mRNA_P-lacustris_contig1025.318.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-lacustris_contig1025.318.1
Unique Name	mRNA_P-lacustris_contig1025.318.1
Type	mRNA
Organism	Pleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-lacustris_contig1025.318.1	prot_P-lacustris_contig1025.318.1	Pleurocladia lacustris SAG_25_93	polypeptide	P-lacustris_contig1025 23851..30471 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815296.913262-UTR-P-lacustris_contig1025:23735..23850	1622815296.913262-UTR-P-lacustris_contig1025:23735..23850	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1025 23736..23850 -
1693493458.4458532-UTR-P-lacustris_contig1025:23735..23850	1693493458.4458532-UTR-P-lacustris_contig1025:23735..23850	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1025 23736..23850 -
1622815296.9492788-UTR-P-lacustris_contig1025:30471..30505	1622815296.9492788-UTR-P-lacustris_contig1025:30471..30505	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1025 30472..30505 -
1693493458.4694836-UTR-P-lacustris_contig1025:30471..30505	1693493458.4694836-UTR-P-lacustris_contig1025:30471..30505	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1025 30472..30505 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815296.9241135-CDS-P-lacustris_contig1025:23850..24180	1622815296.9241135-CDS-P-lacustris_contig1025:23850..24180	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1025 23851..24180 -
1693493458.4542897-CDS-P-lacustris_contig1025:23850..24180	1693493458.4542897-CDS-P-lacustris_contig1025:23850..24180	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1025 23851..24180 -
1622815296.9389806-CDS-P-lacustris_contig1025:30447..30471	1622815296.9389806-CDS-P-lacustris_contig1025:30447..30471	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1025 30448..30471 -
1693493458.461794-CDS-P-lacustris_contig1025:30447..30471	1693493458.461794-CDS-P-lacustris_contig1025:30447..30471	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1025 30448..30471 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-lacustris_contig1025:23736..30505-
coding sequence from alignment at P-lacustris_contig1025:23736..30505-

protein sequence of mRNA_P-lacustris_contig1025.318.1

>prot_P-lacustris_contig1025.318.1 ID=prot_P-lacustris_contig1025.318.1|Name=mRNA_P-lacustris_contig1025.318.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=118bp
METADRHQRHATTVPGLAVGAYGSIASLVQPWHSRLQRSPRQRRGENHHD
GYHLLLQLWALKSVLSGLPNVPAPCPTSLGPSSLSLLRLPSYFFKLGIQN
SMLLLVHVSLSFCLARS*

mRNA from alignment at P-lacustris_contig1025:23736..30505-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-lacustris_contig1025.318.1 ID=mRNA_P-lacustris_contig1025.318.1|Name=mRNA_P-lacustris_contig1025.318.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6770bp|location=Sequence derived from alignment at P-lacustris_contig1025:23736..30505- (Pleurocladia lacustris SAG_25_93)
CTTGCCGAATGAACGATGGGCTCCAATCGCAAGAATGGAGACTGCTGATC
GTCATCAGGTACGTGTGGGTGTATTTGCCTACGCACATAGGAGCTTGTTG
CAGGAGCGTACGGTTGATGTGTTAATCGCTTCACTCCCAGCGGTCCTAAC
GGTTCGTTGGGGTCTCTCACTTGTCGAGTTGTGCGTCGGCCATGCTGTAT
ATTATACGGAGTAGTAGGTAGCTGGCAAGATATCTTGTTCGCTCTCTCTT
GACAGCTTCACTCCTCTTAGCACCACCCTTCTCTAGCTCCCTCCTGGCTG
GGCTACCATTCAACGAGGGGAGGGGCCTACAGTTTTAGGCAAGCCAACGT
TCAAATTCAAATCTTCATGGATAAAAAGAGTCGAGGTCCAACACATGTAC
AAATTTTATGACTACGGCGGTTGTTTGTACAGCAGTCGAGGTATTTAAAG
AAGGTATTGTTTGATATAATTACAGAGGTATTTAAAGAAGGTATTGTTTG
ATATAATCTAGGGTGTCAAGAATGGTGTGGCCTGGAGGCCGGGTCTTGGG
CCCTCGGAAGTGTAGCCTTGAGGCCGGGCCTTGGACCCTTGGAAATGGAT
CTTCTTGAGACCGTCTCTTGGAGACTACTATATATCTACTCCGCCGGAGT
GTTGATCACCGTAATCACACGAACGAAGAGGAATGAAAGATAAAAGGGAA
GTGGGCCCATAAAAGCACACGTCACACTTTACCACTCTCCTAAACCCCTG
CCCTCATTGGCCAACAAAAGGGGCCAAGCCAAAGCCTCCATTAATTGGTG
GAGATAACCCCTGTACTCAACTCATCATTCTTGCTCTCATCATACGTGAT
CCATCCTATTCCGCCGCATATTTCATACTTCATATGTACTCAACCGTTAC
CTCAAAGACCCACTGCTACAAGTCATCTAACATCCCCTGCTTGTAGCTGT
GTCTCTGATTCTCAACTCATTACAGCATATCAAGTAGCTCCGATATTCAA
ATATCACCTCAAATTCCCCGGCGAAACACAACATAGAACATTCCAAACTT
AGAACATGGGACTACTGCTGTAGAAACACATTGAATTCACACGCAGAAAC
ATAGCCATTGGGCTAGATGAACTTTCACACTTATACACAGTGCAATAGCC
ATTCAGACTAGATGGATTCCCAAATATCCAAATATAAATGCCAGCCATCG
GGCAACTACTTTATTATCCCCCTGCTCCGAGAAAAAAACTGTAAACACTC
CCGTTCAGGGCTACCGTTAGTATACTAGAAGGCGGGTAGGTTTGAGAAGC
AGCGTGTGCGTCAGTGGGTGAACGCTTGTGTGCTTCTCAACTAACTGCGT
TAAGCCGTATGTTGCGGGCACACCAGTGGTGCTGGCGGCAGCTGGATCGC
CAGCTGTGACTGTGGTGCACTTTGGTGCGCTTCCCAACTTTTTTTGTTTC
TCCATACACATACACACACCGAACTGGCTCTCGAGAGAGAGCTGGGGAAA
AAAGATGAAATAATGACATCCAAAAGCCCAAGGGGTCATTTCATATCAAA
TGCATAAGCCTAACGGGTCATCTAATGTCAAATGCAGAATACTTCAGGGA
GAGAGTGCACACGGTGCCGACGGGCCACGAAGGGGCTGTGTAGGTATCTC
CAAGCCTACACTACTGTAGGGCACAGTGGTGCTGTCAGGACAGGAGTAGT
AAGTAGTGTGTGTGTGCTCTACAGCAGTCAGTAGGGGCTGCTGGAACACC
TCTCTAAAAAAAGCACAGCAGCCAACAAGCGAAACACAGCAGCAGACATA
CTTACTTCCGTAAACAAGAAACAACTGCTGTACACAGCCCCTCGGTGGCC
CGGCATCAGCTGCAGCGCTTTGTAACTATTACTCTCTCTCTCTGCTCTGT
CTGTCCTCTGCAGCTCTCTCTCTCTCTCCTAGGCGCTTTGCACTCTCTCT
GCTCTGTCTGTCTGACTCTCTCTCTCTACAGCTCTTCTCCCTCTGTGCAT
CTCAGCAGCGATTTGTATACTCATCAGCAGCGCTTTACTCTCTCTCTCTC
TGCTCTGTCTGTCTGATGTCCTCTACATACAGCTCTCTCTCTCTCCTGTG
CGCTTTCTCTCTCTGTGCATCAGCAGCCTTCTAGTATACTCTCTCTCTCT
CTCTCTCTGCACTGCCTGTCCTCTTCTACAGCTCTCTCTCTCTCCTGTGC
GCTCTCCAGATCTGTCTCTGTCTGTGCGAAAAAATGCCTGGCGAACCAAC
TTATCAACTCCGCTCTATGCACACGTTTGACGTCCTTGCTCGCCCATTTC
GGCACGGGTTGCAGGATAACAAGCAGCAATCGCTCGAGCTAAATAGTCTC
GTCAGTTTAAGCCCTTGGTTGTGCCGATGTGGCGAGTTCGTCGCGTTGTG
AATCCAAACGTGGGTCTGTCTTTTGCGAGGACACACACACACAAAAAAGA
AGAAGGTTTCATCAGATTTGCCTTCGTATGGCAGGATTTTTTTGTTTTCA
CACCCCCCCACAGTCCCGCGATGTTGATATGAATTCGAAGCTATGCTTCT
CGTTATCTCGCGAAACATAACGTCTCGCTTCGCTCGACGGCTGCTTCTCA
ATATTAGTATAAAATATCAATATACAATTGTCAACCGTCGAGCAAATAAT
CCTTTGTTCCGCCCTACTCCGAGAAACAACGATCTTGTCTGACGTATTTC
AGCATCGTGCCATTGTATTCCGCATTTGCCTCCCATGATTTGATTGGGAA
ACAAATTCACCCACAACGATCCACCGGTTAGGCACGGTGATTCAATCGAA
GACATACATGTAGCTAAACTCACACACAGAAACCATAGCCACTCGCTCTG
TGATAGATTCCCAATTACCCGTGATACAAACGACAACTCAGCTTTCATAC
TTGTACCCCATATCTCATGATTTGATTTGAGAAACAAATGCCTCCTTGCG
TCGAGTGGGGGTACGGAGGTTGATGACGAAAAGCCGAATCCTGCATAATC
CCATTCGTTCAGAACAAAAACCCAAGAGTCCAAATGATCACGGGCCAGGG
AAAAGTGAAAACCGGCTCGGATCCAGAAATGAAAATATGTCAAAACAAAA
CTCCAAAAAAACAAAAGCCCATGCACAAGATTCCATTCCAAACAAAAACC
CAACCAAAAATAAAACAATACCGTAAGGCACAAAGGGAGCCAAGTCAAAC
ATCAATGACCTACTTTTTGCCGGTCCATCCATCCCAGCGGGCCAACTGCC
CCTTCCCCCAGCGATTAATCTCTTTTGCCTCCGCTACGGCCGCCTTTTGA
AAATTGTTTCCGGCGCCACGACTCGGGTTCCGACAGATTTTCTTTCCGCC
TGGGCAGGGAAGGGCAGATGTCACTCCCGAGAAGTTGACTCGCGGGCAAG
TTCGGAAGGGCAGGGCGAGTGGCATAATGAGAAATCCAAATTCTACATGG
CCTCAACCTGGCATGAATCGGTACTGCTGTGTATAGGCGCAAAACCAATG
TGTAACATTCCCCCGGTTGTGGACAGCAGTGTAGCGCCTGCTACAGTTTG
GAATACTAAACAAAACAACCATTTTACATTTGCAAGTATCGTAGTTGTGC
GACATACTGTAGGGGCGCGATGTCTTTGCACTCGATGTCATAGGATAAAC
ATTGCAGGATGTAAGTCAGGATGTAAGTCAAATGGCTACATTGTCTCGGG
CAAGTCTCCGATGCTGACAAGCAACCCTGACATAACCAGCCGTTCGGTTT
GGGCTGAACTCGTGATCTACACTCACAAGCGACCAGAGTGAAATCAGATT
CAAAACGTCCTCTGTTCACTCAAGATATCAGGCCAAAGCAAACACATCAA
ATCACAATTCAAGCAAGGATTGAATCCAAAACCAGCAAAGCAAAGCAAAA
CAAAGGATATGATCAAACAAATCAAAAACGTGCCTGGGGCGGGTTAAAAA
TCCTAGCAGCACGGTCCTTCACGCCTGGTCTCCATCTCATCCTCCTTCTC
GCTTCCCCAAAAACTCGGTTGAGCGTGGGGATTTCCCCCCTGTCAAACGG
GAACTGCTCCGTCCCCAAAACTGTTTCGTTGTTCGCGACTGCACCTCCGA
TGCCGCTTCTGATGATGTCGCTGCTGCCGTTGGCGTGGCTGCCGTAGGCG
CTGCTGCTCTCATTGTGGCTGCTGATGCTGGGGCTGCTGCTGTCGACGCT
AACCCCGGATGGAATGCGGTTTCTCGTGCCGTCGCTGCTGTCGATGACGT
TGCTGTCGACATTGATGTCTTCATCATCCGCGATTATTGTGCCCTCGGTC
CCTTCCGCCGATGCAGCAAAAGAAATACTGATGACACCCTCGGGGGGATA
GAAACGGCAGGGGACGGGGGGAGAGCAGGCTATGGAACAACGACACACGG
TGGAGGCACCGTATCCTGGGAGTAGGTCGTGGCTACCTCTTCCGACGCTG
CTTCCGAACAGGCTGCTGCTGCTGCCGCTGCTGCTGCCGCTTCCGCTTCC
GCCATCTTGCTTGCAACATGAGTATACCATGCTGACATGTGTTCGGAGAT
CATCCTTTCTCGTTCACACACCCCATGTCTCACACAGTTAACACGGGGAA
GGCCGGAGTGCCAAAGCTCGAAGCACCCCTTCTCGAAACAGACGTTCCAA
TCGACCCAAGCCTCATGCAACCACATATCTGTCGCCATGCACATGCTCCT
CCTCCATCTTGCTTGCTCGGTTGCAGTCGAGCCATTACCGTGCTGTGCCC
GCTGTTTCGCCCTCTACTCCTGCTGCTCCTTCTTCTCCGGGGGACCCCAC
TGTGAGATTTCCAAATATCGTGCGTGTACTATTCCCGAACGACGATGGCG
CGTCAGATCTAGAGTTGGCTTCAAGGATGGAGTCATTGGAGGGGGTCGAA
CCCTTCACACGCCCTCTCCAGTGGAAATAGCACACGCACCATATTGGCAA
AGCTCACAGTGGGGTCCCCCGGAGAAGAAGGAGCAGCAGAAGAAGAGGTC
GAAACAGCGGGCACAGCACGGTAATGGCTCGCCTGCAAAGCCGGCGGCTG
TTGAAGAAGGGGGGCTAGGCTGAAGTTGCTGCTGCTGGTGATGCTCCACG
TATTCGTCCTTCGGAAACCCACCACCGCCCACGATGTATTCACCCCCTTG
GTGATCGCTGAAGACCATGTTCGCTACCCGTAAGACGGAGGGAGGTTTCG
TCTATGAGGAGGATGACCTCCACCACCATCGAGTTTCCCTGCGCCGCTTC
CATTGCCGCGGCCTCCGTTGCTTTGATCCGGTCTCCTCCATGCTGATGTT
GTTGAAGCTGTTGTCGTCGAGGCTGTTGTGCACTGGCATGGTGTTGGGGC
TGCTGCCGGGGCTGCTTCCCACTGGCGTGGTGGCTGTCGCTGCCAGATGA
CAAAGCACCATAGCGAGCAACTTGCCGATATCCCAACCAGTACACTCGCT
GCTGGACATAGCAGTCCGCGTTGCTGTGAGAACCAGACTCATGGTAGTCA
CACCACTGTACGTGTTATCTTCTCTCCCTCTCCTGCTGCTGTCCTGGAGG
TCGCGGGCTGCAGTCGCCTCTTGGTCCTGCCCCCCCTCCAGATCGACTGG
AATTCGCCGCCACCATCGCATACCGTGCTCCGCCCGACTGGTCCTCTCTC
TCCTGCCTTTCTTTCTTCCTTTCGGCGGCACTGGTCACAACGCGTTGGAC
ATGCAAATCAGTCAGGTCCACCTCGGCTAACAGCTGCGACTTTTGCACCT
CAAACTCATCGAAATGAGCGCTAGCGATGTGACTATTGCACTGATGATCA
GAATCAGTTCTGCCGTGCACAGGAGCTTCCGTCTCAGGATCTTTGCTCTC
CCAAGAACACTCTAGGACCCTCATCCGGCTTTTGAGCGAGTCTACTCCAT
TGTTTCACGACTTCTTGCTTCTCGAACATAGCCGGATTTGCGAAGTGCTG
GGAAAAAACCTCCAACCCCTGCCCTGGACTACCTATAGAGAGGATCAGTT
CAAGCGAGGTGGAGTCCGTTGTCTTCGAAATCAGCAAAGACCACACCCTA
AACGCACCATCAACAGCCTCCTGCCCATATGTGTCGTACAGCTCAACATG
GTCAGTCTCAAATCCTGCCTTGATCCTGCTGTTCAACGCATCTAACAGCC
CTTGGTCAGCACAATACGAGCGAAGCTGGGTTCTACTTGATGTTTCCAGC
GTGAAATTTTCCATCAAACTCCTTCATACATGATGTTGAAGTGACTCGTA
CAACACCATCACGTCTCTCTCCTACAAACCTACGTGCATCACCGCCACTC
AAATCGTGCTGCCTCCCCATCGCAGCGTCACGCCACTACTGTTCCCGGGC
TTGCTGTGGGGGCGTACGGGTCGATCGCATCCCTCGTCCAGCCATGGCAT
AGTCGTCTCCAACGGAGCCCTCGTCAGCGGCGCGGCGAAAATCATCACGA
CGGCTATCATCTGCTGCTGCAGCTCTGGGCTCTGAAGTCTGTACTGTCTG
GGTTGCCAAACGTGCCAGCACCTTGTCCGACATCTCTTGGGCCTTCATCT
CTCTCTCTCCTTCGCCTCCCCTCTTATTTCTTCAAGCTTGGCATCCAAAA
CTCGATGCTGCTCTTGGTTCATGTTTCTCTCAGTTTTTGCCTCGCTCGTT
CTTGAAAAACGCACGACCCTATAAATGCGCACTCTCGCTCACCTCTAACT
CTTCCTTTAGAGTTGTTCGCTAGCGTGTTAAGAGCTTCGGAGGCGGGTGC
GCCCTTTGTCGCCAAATAGT

Coding sequence (CDS) from alignment at P-lacustris_contig1025:23736..30505-

>mRNA_P-lacustris_contig1025.318.1 ID=mRNA_P-lacustris_contig1025.318.1|Name=mRNA_P-lacustris_contig1025.318.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=708bp|location=Sequence derived from alignment at P-lacustris_contig1025:23736..30505- (Pleurocladia lacustris SAG_25_93)
ATGGAGACTGCTGATCGTCATCAGATGGAGACTGCTGATCGTCATCAGCG
TCACGCCACTACTGTTCCCGGGCTTGCTGTGGGGGCGTACGGGTCGATCG
CATCCCTCGTCCAGCCATGGCATAGTCGTCTCCAACGGAGCCCTCGTCAG
CGGCGCGGCGAAAATCATCACGACGGCTATCATCTGCTGCTGCAGCTCTG
GGCTCTGAAGTCTGTACTGTCTGGGTTGCCAAACGTGCCAGCACCTTGTC
CGACATCTCTTGGGCCTTCATCTCTCTCTCTCCTTCGCCTCCCCTCTTAT
TTCTTCAAGCTTGGCATCCAAAACTCGATGCTGCTCTTGGTTCATGTTTC
TCTCAGTTTTTGCCTCGCTCGTTCTTGACGTCACGCCACTACTGTTCCCG
GGCTTGCTGTGGGGGCGTACGGGTCGATCGCATCCCTCGTCCAGCCATGG
CATAGTCGTCTCCAACGGAGCCCTCGTCAGCGGCGCGGCGAAAATCATCA
CGACGGCTATCATCTGCTGCTGCAGCTCTGGGCTCTGAAGTCTGTACTGT
CTGGGTTGCCAAACGTGCCAGCACCTTGTCCGACATCTCTTGGGCCTTCA
TCTCTCTCTCTCCTTCGCCTCCCCTCTTATTTCTTCAAGCTTGGCATCCA
AAACTCGATGCTGCTCTTGGTTCATGTTTCTCTCAGTTTTTGCCTCGCTC
GTTCTTGA

mRNA_P-lacustris_contig1025.318.1 (mRNA) Pleurocladia lacustris SAG_25_93

ZOOM

x 1

POSITION

0