mRNA_P-lacustris_contig1051.492.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1051.492.1
Unique NamemRNA_P-lacustris_contig1051.492.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1051.492.1 vs. uniprot
Match: A0A6H5L8Y3_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Y3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.370e-10
Identity = 43/78 (55.13%), Postives = 52/78 (66.67%), Query Frame = 3 
Query:  207 NPRQHEHKRANGGSSRTVFCTTMRCTTNERLSDDPPPVD----RSEEVRLRNDMVSPLLSLVSTDSVGRHVVAGAGAG 428
            NPR+ +H  ANG S+           T  R S+D P VD    RSEEVR++N++VSPLLSL STDSVGRHVVAG G+G
Sbjct:   66 NPRRQQHNGANGCSTGDSPAAPRYSGT--RSSEDIPHVDAVADRSEEVRVQNNIVSPLLSLASTDSVGRHVVAGGGSG 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1051.492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L8Y3_9PHAE1.370e-1055.13SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1051contigP-lacustris_contig1051:60712..63211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size429
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1051.492.1prot_P-lacustris_contig1051.492.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1051 60712..63082 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815322.53583-CDS-P-lacustris_contig1051:60711..608021622815322.53583-CDS-P-lacustris_contig1051:60711..60802Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1051 60712..60802 +
1693493475.6164742-CDS-P-lacustris_contig1051:60711..608021693493475.6164742-CDS-P-lacustris_contig1051:60711..60802Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1051 60712..60802 +
1622815322.5474744-CDS-P-lacustris_contig1051:62873..630821622815322.5474744-CDS-P-lacustris_contig1051:62873..63082Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1051 62874..63082 +
1693493475.6246412-CDS-P-lacustris_contig1051:62873..630821693493475.6246412-CDS-P-lacustris_contig1051:62873..63082Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1051 62874..63082 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815322.5610383-UTR-P-lacustris_contig1051:63082..632111622815322.5610383-UTR-P-lacustris_contig1051:63082..63211Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1051 63083..63211 +
1693493475.632239-UTR-P-lacustris_contig1051:63082..632111693493475.632239-UTR-P-lacustris_contig1051:63082..63211Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1051 63083..63211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1051.492.1

>prot_P-lacustris_contig1051.492.1 ID=prot_P-lacustris_contig1051.492.1|Name=mRNA_P-lacustris_contig1051.492.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=100bp
MAERSFSVSALASLLASVSSLEDDGDSVSSDTHERLREATRRGAERKARV
LSKHRAVLVRWTGATTVVATPDSTNTRGRTVVAVGLCFAQQCAAPPTRD*
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mRNA from alignment at P-lacustris_contig1051:60712..63211+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1051.492.1 ID=mRNA_P-lacustris_contig1051.492.1|Name=mRNA_P-lacustris_contig1051.492.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2500bp|location=Sequence derived from alignment at P-lacustris_contig1051:60712..63211+ (Pleurocladia lacustris SAG_25_93)
ATGGCTGAGAGATCATTCAGTGTCAGTGCTCTGGCGAGTCTGCTCGCATC
TGTTTCATCGCTAGAAGATGATGGTGACTCGGTATCATCAGGTGAAAATT
TGAATGTGATGAAAATATATTTATTTACTTGCTGGCTGGTCTGGTGGTCT
GGTGCGGTCTCAGTCATGTCAACTGCTGTCTGTATCCCATGATCATGTTC
AGAGAAGCACGAACATCCTTGCTCGAGCGGGTTATTTTTGTTCCAACTCA
GGTGCAACCCTTTGCAGTGGTCGTAGCAACACTGCTTCAAAAATTAGATC
AGTAAAAACTCCCCTGCAAATCTCTGCGAGGTCAGCGACAATGTTTGGGG
AGAAACCCGCCGTTACGTCGTGTTTTACTATGCCTCCACAGGAAACATCG
TAGTGTCTGCATGAGAGACATCTATCTTATCGTTTTTCATATACTATGAC
TAGAAAACATTTACAGAAGTAGTTTAAAGCGACACCTATACATTTTGGTG
GGATATCCTGTAGGTCTAGCTACAATAAAAAAAAAATACTACACGGCAGC
TGGTTACCTTACGACTACACATGATTTAATGCCTTACACATTGATTTAAT
GTGCGTTTGGTTGTATTGAAAAGCAGCGGCGAGCGAAGCGAGCCGTTATG
TTTCGCGCGACAGCGTGAAGCATAGCTTCGAATTCATATCGACATCGCGG
GACTCTGTGGGGGTGCGTGAAAAAAATCTTGCCACAGGAAGACAAATTGT
ACATCGCCCCTATTTTGTATCTGTCTGTATGCACGCAAAAAATAGACCCA
CGTTTTGATTCACAACGCGACGAACTCGCCACACATCGGCGCAACCAAGG
GCTTGCACTGATGATACACACTAGCTCGAGCTAGTGCTGCTTGTTTCACT
GCAACCCGTGCCGAAATGGGGGAGCAAGGACGTCAAACGTGTGTATATAG
CGGAGGGCAGACACACATGGCGACAAGCTTGGTGCTCCAGGCATGTTTGA
CAGAAGAAGAAGAACGAGCACAGAGCAGCCCGTTGTCCCTCTGCCGCTGT
TGAACCACACAGCAGTGTTCCTCACACATCACCACTCTGCCCTATAAGAT
ACATACGCTTGGAGATACCTCCACAGGCCGTCGCCTGTCACATACCTCGC
GACAGGCCCTCTCGTGACTGACTACTACTCTGTGGTGGTTGGTTGCTTTT
TTGCTGCTGCTCTGCTTTTTTTTTCAGAGAGAGGTTGGTGTATTACGTGT
GTCCTTCACGACCACCAACAGCCCACACTGACGGCTGTAGAGCCACACAC
TACTCCTCACAGCAGCAGCACTCTGCCCTAGAGTACGCTTGGAGTACGCT
TGGAGATACCTACTCAGCCCCTCCAGCCCCTCCGTGGCCCTACTCTCCAG
CACCAGCAAGCATCATTTTTTTTTTAGCAGCTTTCTCTAGGCAGACGTAC
GTGTGTCCTTCACGACCAACAGCAGCCCACACTGACTGCGGTAGAGCCAT
ACACTACTCCTGACAGCACCACTCTGCCCTAAAGTACGCTTGGAGAACAT
ACCTACACAGCCCCTCCGTGGCCCGGCATCAGCAGCGCTTTGTACTCTCT
CTGGTCTGTCTGTTCTCTGCCTGTAAATCTCAGCATCTTTTTTTTTAGCA
GCTTTCTCTAGGCAGGTGTACTTGTGTATGTCATTCACCACCACGAACGA
CCAGCCCACACACGCTGTTGTTGTTGTAGAGCCACACACTACTACTCCTG
ACAGCACAACTCTGCCCTAAAGTACGCTTGGAGATACCTACTACACAGCC
CCTCCGTGGCCCGTCGATAGCAGGAGCGCTTTGTACTCTCTCTCTCTCTG
CCAAGTATTCTGCATTTGAGATCAAATGACCCGTTTGGCTTTTTTATGTC
AACCATTTTCAGGAAATAATGAAATAATGAGTGACAGCATTTTTTTTCCC
CAGCTCTCTCTGGAGAAGAGCCAGCACCACTGGTGTGCCCGCAACATACG
GCTTAACGGAGTTAGTTGAGAAGCACACAAGCGTTCACCCACTGACGCAC
ACACGCGCTGCTTCTCAAACCTACCCCCATTCTAGTATATTGGCGTGCCT
CGCTCCCCAGCCACGCTTTCCAACACGCACGCCGCCCCGCCCCAACCGGC
TCGCTGTGTCAGACACGCACGAAAGGCTGCGCGAAGCCACGCGTCGTGGC
GCCGAGAGGAAGGCCCGCGTATTGTCAAAGCATCGCGCCGTTCTGGTGCG
GTGGACCGGAGCGACGACCGTAGTGGCAACCCCCGACAGCACGAACACAA
GAGGGCGAACGGTGGTAGCAGTAGGACTGTGTTTTGCACAACAATGCGCT
GCACCACCAACGAGAGATTGAGTGATGATCCACCACCCGTTGATCGAAGC
GAGGAGGTTCGCCTACGAAACGATATGGTCTCGCCACTGCTATCGTTGGT
GTCTACCGACAGCGTCGGCAGGCATGTTGTGGCCGGGGCCGGGGCGGGGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1051:60712..63211+

>mRNA_P-lacustris_contig1051.492.1 ID=mRNA_P-lacustris_contig1051.492.1|Name=mRNA_P-lacustris_contig1051.492.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=600bp|location=Sequence derived from alignment at P-lacustris_contig1051:60712..63211+ (Pleurocladia lacustris SAG_25_93)
ATGGCTGAGAGATCATTCAGTGTCAGTGCTCTGGCGAGTCTGCTCGCATC
TGTTTCATCGCTAGAAGATGATGGTGACTCGGTATCATCAGATGGCTGAG
AGATCATTCAGTGTCAGTGCTCTGGCGAGTCTGCTCGCATCTGTTTCATC
GCTAGAAGATGATGGTGACTCGGTATCATCAGACACGCACGAAAGGCTGC
GCGAAGCCACGCGTCGTGGCGCCGAGAGGAAGGCCCGCGTATTGTCAAAG
CATCGCGCCGTTCTGGTGCGGTGGACCGGAGCGACGACCGTAGTGGCAAC
CCCCGACAGCACGAACACAAGAGGGCGAACGGTGGTAGCAGTAGGACTGT
GTTTTGCACAACAATGCGCTGCACCACCAACGAGAGATTGAACACGCACG
AAAGGCTGCGCGAAGCCACGCGTCGTGGCGCCGAGAGGAAGGCCCGCGTA
TTGTCAAAGCATCGCGCCGTTCTGGTGCGGTGGACCGGAGCGACGACCGT
AGTGGCAACCCCCGACAGCACGAACACAAGAGGGCGAACGGTGGTAGCAG
TAGGACTGTGTTTTGCACAACAATGCGCTGCACCACCAACGAGAGATTGA
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