mRNA_P-lacustris_contig1029.339.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1029.339.1
Unique NamemRNA_P-lacustris_contig1029.339.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1029.339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1029contigP-lacustris_contig1029:1375..7524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815299.5721483-CDS-P-lacustris_contig1029:1374..14571622815299.5721483-CDS-P-lacustris_contig1029:1374..1457Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1029 1375..1457 +
1693493460.4489617-CDS-P-lacustris_contig1029:1374..14571693493460.4489617-CDS-P-lacustris_contig1029:1374..1457Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1029 1375..1457 +
1622815299.5819938-CDS-P-lacustris_contig1029:7343..75241622815299.5819938-CDS-P-lacustris_contig1029:7343..7524Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1029 7344..7524 +
1693493460.4600298-CDS-P-lacustris_contig1029:7343..75241693493460.4600298-CDS-P-lacustris_contig1029:7343..7524Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1029 7344..7524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1029.339.1prot_P-lacustris_contig1029.339.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1029 1375..7524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1029.339.1

>prot_P-lacustris_contig1029.339.1 ID=prot_P-lacustris_contig1029.339.1|Name=mRNA_P-lacustris_contig1029.339.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=88bp
PSPGPWSCSPPTSIGWNRTPINQRTTNQPVCRASAATVAYEPDGSPGRAV
CIPLERSSTRFWLSLSRRPRGSLSSGIRPGEGYPGCWR
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mRNA from alignment at P-lacustris_contig1029:1375..7524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1029.339.1 ID=mRNA_P-lacustris_contig1029.339.1|Name=mRNA_P-lacustris_contig1029.339.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6150bp|location=Sequence derived from alignment at P-lacustris_contig1029:1375..7524+ (Pleurocladia lacustris SAG_25_93)
CCGTCGCCAGGGCCATGGAGCTGTTCGCCGCCAACATCGATAGGCTGGAA
CCGGACACCGATCAACCAGAGAACGACGAACCAGTGAGTCCCGAGCCGGA
AGTCGACGACAGCATTTCGGATGCTGAGTCCAAAATCTCCGCAGACACCC
TGTTGGTAAACTAGTAGCTTGTGGAGAAAATATGTTGTATTAATGAGACC
TTGGACTCGAGAGACAGGTCGACGCAGTGGAGTGAGCTCAGTGGGCAAGC
ACAGCCACATCCAGCAACAACAACAAAAAAATGAAACCTCCAAAAGTCCG
AACACAAACGTACTTCTAGATCCAAAAGTCCGAACACAAACGTACTTCTG
GATCCCATTGCAAAGAATATTCATATATCCATGAAGAACGTTCTACGTCC
ATCTGTCGATACTACTGCCGCTATCACGAACACCCTCCCTTGGGACTGTT
GTCTCGACCAGACCTAACATCCGAAAAACAAATACGACTCATACGTCTAC
TTCTACGATCTTGAGCCCAGAATAAAATCACGATGAACTAGAAAAAGATC
CCTCGGCAATGCCTTCGTAAGGATATCCGCATGCTGTTCTTCACTGGAAA
CATGCCTGATTTTCAACACACCTTCCTCTGTCAAACTCCTAAGGAAGTGG
TGCCGCACGTCAATGTGCTTGGTGTTGCACGAGCTAAGGGGATTCTCTGC
AAGTGCAATTGCTCCTTCGTTGTCCTCAAGTACCTCAATCTTACCAAGCT
TCTCACTAGGCCTCAAGAACTCGAGTATTATTCCGTTCACAAACAGAGCT
TCCTTCACACCATCACCCATAGCTACATACTCTGCTTCAGATTGTTGACA
GTGAAACGCATTTCTGAGTCCTAGAAATCCAAGCGACAGGACAGGCAGCT
ACATGAACTAATGCTCCCGAAACTGATCTACGGTCAGTGGCCTTACTTGC
GAAGTCTGAATCTACGCATGCATGCCAACGTGCCTACGTCTACCGTAGTG
TCCTGCTTGTACTTCAAACTCAAAGTCAGATGCGCCGTTTCCAGAAGATA
ATTCACAATCTTCTGGGCTGTGCCTTCCAGTGGATCTTCTTTGGTTCGCG
AAAATGCCTCCCCACCGCCCGCACAGCATCGAGATGTCGGGCTTCGTCTG
GTTGGCGATCCACATCAGGCTCCCCACCACCTCTCGGAACGGCACATCTC
CTCCCCCCTCATCCTCCTTCACGGACCTGTAATCACTAGCAGGGGGAGCA
GGGATAGGTGGCTGGTGCGACAAACATTTAATCTCTAGAGAACACTCCTG
ATATACTGTAACTCTCCGAGAAATCTCAATCGTGCCAGCCTCGCGGTCGC
GAATGAATGCGCAACCAAGAAAGAACTTGACCTCACCCAAATTCTTCGTA
GGAAGAGAGTCAACTAGCGCTTCCACAACCACCTTGGCAAGACTCATAAT
TCCTGCATACAGAATGTCATCCACATGAATCACGATCATACCCACTACTG
TACCTCGCCTCCCATCATGAAACGCAGGACACAGGGGTCAGACAGAGACT
GCTCGAAACCAATCCTCTTCAGGTCGGACACCAGCCTCTTGTGTAATACT
CTAGATGCCTGTTTTCAATCCGTACAAACAAACTCTTGTTCAAAACGGAC
AACCTTTGCTGTCATCGAACCGCAGCCAGGAAGCAACTTCATAAACACCT
CGTGATCCAATTCCATCTGAACAAACGCTTGCTCAATGTCCAAGTGGAGT
AATTCTAAATTATACTTGCACGCCAATGCTACTACCAATCAAATCCATGC
AGCATTTGTAGTAGGCGAGAAAGTCTCAAGATAGTCCACACCAAGCTTCT
GCTTGAAACCCTTTTGCTACAAGCCTAGCCTTGGTCTTCCTTATCTTTCC
TGTTTTGTCTGCTTTCCATCTGAAAACCCATCTAACATCAATCACGTTAC
AGCCTGCTGGGATCTTTACTGCTAACGCGAACGTTCCTGCTCTTATCAAG
CCTTCAACTTCTGCAGACATGGCTACATCCCACATCGTGGTGTTCTTCGA
CTGCCGTGCTTCTTGATAGCTACCAGGCTCTGGCTTAACATCCTCAATGA
ACTCTGTCGGCAATCAATTCCATTTGGTCACCTGCTCTCTGCTTCGCTGA
GAGTGCATGTATTATCTCTGATGCGGAGATGGGTCCTAGGGTGGCCACAA
GGCCAGGGACATTAGTCTGCTGATTAACTGCATGAGTTTGCGCACGAGTT
CTACCTTCTCTGATTTCATCTTCGCACGCACAGTGGTGTTAAAATCAGCA
AGCTCAACAACATGCCGCGGACGACGAGCGGCTGGAGGAGATGCCTCCGC
CTCTACCTCCTGCCCTCCCGGTCCCAACGACTCTGCATCCACCCCTTCCT
GACCCATAGACTCTTCATCATGCCCTCCCGGACCCGCCGACTCAACTTCC
CTCACCTCCTGCTCTCCTAGTTCCTCCACGTCGGTGAACTCATCTGATGG
AGAAGAAACAGAGGGAACTGCACCACTGGGGAAATTATTCACGGGCGAAT
GTGGTACGGAGGGAGGTTGCTCTACACTGCCTGCATTAACACCGCCAACC
TCAATGGGGACTGCTACAACACGTCGCAAACGAATGTGGGGAACTCCCCT
CCCTACAAGCGGCCACACATCAGCTTTTACATCGTCGTCACTTTCctCCC
CTCCCTCCTCCGCAACCTCTATCGGCAAAGAAGGTTGCGGCGGAGGGAGC
TGTGACGGCAACGCCTCCCACGTCACATCACTCGTTTCTTGAATAATTCC
CGCCCTAGTAAGTACTCAATGGCAATCACGCGGGTGGTGTCTCGAGGGAC
CGACATAAAAGCAACTCTCACCCTTCGATAGCAGTTTGGACGGTCGCTGC
CACCTGCAGTACGCCGGCTTCaAAAACGGATACGGTCTAGCAGGACGGGC
TTCCCCATACCACATTTCATACGGCGATTTAGAGTCGGGGCTAGCAGAAC
ACGCTGTGTGATTGAGTGCCTCGCAAGCCCAGTGCATTGCCTCAGCCCAG
AGTCTGTCAGTCTTAGGTAACTGTACATGCCCAAAGAGAACCTTTGCCTG
AATACGAGCCGCCATCGCGGCCTCCTCTATCAATCCCAAGCCACGCTCTG
CAACACCGTTGTATTGGGGACTACAAGCCGGGGTGAACTCTTGTTTGATC
AAGAGCTCTTGCACACGGATGCAAACTCTCCACCGAAAAACTCCCCCCCA
TTGTCAGATCTAACAATCTCAACCAATGATGGGATTCCATCAGCACGCAC
ACTAGCAAGAAAACTCCGGAAAGCACTCGCAGCGTCTGATTTATTTCTCA
GGAAATACATCCATGTACGTCTTGTGAAATCATCCTTCACAATCATGGGG
TAGTGTTCACCCCCGACGGACGCAACGTCCTTCCTCCCTCCCAGGTCAAA
CAAAACTCTGCCCAACTTTTTTTCTGATCTGTTTTTGGTTTCACAAGTAA
TCCTTTTTTGATTGCCTTCGACATCGAACATCCCGTACAAGCATGCATTT
CACCAGTCAACTCGatatATACCCAATCGCTTTGCAGTGGTACGAAGCAA
TCCCTCATGTGAATGAGCATAAATGTTATGAAAGTCGTTCACCATCCTGA
TTTCATGCTTGGGGTTTGAAGGAGTGAGGGCAGCCAACACCGAACCCACA
GATTCGTCTCCCAGACGATACGCAGTCGCAATTAGCATGCCATCACAGTT
CTGAAAAAATAACATGTCCATCAAAAGCAGTCATCACACCATCAGGACCA
CCAAGACCATTCCATGACTTGCCATCAAACTCTGCGCTGGGAGAAAAGAG
GTTGTACCCTAAGTTGGGAGAGTACAATACATTCTGCAACTCTACTGAAA
ATTCGCTGTCAGCAGTCGCAAACACCAACTCCAGTGTTCCAGAGAGTGCT
ACCTCACAAGTCATGCCACCAGTCCCTTTTTACGTTCTTGTGGCAAGGCA
TCACGTCTTTCATGCAAGAGAGAGAGTCTTTTGTGTGAAAAGCCGGATTG
CATACCATTCGACACACTTATCTTTTCTTGCAAAAGGGAGCGAGCGTATT
CACGGACAGCATCAATCGTCACTGATCAAGCATTCCCAGAGCACAGCATC
ATAAAACACTACAAGACACGTCATCATTCGAGTTTTCCAAGCTGGTTTGA
GAGAGCAACACCGAAAGAGTTACATCAAGTTGGACTTCTCACCGTTCTCG
GATTTCTCAGTCTGGGTAGGATGAGCTATCGCACGAGCCAGGCAGTCCTT
CCTCAAGTGACTCTTCTCTCCACTACCCAGGGGTCTCTACCCAGGGGGTC
AAGTCGAAACGAATGTCTGCAATCGGGATATTAATATCAGTCTCAGAAAC
AAAAACTTCATACAGATTGTTGTACCGGGCATACAGCACAAAATTTTGCG
ACCACAAGGGATAAGCAACGTCCGTCCCGTCAAACACAGGTGCTTTGGGA
ATTCTCAAAGGACCCCGACCCAAGTTCTCCCCTGTGTGTGAAATGCCCGC
CCCAGGAATCCAAATTGTTTCCACTACGCGACATTTTCCCATCACCTACT
TTCTGTATAGCATAGTAGGTGTGGGCGGAACGCGAGACTAGCTATTAAAG
CCCCACTCACAATTCCCGGACTGAAGACTACTAGCTATTTAAAGCTCCAC
TTCCAATCCCAATCGAACCAAAGTTTTGCAGCACCTACAGAGGAACGATT
TCCTGCATATACATGAGGTTCAAGCCTGAGTCTGTGAGACCATTACTCCC
AACCCGTACAGCAGATGATACATGAGGGTTCAAGCCTGAGTATGCAAGAC
TACTACTCCCAACCCGCATGTTGGATACGCCAAAGGACTTGGGCATCGCC
GCCCGTACCTCCCGCGATCCTGCTGGTAGCATCGCCAGATGGATGCATCC
CAGCCTCTGTTTCACTGCTTCCGGGCGCAGCAACTGAAACAGAGGACTCC
TCCTGCTCTACCCGCTGACCAATAAACGACGTGACTAGAGCCGTGAGTTG
GGACAACTGAGTCTCTAACATTACCATCCTCTCACCAACATCCTCCCGCG
AGTTACCCCTAGATGGATCACTCGCAGGTTCCCCCACATCAGCCATGTGG
AGAAAGGTTGATCAGGCCTCTCTCGTACAGTAGTCTCGTGCAGTCCAGGG
GGACGTCGGAGCAGTTGACCGCTATAGCGTGTTGGTAAACTAGTAGCTTG
TGGAGAAAATATGTTGTATTAATGAGACCTTGGACTCGAGAGACAGGTCG
ACGCAGTGGAGTGAGCTCAGTGGGCAAGCACAGCCACATCCAGCAACAAA
ATAAAAAAAATGAAACCTCCAAAAGTCCGAACACAAACGTACTTCTAGAT
CCAAAAGTCCGAACACAAACGTACTTCTAGATCCAAAAGTCCGAACACAA
ACGTACTTCTGGATCCCATTGCAAAGAATATTCATATATCCATGAAGAAC
GTTCTACGTCCATCTGTCGATACTACTGCCGCTATCACGAACACACCCCT
GGATGGGAACTGGATGAGTCTGGCGACAGAGGCGGGGGTTTCTGATGGTT
CATTTGAGGGGGCGGAGGACTGGGGTTGGACGTACGAAAAAGAAGACTTG
ATTTGACGTTGGGGGTTGAGGACACCATGGCTCGAGAAGTGTGGATGCCG
CCTAAGGTGCGCGTGTTCTTCGTAGCTCTTGTTGTTTTCTTTCTTACTTT
TCTTTTTTTCGGTTATTTGTGGGGTGGTGGGGATTGGGGACGGTGCGGTT
TCCGTATTGCACCCAAGGCATGTACGTTCAGCATCCACATATCACCGTTG
TACTTTCCCGGCTTACGGTATTTAAACTCTCTCTATTTCAGCCCTTAGTA
TGGCTTGCACTGAGAAAATCATGTCTGTTGTTGCCGGGCATTCGCGTGTC
CTTGTTGGTGATTCAACAGGCCCGTCTGTCGTGCTTCTGCCGCTACGGTG
GCGTACGAGCCCGATGGCAGCCCCGGACGTGCGGTCTGTATCCCGCTGGA
GAGGAGCTCCACCAGGTTTTGGTTATCCCTTTCTCGACGTCCAAGAGGAT
CGTTGAGTTCCGGGATCCGACCAGGGGAAGGGTACCCAGGGTGTTGGAGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1029:1375..7524+

>mRNA_P-lacustris_contig1029.339.1 ID=mRNA_P-lacustris_contig1029.339.1|Name=mRNA_P-lacustris_contig1029.339.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=528bp|location=Sequence derived from alignment at P-lacustris_contig1029:1375..7524+ (Pleurocladia lacustris SAG_25_93)
CCGTCGCCAGGGCCATGGAGCTGTTCGCCGCCAACATCGATAGGCTGGAA
CCGGACACCGATCAACCAGAGAACGACGAACCACCGTCGCCAGGGCCATG
GAGCTGTTCGCCGCCAACATCGATAGGCTGGAACCGGACACCGATCAACC
AGAGAACGACGAACCAGCCCGTCTGTCGTGCTTCTGCCGCTACGGTGGCG
TACGAGCCCGATGGCAGCCCCGGACGTGCGGTCTGTATCCCGCTGGAGAG
GAGCTCCACCAGGTTTTGGTTATCCCTTTCTCGACGTCCAAGAGGATCGT
TGAGTTCCGGGATCCGACCAGGGGAAGGGTACCCAGGGTGTTGGAGGGCC
CGTCTGTCGTGCTTCTGCCGCTACGGTGGCGTACGAGCCCGATGGCAGCC
CCGGACGTGCGGTCTGTATCCCGCTGGAGAGGAGCTCCACCAGGTTTTGG
TTATCCCTTTCTCGACGTCCAAGAGGATCGTTGAGTTCCGGGATCCGACC
AGGGGAAGGGTACCCAGGGTGTTGGAGG
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