mRNA_P-lacustris_contig1027.323.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1027.323.1 vs. uniprot
Match: A0A6H5KKX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKX4_9PHAE) HSP 1 Score: 866 bits (2237), Expect = 5.550e-301 Identity = 482/782 (61.64%), Postives = 564/782 (72.12%), Query Frame = 1 Query: 1 MSFADPEAEEHTLQTFFDRSKFPGGQTTQLRDACAYVQQFIAQELCGTLASDPTFDELWIHFQAILGRIFGKQDATTAGPGGGPSPGVCGGAACENSWMFAATSFYALEGLCNVVKPTHAGGAAGRTT------RACDPRLCFMSELAISLLTLLLARPPDPSSPGAKNLFGLLLEPQKVWYPFSCTSPPTPPHTVSFLRREARPDMILFENSRLYTHCLSSPPSLFPPMLFVRG-IPQHVVRFHNVPAGGAVEGEEAAEVVRAAPELSLSTLELYLFSFAWYALSSYEDFHYGTEGPGRLTDPNRSHNGIDPSFRQERAALGWRRHGVTGLTQRNPYMTLLKDYMEAFFPHGGGASIGGGNGGASGSGMSVQCELLLRVLVEFWLEGNTVLRPGVLKEQEQQQQAV---AWGNSNNNGLRVPPTAPRTSSSYDPTVALLWSDYTPPTDVSVHGLLVASAHLLADPRLQESCRRSLGHQPTAAGVGETAGATALRAGGSPGGGEKERSALTPALEVLRPHVFSFLRVAFSPESTMDTSSSGFSLAVELWLLWMRPWAAPAILRGGSPDSKSGSHPPGSATPRRTGSASFTGGATRRDAGGVSNQGES---WVAEMVTLVKDFMRTEPSRAPANSDGTQAGRSTGGGRRTGTGVEGR---GYCYDPWGGWVLENYSLYTTILVAFVRKAGNMSFKVNDRLRGYDYNRPYGGIHGNSG-SAAMAAFFGDTAGANLRLLNRVTDVFSPGIMSLLASAKDTVRRTREQGEGGVDVGVGAVARCGVR 2295
MSF DPEAEE TL TFF PGG+T++LR AC +VQQFIAQELCGT+A+DPTFDELW+HFQAILG IFGKQDAT GP G + +CG ENSWMFA TSFY++ GL + +KPT AGG++ R + R DPRLC M +A+SLL+LLLARPP+ S P KNLF +LLEPQKVWY F+CTSPP PPHT++FLR E P ++LFENSRLYTHCLSSPPSLFP +G +P H VRF VP G V G AAEVVRAAP+L LS LELYLFSFAWYALSSYEDF++G EGPGRL+ P+R+H+ ++P+FRQER ALGWRRHGV GLT NPYMTLLKDY+EAFFPH GGASIGG +GMS+Q EL LRVLVEFWLEGNTVLRPGVLKEQE AWGNSNN L P APRT+S+YDP+VALL S+YTPPTD+SVHGLL+ SAHLLADP+L+E+CRR+L G T A+AL G E+ERSALTPALEVLRPHVF FLRVAFS ++TM SS+GFSLAVELW+LWMRPWAA +ILRG SPDS + S P SA+ + ++ G+ R G S+QG WV+ +V +VKDF++ EPSRA + G Q G S G + G GR GY YDPWG WVLENYSLYTT+L AFVRK G+MSFKVND Y+ GG +G A MAA F DT GANLRLL+RV DVFSP + SLLASA+ V R + + VGVG +R
Sbjct: 1 MSFPDPEAEEQTLHTFFGEH-IPGGETSKLRPACTFVQQFIAQELCGTIANDPTFDELWMHFQAILGGIFGKQDATK-GPESGVTSRICGSTTFENSWMFATTSFYSVSGLSDALKPTRAGGSSSRNSNSRRRNRPGDPRLCGMEPMAVSLLSLLLARPPESSPPDTKNLFSVLLEPQKVWYSFTCTSPPMPPHTLAFLRHEGLPGLVLFENSRLYTHCLSSPPSLFP-----QGRMPHHAVRFQEVPGGDLVGGGAAAEVVRAAPDLKLSALELYLFSFAWYALSSYEDFYHGLEGPGRLSVPHRTHHSMEPAFRQERVALGWRRHGVIGLTHLNPYMTLLKDYLEAFFPHCGGASIGGXXXXXXXTGMSLQGELFLRVLVEFWLEGNTVLRPGVLKEQEXXXXXXXXXAWGNSNN--LHFP--APRTTSNYDPSVALLHSEYTPPTDMSVHGLLITSAHLLADPKLKEACRRNLDL------TGGTPAASALARTGETFS-ERERSALTPALEVLRPHVFGFLRVAFSADNTMHLSSAGFSLAVELWMLWMRPWAAASILRGHSPDSLNTSDLPSSASAQSGRASPSCAGSAR----GSSDQGGGLAPWVSVVVAVVKDFVQIEPSRANSGG-GRQTGTSGGESGASAAGARGREVGGYSYDPWGVWVLENYSLYTTVLAAFVRKVGSMSFKVNDGPGHRGYHHHGGGANGQGNPQAQMAAMFADTRGANLRLLHRVVDVFSPAVASLLASAQVAVGR---KAVSAIQVGVGVPRNMAIR 756
BLAST of mRNA_P-lacustris_contig1027.323.1 vs. uniprot
Match: D7FGU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU8_ECTSI) HSP 1 Score: 579 bits (1493), Expect = 9.890e-189 Identity = 358/706 (50.71%), Postives = 419/706 (59.35%), Query Frame = 1 Query: 178 IHFQAILGRIFGKQDATTAGPGGGPSPGVCGGAACENSWMFAATSFYALEGLCNVVKPTHAGGAAG------RTTRACDPRLCFMSELAISLLTLLLARPPDPSSPGAKNLFGLLLEPQKVWYPFSCTSPPTPPHTVSFLRREARPDMILFENSRLYTHCLSSPPSLFPPMLFVRGIPQHVVRFHN-VPAGGAVEGEEAAEVVRAAPELSLSTLELYLFSFAWYALSSYEDFHYGTEGPGRLTDPNRSHNGIDPSFRQERAALGWRRHGVTGLTQRNPYMTLLKDYMEAFFPHGGGASIGGGNGGASGSGMSVQCELLLRVLVEFWLEGNTVLRPGVLKEQEQQQQAVAWGNSNNNGLRVPPTAPRTSSSYDPTVALLWSDYTPPTDVSVHGLLVASAHLLADPRLQESCRRSLGHQPTAAGVGETAGATALRAGGSPGGGEKERSALTPALEVLRPHVFSFLRVAFSPESTMDTSSSGFSLAVELWLLWMRPWAAPAILRGGSPDSKSGSHPPGSATPRRTGSASFTGGATRRDAGGVSNQGES---WVAEMVTLVKDFMRTEPSRAPANSDGTQAGRSTGGGRRTGTGVEGR---GYCYDPWGGWVLENYSLYTTILVAFVRKAGNMSFKVNDRLRGYDYNRPYGGIHGNSG-SAAMAAFFGDTAGANLRLLNRVTDVFSPGIMSLLASAKDTVRRTREQGEGG 2253
+HF+AILG IFGKQDAT GP GP+ +CG ENSWMFA TSFY L GL + +KPT AGG++ R R DPRLC M +A+SLL+LLLARPP+ S P KNLF +LL LF R+ P H VRF VP G V G AAEVVRAAP+L LSTLELYLF FAWYALSSYEDF++G EGPGRLT P R+H+ ++P+FRQER ALGWRRHGV GLT NPY+TLLKDY+EAFFPH GGA IGG +GMS+Q ELLLRVLVEFWLEGNTVLRPGVLKE + +D T PT V RL+E+CRR+L T G A A G E ERSALTPALEVLRPHVF FLRVAFS ++TM SS+GFSLAVELW+LWMRPWAA +ILRG SPDS + S P SA+ + + + G TR G +NQG W++ +V VK+F++ EPSRA + G Q G S GG + G GR GY YDPWG WVLENYSLYTT+L AFVRK G+MSFK ND Y+ GG +G A MA F DT GANLRLL+RV DVFSP + SLLASA+ T+R+ R+Q +GG
Sbjct: 1 MHFKAILGGIFGKQDATK-GPESGPTSRICGSTTFENSWMFATTSFYRLSGLSDALKPTRAGGSSSSNSNGRRRNRPGDPRLCGMEPMAVSLLSLLLARPPESSPPDTKNLFSVLL---------------------------------LFPQGRM---------------------PHHAVRFQEEVPGGDLVGGGAAAEVVRAAPDLELSTLELYLFHFAWYALSSYEDFYHGLEGPGRLTVPYRTHHSMEPAFRQERVALGWRRHGVIGLTHLNPYLTLLKDYLEAFFPHRGGAGIGGLXXXXXXTGMSLQGELLLRVLVEFWLEGNTVLRPGVLKEAQ-------------------------------------TDPTYPTRV----------------RLKEACRRNLDL---------TGGMPAAPARTGEGSSEGERSALTPALEVLRPHVFGFLRVAFSADNTMHLSSAGFSLAVELWVLWMRPWAAASILRGHSPDSLNTSDFPSSASAQSGQACPSSTGGTR----GSANQGGGLAPWISGVVASVKNFVQIEPSRANSGG-GRQTGTSRGGSGASAAGARGREVGGYSYDPWGAWVLENYSLYTTVLAAFVRKVGSMSFKENDGSGHRGYHHHGGGANGQGNLQAEMATMFADTRGANLRLLHRVVDVFSPAVASLLASAQHTLRQARDQRQGG 584
BLAST of mRNA_P-lacustris_contig1027.323.1 vs. uniprot
Match: A0A836CCE8_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCE8_9STRA) HSP 1 Score: 174 bits (440), Expect = 3.030e-40 Identity = 206/749 (27.50%), Postives = 280/749 (37.38%), Query Frame = 1 Query: 139 GTLASDPTFDELWIHFQAILGRIFGKQDATTAGPGGGPSPGVCGGAACENSWMFAATSFYALEGLCNVVKPTHA----GGAAGRTTRACDPRLCFMSELAISLLTLLLARPPDPS------------SPGAKNLFGLLLEPQKVWYPFSCTSPPTPPHTVSFLRREARPDMILFENSRLYTHCLSSPPSLFPPMLFVRGIPQHVVRFHNVPAGGAVEGEEAAEVVRAAPELSLSTLELYLFSFAWYALSSYEDFHYGTEGPGRLTDPNRSHNGIDPSFRQERAALGWRRHGVTGLTQRNPYMTLL-------------------KDYMEAFFPHGGGASIGGGNGGASGSGMSVQCELLLRVLVEFWLEGNTVLRPGVLKEQEQQQQAVAWGNSNNNGLRVPPTAPRTSSSYDPTVALL--WSDYTPPTDVSVHGLLVASAHLLADPRLQESCRRSLGH-------QPTAAGVGETAGATALRAGGSPG------GGEKERSALTPALEVLRPHVFSFLRVAFSPESTMDTSSSGFSLAVELWLLWMRPWAAPAILRGGSPDSKSGSHPPGSATPRRTGSASFTGGATRRDAGGVSNQGESWVAEMVTLVKDFMRTEPSRAPANSDGTQAGRSTGGGRRTGTGVEGRGYCYDPWGGWVLENYSLYTTILVAFVRKAGNMSFKVNDRLRGYDYNRPYGGIHGNSGSAAMAAFFGDTAGANLRLLNRVTDVFSPGIMSLLASAKDTVRRTR 2235
G + F + + A+LGR+FG D ++ P P V G WM+ +G+ N+ + GG G A D R+ M+ L +L P PS S + F ++ V + F P P + L + + N RLY CL PP+ + QH +R LS LELY F FA YA S D G + G+ Q + W + G GL NPY TL+ DY + PHG GAS GAS EL LR + +FWL N VLR Q+ N R A + +DP A + P +D ++H LL+ AHLLADP L E+ R++G AA G GA ALR S G G + +TPAL++L+P+V FLR+AF+ S+M +S+ F+L VELWLLW++PW APAILRG +P SGS AT R G R V++ G VA MV G R G + + PW WVL N LYT L + VR A +M R RG G GS G+ N+ ++ R+ F ++ L A+ + R
Sbjct: 847 GGQSQQQRFHSMCQWYIALLGRLFGDFDRSS------PPPNVAG-------WMW-------YDGITNLNYQPQSQRQHGGGRGAQQPAEDMRVRGMTRAGACLWRMLSPSPGMPSGGPSGAGDAGGMSDEIPSFFQIIRNRHAVHFVFPVARLPLPSRLL--LSNSPDTERLACSNVRLYKACLEDPPA---------AVKQHKIR--------------------------LSMLELYWFKFAEYAASVKLD------STGGYVHAGPADGGLRYRDIQGKMLRAWGQFGARGLLHGNPYNTLVLGRRSAEFPALRLSYRVPSADYAREYLPHGNGASSAAVVVGAS--------ELFLRAVFDFWLGQNAVLRHDAAPASAQRWPRAPGANGMAGVSRARAMA---QAPFDPIDAKTPDTCPFAPLSDAALHALLLLCAHLLADPAL-EAIERAIGQAIGAEVESAAAALDGREMGANALRGPRSLGLCAAAAPGAQLLPPMTPALQLLQPYVLDFLRLAFT-RSSMHANSTAFALCVELWLLWLQPWTAPAILRGAAPARASGSP---YATQGR--------GGPHRALSRVASAGSMLVAHMVA----------------------------GARRRRGARAALWLFPPWRAWVLSNAYLYTVPLASIVRHARDMPLIAPQRSRG-----------GAGGSGYSPTGSGEEEKGNMNMMLRIVGAFPDAVVDTLRCAEAIIAADR 1469
BLAST of mRNA_P-lacustris_contig1027.323.1 vs. uniprot
Match: A0A7S2RLA6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLA6_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 7.560e-5 Identity = 65/274 (23.72%), Postives = 99/274 (36.13%), Query Frame = 1 Query: 985 NPYMTLLKDYMEAFFPHGGGASIGGGNGGASGSGMSVQCELLLRVLVEFWLEGNTVL-----------------RPGVLKEQEQQQQAVAWGNSNNNGLRVPPTA-------------PRTSSSYDPTVALLWSD------------------------YTPPTDVSVHGLLVASAHLLADPRLQESCRRSLGHQPTAAGVGETAGATALRAGGSPGGGEKERSALTPALEVLRPHVFSFLRVAFSPESTMDTSSSGFSLAVELWLLWMRPWAA 1644
+PY L+ DY ++ PHGG S+ S EL LR++VE WLEG+TVL R G L + + + G + L PP++ P +S+ +D + S + PT+ + LL+ AHLL+D L E+C H P P + +L + FL+ A + + + F LAVE+WL W++PW A
Sbjct: 352 SPYNRLVLDYAQSLLPHGGYGSL------------SSVGELFLRIVVERWLEGSTVLQEEIQMRIHEDQAQLRPRSGSLSPNWRVTKGSSRGRTTAQPLSSPPSSLAAGEGGSRRILMPTSSTDWDTRETFMDSSVMAAHHEDAQKPPVLPVEFWEGTAFATPTEKQMQALLILVAHLLSDSSLAENCYP---HPP-------------------------------PPVRILHRPLRVFLQ-ALLENMSANRNVPQFILAVEIWLTWLQPWHA 578 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1027.323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1027.323.1 >prot_P-lacustris_contig1027.323.1 ID=prot_P-lacustris_contig1027.323.1|Name=mRNA_P-lacustris_contig1027.323.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=793bp MSFADPEAEEHTLQTFFDRSKFPGGQTTQLRDACAYVQQFIAQELCGTLAback to top mRNA from alignment at P-lacustris_contig1027:6466..32800+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1027.323.1 ID=mRNA_P-lacustris_contig1027.323.1|Name=mRNA_P-lacustris_contig1027.323.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=26335bp|location=Sequence derived from alignment at P-lacustris_contig1027:6466..32800+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1027:6466..32800+ >mRNA_P-lacustris_contig1027.323.1 ID=mRNA_P-lacustris_contig1027.323.1|Name=mRNA_P-lacustris_contig1027.323.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=4758bp|location=Sequence derived from alignment at P-lacustris_contig1027:6466..32800+ (Pleurocladia lacustris SAG_25_93)back to top |