES + +   LG  AGL+++GG+   +++H  +   H+         +K+E+AAVA   T ++S    DV +           P +      +S  D                      + R GR+             +RG+RP  WN+++GD + N  DG+ I  AF  C S++GW V   ++ HE+P
Sbjct:   51 GDYSEESLSVFFVAVDDTDAHGLEEAEDHLAE-------DNDHEAVYVSNGNGLTLRQDELLLTLVLDNENDETVFTFETLDASGYALFFQHSPDELDFTLKDASGTTLVAELSESSTEDHDHXXXXXXXXDELEVSSTVWGLVIGANVLAGAAAMVGLVLFSLMRGMGDRTKAIAMQLATAFGSGALLSAAIVHLIPEGYALIES-FVDGEQLGTNAGLTILGGLMFSLILHMAIQHKHAAVDAEPGCSVKEERAAVAPTSTFEASPGGDDVVEMALEAEAVEGPPEAQVHVEGDSCDDECGLAATNEVGDCNDCAEEGGGRLRQGRSAVKLLAALPRVGPVRGVRPQAWNLVLGDCICNGLDGMVIAVAFAGCDSSMGWIVFGAVMSHEIP 435
[Close]
BLAST of mRNA_P-lacustris_contig1056.516.1 vs. uniprot
Match: A0A6H5K199_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K199_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.080e-21
Identity = 64/150 (42.67%), Postives = 84/150 (56.00%), Query Frame = 3 
Query:  744 NVADGIDLSHAFTFASGALITASLLHLIPEALEGLESKYHELHDLGLYAGLSVMGGMSIGIVIHALLGSDHSTYGPTVAIIKDEKAAVAGTVQSSTDVTQPPS-PTKSNAESLHDLIKTRDGRALCDIRGLRPVCWNVIIGDLVHNFADG 1190
             VA  I LSH FTFAS AL+T  LLH+IPE+LEG+ +K+  LHD GL+AG +++      I+IHAL+ S H                           T P +   K    +L  L+  R GR+L D++GL+ VCWNVI G+LV NFADG
Sbjct:   12 KVAHAIGLSHTFTFASDALLTTFLLHIIPESLEGIVAKHDHLHDAGLWAGPAILDRTGFSILIHALMESGHXXXXXXXXXXXXXXXXXXXXXXXXXAGTAPLALKGKVTPGNLWALVSERQGRSLFDLKGLQLVCWNVIAGELVRNFADG 161
[Close]
BLAST of mRNA_P-lacustris_contig1056.516.1 vs. uniprot
Match: K3WD58_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WD58_GLOUD)

HSP 1 Score: 100 bits (249), Expect = 3.890e-18
Identity = 109/442 (24.66%), Postives = 194/442 (43.89%), Query Frame = 3 
Query:  102 GVKMRTSAAAALLVLVAFAKVRAETSDTAQEEHAHEGS-----FGSGAVYDMGAGTNSFIVTPA-EGTFEDATFAFMVVPTISADMDGLEEAEHEAEGAWEGFLESTAEPTVLASGDLAT----------PSVDVVYQI--SLEDPL--AVVPFDISTAGAYAVFVEHGELPTALVSPDGEILVAGYVEEPAGEEXXXXXXEINATGTKWMSALAASVIVSLCSLVGIIVVIHRNVADGIDLSHAFTFASGALITASLLHLIPEALEGLESKYHELHDLGLYA-GLSVMGGMSIGIVI----HALL---GSDHSTY-----------------------GPTVAIIKDEKAAVAGTVQSSTDVTQPPSPTKSNAESLHDLIKTRDGRALCDIRGLRPVCWNVIIGDLVHNFADGVAIGAAFLTCSSTIGWTVTATIVIHELP 1274
            G++++T +   LL LV+ A +   TS  + +  A E S     + +  +++  A   +     A +   E+    F ++   S +    + A H+AE  +  F         + +G   T           S DV+Y++  S E P   A+VP  ++TAGA+ +  +HG    ++   D       ++E  AG +      E ++    W+  + AS+++SL S VG+I++          + +  +FA+G L+   + HL PE      S+Y  L D+G +  G+ V+GG++  + +    H LL   G+DH  +                       G T + ++  +AA    V  S  +T     + ++   L+    T     +  +  + PV W   IGD  H F DGV +  AF +CS+++GW V   IV+HE+P
Sbjct:    2 GLQLKTLSLLLLLALVSAAWMPLATSQHSHDHEAAEESSTASPWETATIWEFAADNYTLRFCAANDEVVEEGGMIFELLALPSTEESDADAAMHQAETIFNTFSSGQVLHQTVTTGTTLTMKTISRNSSASSQDVLYRVEFSAEQPCVDAIVP--VTTAGAFMLLTQHGGDEVSVEVMDSTNQGVSFLECHAGCDNEEE--ESDSKSGSWVGPIVASLVISLTSFVGVIILSFGKSRIESIVEYMTSFAAGCLLGVVVFHLYPEG-----SEY--LGDVGEWVMGVWVLGGIAFSMAVESGVHMLLSSFGADHHDHAHGGXXXXXXXXXXXXXGEDAEKGLTHSSLQQPRAAEGNYV--SHPLTPDAHHSHNDDPKLNHQSLTFSETYIKSLWFVEPVAWITAIGDFFHAFTDGVVLAVAFKSCSTSLGWAVALGIVLHEVP 430
[Close]
BLAST of mRNA_P-lacustris_contig1056.516.1 vs. uniprot
Match: A0A5D6YCB8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCB8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.760e-17
Identity = 103/417 (24.70%), Postives = 180/417 (43.17%), Query Frame = 3 
Query:  111 MRTSAAAALLVL-VAFAKVRAETSDTAQEEHAHEGSFGSGAVYDMGAGTNSFIV--TPAEGTFEDATFAFMVVPTISA-DMDGLEEAEHEAE-----GAWEGFLESTAEPTVLASGDLATPSVDVVYQISLE-DPLAV-VPFDISTAGAYAVFVEHGELPTALVSPDGEILVAGYVEEPAGEEXXXXXXEINATGTKWMSALAASVIVSLCSLVGIIVV-IHRNVADGIDLSHAFTFASGALITASLLHLIPEALEGLESKYHELHDLGLYAGLSVMGGMSIGI--VIHALLGSDHSTYGPTVAIIKD------------EKAAVAGTVQSSTD-VTQPPSPTKSNAESLHDLIKTRD--GRALCDIRGLRPVCWNVIIGDLVHNFADGVAIGAAFLTCSSTIGWTVTATIVIHELP 1274
            ++T A AA+LV    +         +A +  A    F S  +YD+ A T +  V  T A+   E     F ++P  S+ D D    A H A+      + E   ++    T LA    A+ + DV+Y+     D L V     ++  G   VF EHG    ++   D        ++  +G E        +A    W   + AS+++SL S VG++V+ + ++  + + + +  +FA+G L+   + HL PE  E L      +  + + AG++    +  G+  V+ A     H  +G                    EK     ++Q+  + +  P +PT +   +  D    +    R +  ++ + PV W   +GD  H F DGV +  AF +CSS++GW V   +V+HE+P
Sbjct:    8 IQTLALAAVLVTSTTYXXXXXXXETSATDADATSSPFESSVMYDLQASTYALKVCATSADVATEHGGMIFALLPLASSGDSDASAAAAHAAKIFTAFASDEVVHKNVKRNTTLAFKTNAS-APDVLYRAVFSGDQLCVEAALPVAATGVAMVFAEHGADEVSVELFDASAQPVAVLKCHSGCEDHEAEHAGDAPSNSWWGPVGASLVISLTSFVGVVVLGLSQHRIESV-VEYMTSFAAGCLLGVVVFHLYPEGSEYLGDLGEWVMGVWVLAGVAFSMAIESGVHMVLSAFGADHHHAHGGXXXXXXSHHHLVQPNPDAAEKGLGPVSLQAGPEYIAHPTTPTAAVPAASSDAKPPQSFSERYIASLKYVEPVAWITAVGDFFHAFTDGVVLAVAFKSCSSSLGWAVALGVVLHEVP 422
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1056.516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLW4_ECTSI2.600e-11852.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L662_9PHAE6.090e-11049.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN39_9PHAE3.460e-8045.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRW4_ECTSI8.180e-8043.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNP7_ECTSI5.760e-6249.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLV2_ECTSI8.410e-5951.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1U7C3_HETAK6.570e-2227.23Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A6H5K199_9PHAE1.080e-2142.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K3WD58_GLOUD3.890e-1824.66Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6YCB8_9STRA4.760e-1724.70Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1056contigP-lacustris_contig1056:6140..14973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.6
Seed ortholog evalue1.1e-103
Seed eggNOG ortholog2880.D7FLW4
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.cellular zinc ion homeostasis
EggNOG OGsCOG0428@1,KOG2693@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size3223
Cds size1191
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1056.516.1prot_P-lacustris_contig1056.516.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1056 8403..14863 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815325.8530138-UTR-P-lacustris_contig1056:6139..80351622815325.8530138-UTR-P-lacustris_contig1056:6139..8035Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1056 6140..8035 -
1693493477.6918585-UTR-P-lacustris_contig1056:6139..80351693493477.6918585-UTR-P-lacustris_contig1056:6139..8035Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1056 6140..8035 -
1622815325.8633857-UTR-P-lacustris_contig1056:8376..84021622815325.8633857-UTR-P-lacustris_contig1056:8376..8402Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1056 8377..8402 -
1693493477.7051456-UTR-P-lacustris_contig1056:8376..84021693493477.7051456-UTR-P-lacustris_contig1056:8376..8402Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1056 8377..8402 -
1622815325.9120889-UTR-P-lacustris_contig1056:14863..149731622815325.9120889-UTR-P-lacustris_contig1056:14863..14973Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1056 14864..14973 -
1693493477.7533488-UTR-P-lacustris_contig1056:14863..149731693493477.7533488-UTR-P-lacustris_contig1056:14863..14973Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1056 14864..14973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815325.8737898-CDS-P-lacustris_contig1056:8402..89911622815325.8737898-CDS-P-lacustris_contig1056:8402..8991Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1056 8403..8991 -
1693493477.7171233-CDS-P-lacustris_contig1056:8402..89911693493477.7171233-CDS-P-lacustris_contig1056:8402..8991Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1056 8403..8991 -
1622815325.8891444-CDS-P-lacustris_contig1056:9729..100631622815325.8891444-CDS-P-lacustris_contig1056:9729..10063Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1056 9730..10063 -
1693493477.728008-CDS-P-lacustris_contig1056:9729..100631693493477.728008-CDS-P-lacustris_contig1056:9729..10063Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1056 9730..10063 -
1622815325.902141-CDS-P-lacustris_contig1056:14595..148631622815325.902141-CDS-P-lacustris_contig1056:14595..14863Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1056 14596..14863 -
1693493477.7407844-CDS-P-lacustris_contig1056:14595..148631693493477.7407844-CDS-P-lacustris_contig1056:14595..14863Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1056 14596..14863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1056.516.1

>prot_P-lacustris_contig1056.516.1 ID=prot_P-lacustris_contig1056.516.1|Name=mRNA_P-lacustris_contig1056.516.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=397bp
MRTSAAAALLVLVAFAKVRAETSDTAQEEHAHEGSFGSGAVYDMGAGTNS
FIVTPAEGTFEDATFAFMVVPTISADMDGLEEAEHEAEGAWEGFLESTAE
PTVLASGDLATPSVDVVYQISLEDPLAVVPFDISTAGAYAVFVEHGELPT
ALVSPDGEILVAGYVEEPAGEEEEEEEEEINATGTKWMSALAASVIVSLC
SLVGIIVVIHRNVADGIDLSHAFTFASGALITASLLHLIPEALEGLESKY
HELHDLGLYAGLSVMGGMSIGIVIHALLGSDHSTYGPTVAIIKDEKAAVA
GTVQSSTDVTQPPSPTKSNAESLHDLIKTRDGRALCDIRGLRPVCWNVII
GDLVHNFADGVAIGAAFLTCSSTIGWTVTATIVIHELPTSWPTSWR*
back to top

mRNA from alignment at P-lacustris_contig1056:6140..14973-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1056.516.1 ID=mRNA_P-lacustris_contig1056.516.1|Name=mRNA_P-lacustris_contig1056.516.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=8834bp|location=Sequence derived from alignment at P-lacustris_contig1056:6140..14973- (Pleurocladia lacustris SAG_25_93)
GTTGCTGTCGGCACGCGCCTCCCTCTCAACCAACATGCAACCAAGCACCA
ACAACACTCACTTTCTTTCGTGACAACTTACACTTTACAAACCCTTGCGG
CGGCGTCAAGATGAGGACCTCCGCGGCAGCCGCGCTGTTGGTGTTGGTGG
CGTTTGCTAAGGTGCGTGCAGAAACGAGCGATACGGCCCAAGAGGAGCAC
GCGCACGAGGGTAGCTTTGGATCCGGTGCGGTGTATGACATGGGAGCAGG
GACCAACTCGTTCATCGTCACACCAGCGGAGGGAACCTTCGAGGACGCAA
CCTTCGCGTTTATGGTAGTCCCCACAATTTCTGCCGACATGGATGGCTTG
GAGGAAGCTGAGCACGAGGCCGAGGGTGGTAAGTGGCGCAGTTCTCTTGG
ATTACTCGGAGTATATATATTCTAATCCGTGTTCTAAGTCTCAGGATGTG
CCCCACCGCCTTGAGTGGGCGGTGGGGCCAGAGGGGCCAGAAGGTGTTTG
ACATGAAAAACGTAGGCGTGGTGCGGAAGTAAACACGAAGAAATAAGATA
TTAACGTGGAGGGAAAAACTACTGTAATCAAGACATGGCCATGATTGATT
GATTGGATTTTACCGACACGTAAATAAATATACGTACGTGTTGGTTGCGT
GAGAAAGAGACAGCTGCCGTGGTATTGAACCCAAATGCCCCGGCTTGGAC
ACCGGGACAGGGCAGCAGAAGAGAGCACGGAGAGGGTGGCGGAGTGACTG
CACACCGTGTGGGTATGCACTATTGAGAGAGGGATGGAAAGAGTCAAGAG
CTGGAGGGCCACGCCACTATGATCCCGTCGCTGACGCCACTACGAGTCGC
TAGACTCCACGGGTTCGCTATGCGGCAGGGTTCTCTTCATGTATGTGTGG
TGTGGAGGACACACCGGATCCGACCTCTCGTGAGAGAGGTGGGACGGGTA
CGAAACGGGAGTGAGAGCACGGTGCGAGGAAATAGGTCCGCCCTCAGCTG
GATTCCTTGCCCGTACCGGCTCTCAAATCTGACACAGCGAGTCAGGTCCC
AGAACTGGTTCGGAGAACCATGGGAAATATCTGACAGGTTATCTGAGGGA
ACCTGACAATCTACGAGGCCTTCAATAGTGCCATTCACATATATATGTGA
ATGTAAAGTAGTATACTCAACATAATAACAAAATATATATATACACCGCA
CACCAGTTCCACCGCACATCCCAGACCCCAGACGTGAGACTGCCCATCTC
TAGAAATGAGCCAGAGCATAGACGAAATCATGGACGAGGAGATGATTAGA
TGTTGAGCCAATAGGTTCTGGCAACGATAGCGAATCGCAAGACGATGATT
CAGTCGTCATGGTCGAGGCTGCCCAAGAAGAAAACAGCGAGGAAAAATGT
GCGAACTCTGCTGAAAAGGATGGTGGTGGTGGACCATTGGATTCCAATGG
TCCACCACCTGACGGGTGTGCGTGGGTCTCCACTCTCCAGAGTCTCTCCA
CGCCTCTGCAGGTGTAAAGGCCAAATACCCTCATTTTCAATGACTTGCGG
AGGCGTTATCCCGTTTCACCTGGTATAACCGGGTATCCGGTTAACCGGGT
GAAACGGTGCTGAAAATACCCGGGTATTACCGGTTTTTGTTTTTTCAGAA
TAACACCTCCTTTCCGGTTTTCGGTTTTTTTATTTTGCCCCCCGGTGCCC
ACCTCTAGTTGCATGACATGGTCCCCGCGCCGCGACCACTACCGACTCCT
GCGGACGACACACCACCGGTTGCTCCTGCGAGTTATTGGGTACCGGCCCA
AGCGGGGCGCCTATCGGCAGCTGTCATATGCCCAGGCGCTGAAGAGGTTC
GGCGGCCAGAGCGTGGAAGCCACTGTCCGTCAGCGGCGCCTGCTGTTCGC
GGGGGCTTTAGCAAGGCAGCCGGACGGGCGACTCCCGAAGCGACTGATGT
TCGGCGAGTTGGGGGAGAACCCGAGCAGGGGATGCCCCGAGCAGAACTGG
CAGGCGTGCCTTACGGACGACTTCAAGGCGTTTGGTGCCACGCACGGCTC
CACGGTCGACAAGCCGTGTGTCTTCGGAGGCCCGAAATTAGTTTGGATGG
AGGCAGCGAAAGTGAAGAGGGGTGTACCTTGTCATTCGGGGGTGCTGCAG
GGAGCGGAGATGTTTATGGCAGCATGGCACAAGCACCAAGAGAAGGCTAG
CCACCAACGAGCGAATAAGCGAGACCACGGGCGGCCTAGAAATGCGGCAC
CAATCAACGGGACGGGAGGGAGGCGGAGGAAAACGGCGAGGGAAAAAAGC
ACGGGAGAAGAGGCGGACCGGGTGGCGCGCCATTTTACGCACTGATTATC
CGTGACTTTTCAATTGTTCCCCCTCCCCCTGTCGCTGCGCCAGTGCACCA
CCCCCCCCAGGAATTACGATGTGCCTTATTTCCTATGTGGTTATGTTTGC
TTCTCTGCGTGCTGCTGGTATTTTGGTATTATTTTCCCTTTTCCTATAAC
TTTCGTTTTCCATATTTTCCTTTTCTTTGTCCACCCCCCTCGCAGCATAT
TATTTGCGTTTTAATTGGTGGGGAGGACTCGATCTATATGGTTGCCTGAC
CGGGGAGAACCCGGCACGGAACACCCCGGCATTATGGGGGTACCAAGATA
GAATCAGAGGGTGGATACTCCGGTTAGTGATGATTGGCGTTCCAGTTCTT
ATTTCACCTCACATCGCGTGTAGAGGGGAGCGGAGGGCTTCAAAACTACT
AGACTATATAATTCTTGATTCCTGGTTTTTTTATTGCTTGTATTTCTATC
GCTCTGCTAACCCCTCAGGACTATTTTATTTCAGTACACTCGGAGTACCT
TGTTACGTAAGTTAGCCTGTGACCACGGGAATTGACCGCGTCACGTGTTC
GATTAGCACGGAGAGATTGGGACAGAAAGGTACTGGATAGAACGACCGGG
AGGGTTTGTAATGTGAAGACAACAACAACAACAACAACAACAACAACAAC
AACCCGCAAATTTGATTTTTTTTTCACCTCATGGGGATTCGAACTCACGA
CTTGGCTGCTACATGGCTTCGAGGTTACCACTAGACCACCGGGGCGACCA
GTGGAAAGCAAGTATTCATTTAATTCGTGAGTAATCACAATTAATTCGAT
TCAATTCGACGAGGGAAAGGGACAGCTGAACCCTTCTCGCAATGAAAGTC
AAGGCATGTACCGCAGGAGGGCCGGTGGGAGGCATCAGGAGAGGAACCCT
TATTTGTGACCCCGGCTGGGTGCCACCCTCCACATCGCCGAAAGGTGTAG
AGAAGGCTTGCATCCAGAATTGATGGGGTGAAAAAAAAAAGTTATTTGAT
CAACCAAGCTGCTTAGCACCCGCACACCATATTTTGGTTTGCCTATGTTG
GGAGTTTGTTTCTGGTTTGTATTTGTTGGTTGACGTCTCATCTATTCTGT
GGGAGCTAGGCTCTACACCTTTCGGGAGTTGATATAGGCGCGTGGATCAG
GGGGGGCACGCGGGAGGAAATCCATGTTTCAGTGCTTGTGTGAAAGCGAT
ACCAGCGGCCACCCCGTCCTCCTCCACTCTTTTGTAGAACGATGCCACGT
GAGCGTTTTGCAATGGACGTTGGTGGCGAGACCATGGGCGGATGACTGAC
TGTCGTTCGTCGTGCTCCTCAATTAACACACACTTTTCGTCCAAAACACT
CTGGTAACCTCACACTTCTTCCCCCCGCCACAAAACACAAAATGAAAAAA
AAAAAAAAGTTGTACATATTTCGTATCAAGCACATCTCTACTTCGGGCGG
CAATATTTACCGTCGTCGGATAAGAGTAGATCCAGCAGATGTCTCATGTC
GACACTGCAATGTGTCCCTATGGAGACGAGAGGTTTGCTAAAAACACGAC
ATAATGGAGGGTTCCTCCTTGACAATTTTTGTCGTCGACCTAGCAGAGCT
CTCCATGGAAATTTTTATGTAAATTTTTCTACCAACAGATGTTTTTGTTC
CGACGCACAGCGTTGAGACTTCCATACATATAACAAGTCAAATAGGCGGC
AGGTATCATTTTAACCGTCGCTTGTGAAGGCTTGAAAATAAATCGCCTTC
AGGAGACTGCTCAGATCGCGGTCTTCCTTTGGTGTTTCGTGTTTTTTTCT
TATAGGTTGTGGGAGTCCGTATCCAAATGACCCTCGCCTATGCAGCCATT
CCTGCAACCTACTCACAACATCACCTTAGACTATGTATGCGTACGTAAGG
GCTGCAGCCGCACAAGGATGAGAGCACCAAAACGATCCGTTGGGCCTTTA
TCCTAATAATGTGTGTTGGAGCAGGCTCCTTTAGCACCGGCGGGTCATAC
CAAGTAGGGACTCACCAGCACGAGATAAAATAGAATTCGGCTTGTGTCTC
GTCCTTGTATGTACATGTTTGACGACGAGGTTTACCGAGCTTCTGCTGTG
CAGCACATGTCAACTGCAAACCTCATCTACCGTGTGAGGAGTGTTGGATG
TGGGATGCATCCAAATCGTATCAGCGGCGAGAACTATTATGGCATTAGAG
CACGCGAAAACAGTTTTCTCCCCAAACAGGAGCGGGAACCTCTCTCTCAT
CAATCCGGTCTGCACCCGGGGCATTCATGTGCACACGAAAACTCACGAAA
AAGACTTACGGACCCGCTCTCCCAAGGCGCAGCACACAAGGTGCAACTGC
GCCGGTGCGAAATTACACCGACACACTGCTATGGCAGCACGTGGCGTGCC
CCCCGCTAGCCTAATGTTTTCAGGCAGAAGTTGCCGCACCGCGTCCCCGA
AAGCTCCCCATCCACCTAGGCAATCGGCACACTCGTGCACTGTAAATTTG
GTCAAACCAGTAAACACAAGTCCCCCTCCCCGTATTCGGTGATCTCGCGA
CCCTCAACAGCCTGGGAAGGGTTCCTCGAGAGCACCGCAGAACCGACCGT
GCTAGCCTCCGGCGACTTGGCCACCCCTTCCGTCGATGTGGTCTACCAGA
TCAGCCTGGAGGACCCCCTCGCCGTGGTGCCGTTCGACATCTCCACCGCC
GGTGCGTACGCCGTTTTCGTTGAGCATGGCGAGTTGCCCACCGCTCTCGT
GTCTCCTGATGGGGAGATCCTGGTCGCCGGTTACGTGGAAGAGCCGGCGG
GGGAGGAGGAGGAGGAGGAAGAAGAAGAAATAAACGCGACGGGGACGAAG
TGGATGAGCGCACTTGCGGCCTCGGTCATCGTGTCCCTTTGCAGGTAAGT
GGGCCTACTTTGAAGTCGTGCTCTCCTTTCTTTGTCCCAGCCGAAGCTGG
ATTTGCAAACGACAATGTTTCAGTATGCCTCGGAATCGTTCGCGTCCACT
GAGCTCTGTGCGACCTCCCGCAACCGGTCGTACAGAACCCAGAGACGGTA
GCGACACTAACTTTCCGAGCGAGCTCATTATAGCGGCCTGACACCGTTTG
ACACCGTGGACCCGAGAACCTTCTTCGGCCATGGTTTGAGTTTTGGCCCT
ACGGGAAAAAAAGAAGAAAGCCTCCCCACTTTTTAATAAGAGTTGTTGGC
GTTCATGGGCAGCTGCTATCCCGTTACCGTTGTCAAGGCGGTGGTACGGT
GGTGGTGGTGGTGCGGAAAATGTGGTTTTGTACCATGTTGATCATGTGTT
GCTGAAAATCGGTGTAGGTCTGGCGGATGCATAGCAGCAGTGACCGACCG
TACCACCAGTTTCCGTTCATTTGGCGTGATCATTTTGAAGTTGGCGGTCG
TGGCAGTTTGGAAGAACTACTCTCGTACAGAAACAAACAATTACCTCTAT
TGACTTTGGTCATGTGCATCCTTCACTACATCCGTAACGTACAGACGAAT
AAAGCCCACACGCTCTGTAGATGATCCCTTCGCAGCGATGAACATGTTAC
CCCCGGTGGGTAAGCGTGTGCACCAATCTCACCGATCCTGCTCCCTCCCT
AATTTCGAAAACGTTGTCCGTCTTCGCCGCAGCCTGGTGGGGATCATCGT
AGTCATCCACAGGAATGTCGCGGACGGCATCGACCTCTCGCACGCCTTCA
CCTTCGCGTCCGGGGCGCTTATCACGGCCTCCCTCCTTCACCTCATCCCC
GAAGCGCTCGAGGGCCTGGAGTCTAAGTACCACGAACTCCACGACCTCGG
TCTCTACGCCGGCCTATCCGTCATGGGCGGAATGTCTATCGGCATCGTCA
TCCATGCCCTCCTGGGGTCGGACCACTCGACCTACGGCCCAACAGTGGCG
ATCATAAAGGACGAGAAGGCGGCTGTGGCGGGCACGGTCCAGAGCTCGAC
GGACGTTACACAGCCACCGTCCCCGACCAAGTCTAATGCAGAAAGCCTCC
ACGACCTGATCAAAACGAGGGACGGCAGGGCGCTGTGCGACATCAGGGGG
CTCCGGCCGGTGTGCTGGAACGTCATCATCGGCGACCTGGTGCACAACTT
TGCCGACGGAGTTGCGATCGGGGCGGCGTTCCTCACCTGCTCCTCGACCA
TTGGGTGGACCGTCACGGCGACGATAGTTATCCACGAGCTCCCCACGAGC
TGGCCGACTTCATGGCGCTAATCAACGGGGGCATGAGCCTCAAGCAGGTG
CGGTGTAACTGCTGTCGCGTGTCTTGTGTGCTCGTGGTAAAGATATGTCT
TGGTTGCGTGTGGTGTGGAAGGGTTCAGGTAAACTGTAGTTTGGCCGTTG
TATGCATAGCCTCTCGGGTGCGGCTCCCAGTTTAGCTCCTGGCTTCAATC
GCCACAGTAGTTGCTGCTGCAGCGGCTCCCCCGCCGTTCGCCCAAATTTG
CGTTCCGTCGAATACAAACTTCGCCCCTGCGTAGATACGTCGTCTCCACG
AATCCTCATCCTACTGCATGGTACGCGTATCGTAACGATCAGCCGTCGCC
GCCGCCGTCACACTGTTTTTACGCATATGATGGCGCAGGCGTTCGCCTAC
AACTTCCTCTCTGCCCTGACCTCCGTACTGGGCGTAATGGTCATCATGGG
GCTGGAGAGCGAGCTCAGCGAATTCGACATCTCGGTCGTGTTGCTGGTGG
GCTCAGGGTGCTTCATCTTTATCGCCCTCTCCGAGCTGCTGCCGGATGCT
CTCGCCATCAGCACCAGCGGGTCCGTGATGAAATCCCAGGTGCTCAAGCT
GGGGTCCTTCTTGTTCGGGGGGCTCCTGATAGGCATCCCCCTCCTGGTGG
ACGAGCACTGCTCCGCCGGTGGAGACGGTCACGACCACTGAGGGCACAAC
CCTGACAGGACGATTTGGCGTTATGTCGAAGGCCTTGGCCAGAGTTACCT
TCTTGATTTTGGAGACGGGAGGTTTAGTTTTCTTTGTTTTTATGTAGTGT
TGCTGGATTTGAAGACGCACTCCATTCTCGATTGTTTTTTCACGGAAATC
TCATGGATTGATCTCAATTTTATTGATGGAGAACCAATGCCGAACACCTC
TCGGTTTGGCTTGTAAATTTGGTTTGGCCGGGGTATCTCGACCCCACTTG
GGTTTTTGTAGCGGTCCCGACCCCGTTGTAAGATGTAGAGCAGGAATCGA
GAAGTGTGCCGTCACGCCTATCGATACGAGTTGCGGATGGAGAACCCGTG
TTGCTTAGTTCGAGCAAACAGGAAGCAACAAAGGAGGGAAAAAAACGAGA
GCCGTTGTATAAGACGTGTTTTCATACAACCCAACGGTGTACCGCCCTCG
TAACGGACCCCGCACGGAGACGGTCCACAAGGGATGTAGGAGAGAGGAGA
GACTACCTGAATGAAATAACCTAGAAGTCGCTAGTTTGACGTTCATGTGT
TTAGCTCATGGATGTGGGTTGGGCCTTCTCTAGTTGGCTGTATTCTTTCA
TATTTCGTGGCATGCCAACTACGCTACGTAGTTGGGGGTTTCTTGTACAA
TACGCGTTCTTGTCTGTTTGTCATTAATCATGTTGCATGCGCAAGCTTGT
GCTTTGTTCTATGTCGCAAGCTCTTGTCTGAGCTATTTTCTGCCTTGGGG
CACGTACTGTAGCATGCGTTCGCATGTCGTGTTGTGGCGAGACTCGCTTC
TTAGCGCCTTCCAAATCGTACTGTGGCGGGGAAGTACGCTCTATCTAGCA
GCCTGGGGGTTTTAGACGACACACAGAATATCACAGGAATAATGCCATAT
GAGAAGAGTCCCCTGCAGGTGGTTTATGTCCGATTTTTATTTATTATTGT
TTTCGTTTCGCAAGAAAATCAGAACACGGGAGGGAGAGAGGGCGGTTTTA
TTGCAGAACCAATTGTATGTATCACTTTCAGGGGCGTACTTTTGAGGCCA
ACATGTCTTTGTCGTGGATCCAGCAGTGGAGTTTTTCGTGATACCCACCC
CCGCGCGCCTCCTGACGAGTATCTCCTAGGTAGTCCATGTTTATGAGCTG
GGTCTGGGGTCCAAACGAGGGCAGGTAGACGTGGGTAGGTTGTAAACATA
GAGCACACGCGCTCCTGTACGGGGCGCATCTGATACGCGTCGTTGCGCAA
TCCTCGCACAGACGTCGTGACCACGTTTTGATGCGGTGCGTAACTTTTTC
TATATTAATATAATGTAGGCCAACCAATGTGCATCTCACATCGTTGCGAA
TATACTTTCAAGTTTTCCAAAATTCTCGGAATACTAGTCTCGACCATTTC
GGTGTGTTGTTGCAAAACTTCGTCGAAGGGTGAAACGGCATCACCCTTGC
CTATTGCAAGCAGTACGGCAGCAAAAGGAAAAGCAGAACGACGTCTGGGT
GCTGCGTCACTGGCGACAGAAACAACAAGCGTTTACCGCACTCGATGTGA
TATTCTTGAGGCCGAACACGGGAAATAGACTGGG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1056:6140..14973-

>mRNA_P-lacustris_contig1056.516.1 ID=mRNA_P-lacustris_contig1056.516.1|Name=mRNA_P-lacustris_contig1056.516.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2382bp|location=Sequence derived from alignment at P-lacustris_contig1056:6140..14973- (Pleurocladia lacustris SAG_25_93)
ATGAGGACCTCCGCGGCAGCCGCGCTGTTGGTGTTGGTGGCGTTTGCTAA
GGTGCGTGCAGAAACGAGCGATACGGCCCAAGAGGAGCACGCGCACGAGG
GTAGCTTTGGATCCGGTGCGGTGTATGACATGGGAGCAGGGACCAACTCG
TTCATCGTCACACCAGCGGAGGGAACCTTCGAGGACGCAACCTTCGCGTT
TATGGTAGTCCCCACAATTTCTGCCGACATGGATGGCTTGGAGGAAGCTG
AGCACGAGGCCGAGGGTGATGAGGACCTCCGCGGCAGCCGCGCTGTTGGT
GTTGGTGGCGTTTGCTAAGGTGCGTGCAGAAACGAGCGATACGGCCCAAG
AGGAGCACGCGCACGAGGGTAGCTTTGGATCCGGTGCGGTGTATGACATG
GGAGCAGGGACCAACTCGTTCATCGTCACACCAGCGGAGGGAACCTTCGA
GGACGCAACCTTCGCGTTTATGGTAGTCCCCACAATTTCTGCCGACATGG
ATGGCTTGGAGGAAGCTGAGCACGAGGCCGAGGGTGCCTGGGAAGGGTTC
CTCGAGAGCACCGCAGAACCGACCGTGCTAGCCTCCGGCGACTTGGCCAC
CCCTTCCGTCGATGTGGTCTACCAGATCAGCCTGGAGGACCCCCTCGCCG
TGGTGCCGTTCGACATCTCCACCGCCGGTGCGTACGCCGTTTTCGTTGAG
CATGGCGAGTTGCCCACCGCTCTCGTGTCTCCTGATGGGGAGATCCTGGT
CGCCGGTTACGTGGAAGAGCCGGCGGGGGAGGAGGAGGAGGAGGAAGAAG
AAGAAATAAACGCGACGGGGACGAAGTGGATGAGCGCACTTGCGGCCTCG
GTCATCGTGTCCCTTTGCAGCCTGGGAAGGGTTCCTCGAGAGCACCGCAG
AACCGACCGTGCTAGCCTCCGGCGACTTGGCCACCCCTTCCGTCGATGTG
GTCTACCAGATCAGCCTGGAGGACCCCCTCGCCGTGGTGCCGTTCGACAT
CTCCACCGCCGGTGCGTACGCCGTTTTCGTTGAGCATGGCGAGTTGCCCA
CCGCTCTCGTGTCTCCTGATGGGGAGATCCTGGTCGCCGGTTACGTGGAA
GAGCCGGCGGGGGAGGAGGAGGAGGAGGAAGAAGAAGAAATAAACGCGAC
GGGGACGAAGTGGATGAGCGCACTTGCGGCCTCGGTCATCGTGTCCCTTT
GCAGCCTGGTGGGGATCATCGTAGTCATCCACAGGAATGTCGCGGACGGC
ATCGACCTCTCGCACGCCTTCACCTTCGCGTCCGGGGCGCTTATCACGGC
CTCCCTCCTTCACCTCATCCCCGAAGCGCTCGAGGGCCTGGAGTCTAAGT
ACCACGAACTCCACGACCTCGGTCTCTACGCCGGCCTATCCGTCATGGGC
GGAATGTCTATCGGCATCGTCATCCATGCCCTCCTGGGGTCGGACCACTC
GACCTACGGCCCAACAGTGGCGATCATAAAGGACGAGAAGGCGGCTGTGG
CGGGCACGGTCCAGAGCTCGACGGACGTTACACAGCCACCGTCCCCGACC
AAGTCTAATGCAGAAAGCCTCCACGACCTGATCAAAACGAGGGACGGCAG
GGCGCTGTGCGACATCAGGGGGCTCCGGCCGGTGTGCTGGAACGTCATCA
TCGGCGACCTGGTGCACAACTTTGCCGACGGAGTTGCGATCGGGGCGGCG
TTCCTCACCTGCTCCTCGACCATTGGGTGGACCGTCACGGCGACGATAGT
TATCCACGAGCTCCCCACGAGCTGGCCGACTTCATGGCGCTAACCTGGTG
GGGATCATCGTAGTCATCCACAGGAATGTCGCGGACGGCATCGACCTCTC
GCACGCCTTCACCTTCGCGTCCGGGGCGCTTATCACGGCCTCCCTCCTTC
ACCTCATCCCCGAAGCGCTCGAGGGCCTGGAGTCTAAGTACCACGAACTC
CACGACCTCGGTCTCTACGCCGGCCTATCCGTCATGGGCGGAATGTCTAT
CGGCATCGTCATCCATGCCCTCCTGGGGTCGGACCACTCGACCTACGGCC
CAACAGTGGCGATCATAAAGGACGAGAAGGCGGCTGTGGCGGGCACGGTC
CAGAGCTCGACGGACGTTACACAGCCACCGTCCCCGACCAAGTCTAATGC
AGAAAGCCTCCACGACCTGATCAAAACGAGGGACGGCAGGGCGCTGTGCG
ACATCAGGGGGCTCCGGCCGGTGTGCTGGAACGTCATCATCGGCGACCTG
GTGCACAACTTTGCCGACGGAGTTGCGATCGGGGCGGCGTTCCTCACCTG
CTCCTCGACCATTGGGTGGACCGTCACGGCGACGATAGTTATCCACGAGC
TCCCCACGAGCTGGCCGACTTCATGGCGCTAA
back to top