mRNA_P-lacustris_contig1051.490.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1051.490.1
Unique NamemRNA_P-lacustris_contig1051.490.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1051.490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1051contigP-lacustris_contig1051:50227..50668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size442
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1051.490.1prot_P-lacustris_contig1051.490.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1051 50259..50627 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815321.8831482-UTR-P-lacustris_contig1051:50226..502581622815321.8831482-UTR-P-lacustris_contig1051:50226..50258Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1051 50227..50258 +
1693493475.398752-UTR-P-lacustris_contig1051:50226..502581693493475.398752-UTR-P-lacustris_contig1051:50226..50258Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1051 50227..50258 +
1622815322.0894833-UTR-P-lacustris_contig1051:50627..506681622815322.0894833-UTR-P-lacustris_contig1051:50627..50668Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1051 50628..50668 +
1693493475.4227629-UTR-P-lacustris_contig1051:50627..506681693493475.4227629-UTR-P-lacustris_contig1051:50627..50668Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1051 50628..50668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815321.9873488-CDS-P-lacustris_contig1051:50258..506271622815321.9873488-CDS-P-lacustris_contig1051:50258..50627Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1051 50259..50627 +
1693493475.411155-CDS-P-lacustris_contig1051:50258..506271693493475.411155-CDS-P-lacustris_contig1051:50258..50627Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1051 50259..50627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1051.490.1

>prot_P-lacustris_contig1051.490.1 ID=prot_P-lacustris_contig1051.490.1|Name=mRNA_P-lacustris_contig1051.490.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=123bp
MGVRVVHLPPGGIQSQKITIPKAWARPHVALYHVPWPTCSLNCCQQGDER
TSATPINQYDSVYVLGHNESDANQGLPITRLDAKFDTSTSRGVQRSSCIH
VHPGQSHKTRANTFPAEMAQCL*
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mRNA from alignment at P-lacustris_contig1051:50227..50668+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1051.490.1 ID=mRNA_P-lacustris_contig1051.490.1|Name=mRNA_P-lacustris_contig1051.490.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=442bp|location=Sequence derived from alignment at P-lacustris_contig1051:50227..50668+ (Pleurocladia lacustris SAG_25_93)
ACAGAATCAAGGAAAAGAGCACGTGGAATGGTATGGGCGTGCGGGTGGTA
CACCTTCCCCCGGGGGGAATTCAAAGCCAGAAAATTACAATCCCAAAGGC
GTGGGCACGCCCCCATGTGGCGTTGTACCATGTACCGTGGCCAACGTGCA
GCCTCAACTGCTGCCAACAAGGCGACGAACGCACAAGCGCCACGCCCATA
AACCAATATGATAGTGTTTACGTCCTGGGACACAACGAAAGCGATGCCAA
CCAGGGCCTTCCAATCACGAGACTTGACGCCAAATTCGATACCTCCACCT
CCAGAGGGGTGCAAAGATCAAGTTGCATCCACGTACACCCCGGACAAAGC
CACAAAACTAGGGCGAACACTTTCCCAGCAGAAATGGCTCAATGCCTTTG
ATTTAATTGTACGTGAGTTGACTGAAACACTCACCAGAAATA
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Coding sequence (CDS) from alignment at P-lacustris_contig1051:50227..50668+

>mRNA_P-lacustris_contig1051.490.1 ID=mRNA_P-lacustris_contig1051.490.1|Name=mRNA_P-lacustris_contig1051.490.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=738bp|location=Sequence derived from alignment at P-lacustris_contig1051:50227..50668+ (Pleurocladia lacustris SAG_25_93)
ATGGGCGTGCGGGTGGTACACCTTCCCCCGGGGGGAATTCAAAGCCAGAA
AATTACAATCCCAAAGGCGTGGGCACGCCCCCATGTGGCGTTGTACCATG
TACCGTGGCCAACGTGCAGCCTCAACTGCTGCCAACAAGGCGACGAACGC
ACAAGCGCCACGCCCATAAACCAATATGATAGTGTTTACGTCCTGGGACA
CAACGAAAGCGATGCCAACCAGGGCCTTCCAATCACGAGACTTGACGCCA
AATTCGATACCTCCACCTCCAGAGGGGTGCAAAGATCAAGTTGCATCCAC
GTACACCCCGGACAAAGCCACAAAACTAGGGCGAACACTTTCCCAGCAGA
AATGGCTCAATGCCTTTGAATGGGCGTGCGGGTGGTACACCTTCCCCCGG
GGGGAATTCAAAGCCAGAAAATTACAATCCCAAAGGCGTGGGCACGCCCC
CATGTGGCGTTGTACCATGTACCGTGGCCAACGTGCAGCCTCAACTGCTG
CCAACAAGGCGACGAACGCACAAGCGCCACGCCCATAAACCAATATGATA
GTGTTTACGTCCTGGGACACAACGAAAGCGATGCCAACCAGGGCCTTCCA
ATCACGAGACTTGACGCCAAATTCGATACCTCCACCTCCAGAGGGGTGCA
AAGATCAAGTTGCATCCACGTACACCCCGGACAAAGCCACAAAACTAGGG
CGAACACTTTCCCAGCAGAAATGGCTCAATGCCTTTGA
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