mRNA_P-lacustris_contig105.479.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig105.479.1 vs. uniprot
Match: A0A6H5KXY4_9PHAE (YjgF_endoribonc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXY4_9PHAE) HSP 1 Score: 327 bits (838), Expect = 1.610e-112 Identity = 167/189 (88.36%), Postives = 176/189 (93.12%), Query Frame = 1
Query: 1 MFRRASSLVGRAVVRPRAIHTEAKLRDLGIELPTPRPPLGNFVMTVRTGNLLYTSGHLPISLEGEMTTGKVGQEVSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCVDGFKGQPKVVNGASDLFAEVFGKRGVHSRSAVGTNALPMNVPVEIEAIVEFDNSGKKGKKGDDDWTVVKRP 567
M RR SSLVGRA VRPR +HTEAKL++LGIELPTP+ PLGNFVMTVRTGNLLYTSGHLP SLEGE TTGKVGQE++EEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNC DGF GQPKVVNGASDLFAEVFG+RGVHSRSAVGTNALPMNVPVEIEAIVEFD+ GKKG DDDWTV+KRP
Sbjct: 1 MLRRVSSLVGRAAVRPRRVHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQELNEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDDGGKKG---DDDWTVLKRP 186
BLAST of mRNA_P-lacustris_contig105.479.1 vs. uniprot
Match: A0A4D9CNR9_9STRA (YjgF_endoribonc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNR9_9STRA) HSP 1 Score: 213 bits (541), Expect = 2.440e-67 Identity = 101/153 (66.01%), Postives = 127/153 (83.01%), Query Frame = 1
Query: 55 IHTEAKLRDLGIELPTPRPPLGNFVMTVRTGNLLYTSGHLPISLEGEMTTGKVGQEVSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCVDGFKGQPKVVNGASDLFAEVFGKRGVHSRSAVGTNALPMNVPVEIEAIVEFDN 513
IHTEAKL ++G++LP+P P GNF M V++G ++Y SGHLP G++ TGKVG EVS EEAQ AA+ +A+ L++S+KK++GDLDRV RIVKLVGFVNCVDGF QP VVNGASD F +VFG +GVH+RSAVGTNALP+N+PVEIEAIVE ++
Sbjct: 32 IHTEAKLTEMGLKLPSPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 184
BLAST of mRNA_P-lacustris_contig105.479.1 vs. uniprot
Match: W7TB75_9STRA (Endoribonuclease l-psp n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TB75_9STRA) HSP 1 Score: 212 bits (539), Expect = 2.540e-66 Identity = 101/153 (66.01%), Postives = 126/153 (82.35%), Query Frame = 1
Query: 55 IHTEAKLRDLGIELPTPRPPLGNFVMTVRTGNLLYTSGHLPISLEGEMTTGKVGQEVSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCVDGFKGQPKVVNGASDLFAEVFGKRGVHSRSAVGTNALPMNVPVEIEAIVEFDN 513
IHTEAKL ++G++LP P P GNF M V++G ++Y SGHLP G++ TGKVG EVS EEAQ AA+ +A+ L++S+KK++GDLDRV RIVKLVGFVNCVDGF QP VVNGASD F +VFG +GVH+RSAVGTNALP+N+PVEIEAIVE ++
Sbjct: 83 IHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235
BLAST of mRNA_P-lacustris_contig105.479.1 vs. uniprot
Match: A0A5A8CF06_CAFRO (YjgF_endoribonc domain-containing protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8CF06_CAFRO) HSP 1 Score: 202 bits (513), Expect = 3.720e-63 Identity = 94/167 (56.29%), Postives = 127/167 (76.05%), Query Frame = 1
Query: 10 RASSLVGRAVVRPRAIHTEAKLRDLGIELPTPRPPLGNFVMTVRTGNLLYTSGHLPISLEGEMTTGKVGQEVSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCVDGFKGQPKVVNGASDLFAEVFGKRGVHSRSAVGTNALPMNVPVEIEAIVEFD 510
RA+S + R +HTEAK+ ++G++LPTP P N++M R GNLL+T+GHLP+ +G++ GKVG++ + EEA AAR+ A+ ++ ++K ++GDLD+V R+VKL GFVNCVD F QPKV+NGASD EV G+RGVH RSAVGTNALPMNVPVE+EAI+E D
Sbjct: 12 RATSAPAVRALAARGVHTEAKIEEMGLKLPTPPTPAANYIMCHRVGNLLFTAGHLPMQEDGQLFNGKVGKDFTTEEAYTAARQCALAILGTVKAEIGDLDKVKRVVKLTGFVNCVDAFSAQPKVLNGASDFMGEVLGERGVHVRSAVGTNALPMNVPVEVEAIIEID 178
BLAST of mRNA_P-lacustris_contig105.479.1 vs. uniprot
Match: A0A4D9CNR0_9STRA (YjgF_endoribonc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNR0_9STRA) HSP 1 Score: 197 bits (501), Expect = 1.100e-61 Identity = 96/153 (62.75%), Postives = 121/153 (79.08%), Query Frame = 1
Query: 55 IHTEAKLRDLGIELPTPRPPLGNFVMTVRTGNLLYTSGHLPISLEGEMTTGKVGQEVSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCVDGFKGQPKVVNGASDLFAEVFGKRGVHSRSAVGTNALPMNVPVEIEAIVEFDN 513
+ EA+L LGI+LP P GN+ + VRTGNLL+ +GH+P+ G + TGKVG + S EE QEAA+ +AI L+A++K +LGDLD+V RIVKLVGFVNCVDGF QP VVNGASD F +VFG +GVH+RSAVGTNALP+N+PVEIEAIVE ++
Sbjct: 2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKSGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 154
BLAST of mRNA_P-lacustris_contig105.479.1 vs. uniprot
Match: A0A835Z1E3_9STRA (Putative translation initiation inhibitor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1E3_9STRA) HSP 1 Score: 196 bits (497), Expect = 8.800e-61 Identity = 92/153 (60.13%), Postives = 121/153 (79.08%), Query Frame = 1
Query: 49 RAIHTEAKLRDLGIELPTPRPPLGNFVMTVRTGNLLYTSGHLPISLEGEMTTGKVGQEVSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCVDGFKGQPKVVNGASDLFAEVFGKRGVHSRSAVGTNALPMNVPVEIEAIVEF 507
R + EA+L GI+L P PP GN+V VR+GN L+ +GH+P+ + + GKVG++V+ E+A AR+VAI +++++K +LGDLDRVTRIVKLVGFVNC D F GQP V+NGASDLF EVFGK+GVH+RSAVGTNALP+ +PVEIEA++EF
Sbjct: 19 RGVQIEARLAQRGIQLSDPVPPKGNYVPAVRSGNTLFLAGHIPLMPDNNLAKGKVGKDVTPEQANAIARQVAINILSTLKVELGDLDRVTRIVKLVGFVNCTDDFTGQPGVINGASDLFVEVFGKKGVHARSAVGTNALPLGIPVEIEAVIEF 171
BLAST of mRNA_P-lacustris_contig105.479.1 vs. uniprot
Match: A0A485KSR4_9STRA (Aste57867_10922 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSR4_9STRA) HSP 1 Score: 193 bits (491), Expect = 6.510e-60 Identity = 94/171 (54.97%), Postives = 126/171 (73.68%), Query Frame = 1
Query: 1 MFRRASSLVGRAVVRPRAIHTEAKLRDLGIELPTPRPPLGNFVMTVRTGNLLYTSGHLPISLEGEMTTGKVGQEVSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCVDGFKGQPKVVNGASDLFAEVFGKRGVHSRSAVGTNALPMNVPVEIEAIVEFDN 513
MFR A + A R +HTE ++++LG LP P GN+ VR+GNLL+T+GHLP GE+ GKVG++++ E+ EAAR VA+ + A++K++LGDLDRV RIVK+VGFVNCVDGF QP V+NG SD E+FG+RGVH+RSAVGTNALP+ +PVE+E IVE ++
Sbjct: 1 MFRSAVAAFKPAAAAVRRVHTENRIKELGYTLPAVATPKGNYRNVVRSGNLLFTAGHLPQPAGGELIKGKVGEDLTAEQGYEAARHVALAVCATLKQELGDLDRVKRIVKVVGFVNCVDGFTAQPSVINGFSDTVGEIFGERGVHARSAVGTNALPLGIPVEVECIVEVED 171
BLAST of mRNA_P-lacustris_contig105.479.1 vs. uniprot
Match: A0A6S9K1N5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9K1N5_HETAK) HSP 1 Score: 192 bits (489), Expect = 1.540e-59 Identity = 93/174 (53.45%), Postives = 130/174 (74.71%), Query Frame = 1
Query: 1 MFRRASSLVGRAVV---RPRAIHTEAKLRDLGIELPTPRPPLGNFVMTVRTGNLLYTSGHLPISLEGEMTTGKVGQEVSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCVDGFKGQPKVVNGASDLFAEVFGKRGVHSRSAVGTNALPMNVPVEIEAIVEFDN 513
+ RRA+ ++ ++ V R IH E ++ +LG +LP +PP GNFV+ R GNLLYT+GHLP +G++ GKVG++V + A +AA+ V + ++A++K ++GDLDRV +VKL+GFVNC DGF+ QP+VVNG SDL E+FG +G HSRSAVGTNALP+NVPVEIEAI E ++
Sbjct: 4 LLRRANGVIPKSSVLVNAARQIHIEQRIEELGYKLPEMKPPAGNFVLVKRIGNLLYTAGHLPQPADGDLMLGKVGEDVDMDTAYKAAQCVGLNILATVKAEVGDLDRVRNVVKLMGFVNCPDGFRAQPQVVNGCSDLMVEIFGDKGRHSRSAVGTNALPLNVPVEIEAIFEVED 177
BLAST of mRNA_P-lacustris_contig105.479.1 vs. uniprot
Match: A0A812PJA3_9DINO (TCP17 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PJA3_9DINO) HSP 1 Score: 192 bits (489), Expect = 2.410e-59 Identity = 95/161 (59.01%), Postives = 126/161 (78.26%), Query Frame = 1
Query: 31 RAVVRPRA--IHTEAKLRDLGIELPTPRPPLGNFVMTVRTGNLLYTSGHLPISLEGEMTTGKVGQEVSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCVDGFKGQPKVVNGASDLFAEVFGKRGVHSRSAVGTNALPMNVPVEIEAIVEF 507
RAV R A +HTEAKL +LG+ELP P N++++VR+G+ ++T+GHLP+ +G + +GKVG +++ EEA AA V + +++++K +LGDLDRV RIVKL GFVNCVD F QPKV+NG SDLF +VFG RGVH+RSA+GTNALP+NVPVEIEAIVE
Sbjct: 19 RAVARLGACGVHTEAKLEELGLELPPPGKAQANYILSVRSGDTIFTAGHLPMMHDGTLMSGKVGVDLNTEEAYAAAELVGLNILSTLKAELGDLDRVKRIVKLNGFVNCVDSFSAQPKVINGISDLFGKVFGARGVHARSALGTNALPLNVPVEIEAIVEL 179
BLAST of mRNA_P-lacustris_contig105.479.1 vs. uniprot
Match: A0A2R5GI79_9STRA (Protein TCP17 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GI79_9STRA) HSP 1 Score: 192 bits (488), Expect = 2.640e-59 Identity = 92/158 (58.23%), Postives = 123/158 (77.85%), Query Frame = 1
Query: 34 AVVRPRAIHTEAKLRDLGIELPTPRPPLGNFVMTVRTGNLLYTSGHLPISLEGEMTTGKVGQEVSEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCVDGFKGQPKVVNGASDLFAEVFGKRGVHSRSAVGTNALPMNVPVEIEAIVEF 507
A V R +HTEAKL LG LP P G++ + VR+GN ++T+GHLP G++ GKVG ++S EEA +AA+ A+ ++A++K +LGDLDRV R+VK+VGFVNC DGF QP+V+NGASDLFAEV G+RG+H+RSAVGTN+LP+N+PVE+EAIVE
Sbjct: 24 APVLMRGVHTEAKLEKLGYTLPQVASPKGSYQLCVRSGNQMFTAGHLPQPANGDLLVGKVGVDLSVEEANKAAQYCALSILATLKAELGDLDRVARVVKVVGFVNCADGFAQQPQVINGASDLFAEVLGERGLHARSAVGTNSLPLNIPVEVEAIVEI 181 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig105.479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig105.479.1 >prot_P-lacustris_contig105.479.1 ID=prot_P-lacustris_contig105.479.1|Name=mRNA_P-lacustris_contig105.479.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=190bp MFRRASSLVGRAVVRPRAIHTEAKLRDLGIELPTPRPPLGNFVMTVRTGNback to top mRNA from alignment at P-lacustris_contig105:226495..229207- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig105.479.1 ID=mRNA_P-lacustris_contig105.479.1|Name=mRNA_P-lacustris_contig105.479.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2713bp|location=Sequence derived from alignment at P-lacustris_contig105:226495..229207- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig105:226495..229207- >mRNA_P-lacustris_contig105.479.1 ID=mRNA_P-lacustris_contig105.479.1|Name=mRNA_P-lacustris_contig105.479.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1140bp|location=Sequence derived from alignment at P-lacustris_contig105:226495..229207- (Pleurocladia lacustris SAG_25_93)back to top |