mRNA_P-lacustris_contig1039.391.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1039.391.1
Unique NamemRNA_P-lacustris_contig1039.391.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1039.391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1039contigP-lacustris_contig1039:8622..10790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size561
Cds size549
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1039.391.1prot_P-lacustris_contig1039.391.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1039 8622..10780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815306.1739979-CDS-P-lacustris_contig1039:8621..87141622815306.1739979-CDS-P-lacustris_contig1039:8621..8714Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1039 8622..8714 -
1693493465.3969717-CDS-P-lacustris_contig1039:8621..87141693493465.3969717-CDS-P-lacustris_contig1039:8621..8714Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1039 8622..8714 -
1622815306.1848261-CDS-P-lacustris_contig1039:9481..95541622815306.1848261-CDS-P-lacustris_contig1039:9481..9554Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1039 9482..9554 -
1693493465.4095976-CDS-P-lacustris_contig1039:9481..95541693493465.4095976-CDS-P-lacustris_contig1039:9481..9554Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1039 9482..9554 -
1622815306.193328-CDS-P-lacustris_contig1039:10031..101581622815306.193328-CDS-P-lacustris_contig1039:10031..10158Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1039 10032..10158 -
1693493465.4172642-CDS-P-lacustris_contig1039:10031..101581693493465.4172642-CDS-P-lacustris_contig1039:10031..10158Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1039 10032..10158 -
1622815306.2019255-CDS-P-lacustris_contig1039:10524..107801622815306.2019255-CDS-P-lacustris_contig1039:10524..10780Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1039 10525..10780 -
1693493465.4253657-CDS-P-lacustris_contig1039:10524..107801693493465.4253657-CDS-P-lacustris_contig1039:10524..10780Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1039 10525..10780 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815306.2147002-UTR-P-lacustris_contig1039:10780..107901622815306.2147002-UTR-P-lacustris_contig1039:10780..10790Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1039 10781..10790 -
1693493465.4326596-UTR-P-lacustris_contig1039:10780..107901693493465.4326596-UTR-P-lacustris_contig1039:10780..10790Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1039 10781..10790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1039.391.1

>prot_P-lacustris_contig1039.391.1 ID=prot_P-lacustris_contig1039.391.1|Name=mRNA_P-lacustris_contig1039.391.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=183bp
MQRCVGALEGEVGRLRGVEKLLDECKRRLVLTRAASDRQRRLVQGMEATL
AASASQRPSPSSSNSTQTDEPPTGSFAQRRKLTLREFVLVGDRTVMDGEN
VCPYPGRSHITPNDGGGSVSTTIAAALSASRSSRSCTTSKDNGRTSSSAG
SKSNDDAASSAGTKTTKNKRSRDKNLAKKAKRT
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mRNA from alignment at P-lacustris_contig1039:8622..10790-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1039.391.1 ID=mRNA_P-lacustris_contig1039.391.1|Name=mRNA_P-lacustris_contig1039.391.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2169bp|location=Sequence derived from alignment at P-lacustris_contig1039:8622..10790- (Pleurocladia lacustris SAG_25_93)
CTGGAACCGCATGCAGCGGTGCGTCGGTGCCCTCGAGGGGGAGGTTGGAC
GCCTCCGGGGAGTTGAAAAACTCCTCGACGAGTGCAAGCGGCGCCTGGTA
TTGACCAGGGCCGCCAGCGATCGCCAGCGCCGCCTGGTTCAAGGAATGGA
AGCAACCCTCGCGGCTTCGGCTTCGCAGCGCCCTTCCCCCTCGTCGTCGA
ATTCGACACAAACCGACGAGCCCCCCACCGGCAGCTTCGCGCAAAGGAGG
AAGCTGACCCTCCGAGGTAGGAGCCAAGTTTTGGGGATGCGTTTCGTATG
TCGTATGGAATGGTCACTAGATGGAGGGAGAGCATCTTGTCTGGTCAGCT
GGTATGCAAAGCGTTCGTATTTTGTGTGCCTCCGAAGAAGCCTGCTCCAC
GACGCCCGAAAAACGAAAGCCGAACTGTGTGTAAGGGTAAAGTTGACTGC
TCCCACCGGTATTGTTGGCCGTGGCTTCCGCGTCATTGTCCGTCATAGCC
GCTGGTTGCTGCAACAAAAACTGTCTACGCGTATTCGCATCAAGTACTGT
GTGTCCCTCCTTTGCCACCTAGCGTTGTTCTTGTTGATTTCCCTCTTCCT
TGCCTTTACGCTTTCTTTGCACCGAACACCAGAGTTTGTGTTAGTGGGAG
ACAGGACCGTCATGGACGGTGAAAACGTGTGCCCCTACCCCGGTAGGAGC
CACATCACGCCAAACGACGGCGGGGGCAGCGTCTCCACGACAATCGCTGC
CGCTCTTAGGTATTCCGCACACGCATTGAACAGCATGCTAGACCATGGTG
ACCGAAGACATCTTGTTGAGGATATAGCTTGGCTTCAGGCCCGACGTTCT
AGATTGAGTACACGAGTCGTGCGTTTAACCCCGAACGAGTTGACCCCAGC
CAAACGAGTCGTAGCATGAGACATTCTCACGATTCCCCCCCGTCCCCTTC
TGGCATTGTGCGGGACGTGAACGGTGAACGAGGTCGCGATACCGACCACC
TGGTCTGTGTTAGCCGAAATTGTCTCAGTCGACGAGAAAAGCGGTCGGTA
TTCGTGAGCTTCTTCCCTCCTCAAGAGACAGTCATACGGCTATCCGCTTG
ATGCCAATTCTGACCTCTACATTGTCGTACCCTTGTGTCGTAGCTCTGAA
TGTTCGTCCTCGGGCCGTGACTACTCTTATCGGGGTCTCTCTTAACTCTC
TCCAACCTTGTTCCTCTGCTGCCCACGAATCCCAAGCGCAAGCAGGAGCA
GCAGGAGCTGCACCACCAGCAAGGACAACGGCAGGACAAGTTCAAGCGCC
GGCAGCAAGGTTCGCTTCTCAAACAACCGAAAATGTCGTTGTTGTGGTGG
TTTTTGTCGTCGTTGTGTTGTGGTTGTTTTTGCTAGTAGTACAGAAACCC
TACGACCTTGAAGCAGGTTCGGCCTGAAGGGATCTGAAGCATAACTCCTC
GTGGGTATTTTAGTCTACCGAGAAACAAGCGTCGGACGTTCTTTATCCCC
TAGAACGACCCCGCACCAGGCAGTTCTTAACCCGCCTGGTCTAGGATAAT
GTCCACCTTCCGCAGAAAGATTCAGCAGCAGCTGTTTTATTGTCATATGG
CGTTATGTGGTTCTGTTTCTGTTGTTGTTGTTGCTATGTTTCAACAAAGC
CGGTGCTGAGCTGACCAGAACCCGTACCATATTGAAGCGGGTTCCGCCTG
CATTGCGGTTTCAGGTAGGGCTCCTTCGTGCTTTTCTGATTCTACCGTAA
AACCTCAAGATTTCTCTATCCCCCAGAACATCCCCCGTTGATAGCGGTTC
TGACGCCCGCCTTGTCTGTGACAATGCCCACGTTATGCGTATGCGGAGTT
GTGTGGAATCTATCAGCTGGTTCGCAGGTGGTTAGTTGTTGATGATGTTG
TTGTTGCCGTCTCCATCCTCAAGCCACACCTTTGCTATCAATGGGTGACA
CATTCCCTATGCAACAGAGTTCTCTTCGCATATTTTCAACAATCTCGCCT
ACTTTTGCTTGCATAATTTGGCTTTGTGAGTTTAATCGCGTTGGGCTGCT
GTTTATCTGTCACTGACCGAAAACAGAGTAACGACGACGCCGCCTCCTCC
GCCGGCACCAAGACGACGAAGAACAAGCGATCGAGGGACAAGAACCTCGC
GAAAAAAGCGAAGAGGACG
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Coding sequence (CDS) from alignment at P-lacustris_contig1039:8622..10790-

>mRNA_P-lacustris_contig1039.391.1 ID=mRNA_P-lacustris_contig1039.391.1|Name=mRNA_P-lacustris_contig1039.391.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1098bp|location=Sequence derived from alignment at P-lacustris_contig1039:8622..10790- (Pleurocladia lacustris SAG_25_93)
ATGCAGCGGTGCGTCGGTGCCCTCGAGGGGGAGGTTGGACGCCTCCGGGG
AGTTGAAAAACTCCTCGACGAGTGCAAGCGGCGCCTGGTATTGACCAGGG
CCGCCAGCGATCGCCAGCGCCGCCTGGTTCAAGGAATGGAAGCAACCCTC
GCGGCTTCGGCTTCGCAGCGCCCTTCCCCCTCGTCGTCGAATTCGACACA
AACCGACGAGCCCCCCACCGGCAGCTTCGCGCAAAGGAGGAAGCTGACCC
TCCGAGATGCAGCGGTGCGTCGGTGCCCTCGAGGGGGAGGTTGGACGCCT
CCGGGGAGTTGAAAAACTCCTCGACGAGTGCAAGCGGCGCCTGGTATTGA
CCAGGGCCGCCAGCGATCGCCAGCGCCGCCTGGTTCAAGGAATGGAAGCA
ACCCTCGCGGCTTCGGCTTCGCAGCGCCCTTCCCCCTCGTCGTCGAATTC
GACACAAACCGACGAGCCCCCCACCGGCAGCTTCGCGCAAAGGAGGAAGC
TGACCCTCCGAGAGTTTGTGTTAGTGGGAGACAGGACCGTCATGGACGGT
GAAAACGTGTGCCCCTACCCCGGTAGGAGCCACATCACGCCAAACGACGG
CGGGGGCAGCGTCTCCACGACAATCGCTGCCGCTCTTAGAGTTTGTGTTA
GTGGGAGACAGGACCGTCATGGACGGTGAAAACGTGTGCCCCTACCCCGG
TAGGAGCCACATCACGCCAAACGACGGCGGGGGCAGCGTCTCCACGACAA
TCGCTGCCGCTCTTAGCGCAAGCAGGAGCAGCAGGAGCTGCACCACCAGC
AAGGACAACGGCAGGACAAGTTCAAGCGCCGGCAGCAAGCGCAAGCAGGA
GCAGCAGGAGCTGCACCACCAGCAAGGACAACGGCAGGACAAGTTCAAGC
GCCGGCAGCAAGAGTAACGACGACGCCGCCTCCTCCGCCGGCACCAAGAC
GACGAAGAACAAGCGATCGAGGGACAAGAACCTCGCGAAAAAAGCGAAGA
GGACGAGTAACGACGACGCCGCCTCCTCCGCCGGCACCAAGACGACGAAG
AACAAGCGATCGAGGGACAAGAACCTCGCGAAAAAAGCGAAGAGGACG
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