mRNA_P-lacustris_contig1037.383.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1037.383.1 vs. uniprot
Match: D7G3T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T2_ECTSI) HSP 1 Score: 317 bits (811), Expect = 5.060e-105 Identity = 175/261 (67.05%), Postives = 204/261 (78.16%), Query Frame = 2 Query: 167 ELVKVALTSSGLESVLSRLTDRLNDLESFNRAQEHRLEALKQQPPEVAESKKHLCETSAILDLSAKRPEQQLAAMADAIVGISHNVNQFYKDVKYREAMQQATDAAQDELMHMELDRLSRVVDVKFTRKDAQDMRKMIAKEMHAVREEMESEFAGKLGTVYDEVSGQLSRVADQMRGIQDTTSATNELLKYRIEEAFSDIQIASMDMDAKMRKITDIFGLSADPNGNETPSFPDMLKSMGDLQNLVSDCRDNLDFQTVRKL 949
EL+ VALTSSGLESVLS+LTDR+NDLES N+AQ+HRLE L Q PEV S KHLCETSA+ +L+ K PEQQL AM+DAIV I +VNQFYKDVKYREA+QQATDAAQDELM MELDRL+ VD+KFTRKDAQDMR+MIAKEM A SRV D +R IQ+TT ATNELLKYRIEEAF+DIQ AS+DMDAK+RKITD+FGLSA+P+ N TPSFP+ML+++GDL+ L CRD++D QTVR L
Sbjct: 11 ELLTVALTSSGLESVLSQLTDRVNDLESVNKAQKHRLETLAHQTPEVDISDKHLCETSALQNLAGKSPEQQLVAMSDAIVSIGQSVNQFYKDVKYREAVQQATDAAQDELMQMELDRLNGEVDIKFTRKDAQDMRRMIAKEMRAXXXXXXXXXXXXXXXXXXXXXXXXSRVTDHVRVIQETTGATNELLKYRIEEAFTDIQRASVDMDAKIRKITDMFGLSANPDDNGTPSFPEMLRNIGDLERLALGCRDDIDEQTVRAL 271 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1037.383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1037.383.1 >prot_P-lacustris_contig1037.383.1 ID=prot_P-lacustris_contig1037.383.1|Name=mRNA_P-lacustris_contig1037.383.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=266bp METNNELVKVALTSSGLESVLSRLTDRLNDLESFNRAQEHRLEALKQQPPback to top mRNA from alignment at P-lacustris_contig1037:31085..44199- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1037.383.1 ID=mRNA_P-lacustris_contig1037.383.1|Name=mRNA_P-lacustris_contig1037.383.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=13115bp|location=Sequence derived from alignment at P-lacustris_contig1037:31085..44199- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1037:31085..44199- >mRNA_P-lacustris_contig1037.383.1 ID=mRNA_P-lacustris_contig1037.383.1|Name=mRNA_P-lacustris_contig1037.383.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1596bp|location=Sequence derived from alignment at P-lacustris_contig1037:31085..44199- (Pleurocladia lacustris SAG_25_93)back to top |