mRNA_P-lacustris_contig104.411.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig104.411.1
Unique NamemRNA_P-lacustris_contig104.411.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig104.411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig104contigP-lacustris_contig104:97237..97707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size473
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815309.5388076-CDS-P-lacustris_contig104:97236..975511622815309.5388076-CDS-P-lacustris_contig104:97236..97551Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig104 97237..97551 +
1693493466.272305-CDS-P-lacustris_contig104:97236..975511693493466.272305-CDS-P-lacustris_contig104:97236..97551Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig104 97237..97551 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815309.5485852-UTR-P-lacustris_contig104:97551..977071622815309.5485852-UTR-P-lacustris_contig104:97551..97707Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig104 97552..97707 +
1693493466.2802367-UTR-P-lacustris_contig104:97551..977071693493466.2802367-UTR-P-lacustris_contig104:97551..97707Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig104 97552..97707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig104.411.1prot_P-lacustris_contig104.411.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig104 97237..97551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig104.411.1

>prot_P-lacustris_contig104.411.1 ID=prot_P-lacustris_contig104.411.1|Name=mRNA_P-lacustris_contig104.411.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=105bp
RGLRVFHCVPVCTSRRSFRKPGHVLEYELHVTTRADSFVTWKCSVLCCVS
QIDTGSPRQMTTIQQFNTSRPCLHFLARAKGRACRACTVRPFGVDGLYGH
ISRA*
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mRNA from alignment at P-lacustris_contig104:97237..97707+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig104.411.1 ID=mRNA_P-lacustris_contig104.411.1|Name=mRNA_P-lacustris_contig104.411.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=471bp|location=Sequence derived from alignment at P-lacustris_contig104:97237..97707+ (Pleurocladia lacustris SAG_25_93)
CGTGGCCTCCGCGTCTTCCACTGTGTCCCTGTGTGTACGTCCCGTAGATC
ATTCAGAAAGCCAGGACATGTATTGGAATACGAGCTGCACGTTACTACTA
GAGCAGATAGTTTTGTCACCTGGAAGTGCTCGGTGTTGTGTTGTGTGAGT
CAAATCGACACGGGAAGCCCAAGACAAATGACCACAATTCAACAATTCAA
CACGTCACGTCCTTGTCTTCATTTCCTCGCCCGAGCTAAGGGTAGAGCTT
GCCGTGCGTGTACCGTACGGCCCTTCGGCGTTGATGGTCTTTATGGTCAT
ATCTCGCGTGCATAGAGATATAATTTACGTCCGAAACCGTCCCAACGATC
TTCACCTGTCGTGTGGTCGTACAACGGGTCCCTTTCCCAAACGTCTCCTC
GCGCGGGTATGCGTTGTACCGATAAACGAACGAGCAGACGAAACAAAAAA
CAAAAAACAAGACAATACACC
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Coding sequence (CDS) from alignment at P-lacustris_contig104:97237..97707+

>mRNA_P-lacustris_contig104.411.1 ID=mRNA_P-lacustris_contig104.411.1|Name=mRNA_P-lacustris_contig104.411.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=630bp|location=Sequence derived from alignment at P-lacustris_contig104:97237..97707+ (Pleurocladia lacustris SAG_25_93)
CGTGGCCTCCGCGTCTTCCACTGTGTCCCTGTGTGTACGTCCCGTAGATC
ATTCAGAAAGCCAGGACATGTATTGGAATACGAGCTGCACGTTACTACTA
GAGCAGATAGTTTTGTCACCTGGAAGTGCTCGGTGTTGTGTTGTGTGAGT
CAAATCGACACGGGAAGCCCAAGACAAATGACCACAATTCAACAATTCAA
CACGTCACGTCCTTGTCTTCATTTCCTCGCCCGAGCTAAGGGTAGAGCTT
GCCGTGCGTGTACCGTACGGCCCTTCGGCGTTGATGGTCTTTATGGTCAT
ATCTCGCGTGCATAGCGTGGCCTCCGCGTCTTCCACTGTGTCCCTGTGTG
TACGTCCCGTAGATCATTCAGAAAGCCAGGACATGTATTGGAATACGAGC
TGCACGTTACTACTAGAGCAGATAGTTTTGTCACCTGGAAGTGCTCGGTG
TTGTGTTGTGTGAGTCAAATCGACACGGGAAGCCCAAGACAAATGACCAC
AATTCAACAATTCAACACGTCACGTCCTTGTCTTCATTTCCTCGCCCGAG
CTAAGGGTAGAGCTTGCCGTGCGTGTACCGTACGGCCCTTCGGCGTTGAT
GGTCTTTATGGTCATATCTCGCGTGCATAG
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